Gvermi12285.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12285.t1
Unique NameGvermi12285.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length819
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4093934..4096390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1210884.HG799464_gene10762
Max annot lvl2|Bacteria
Evalue2.78e-77
EggNOG OGs28HSN@1|root,2Z7ZT@2|Bacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12285Gvermi12285Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4093934..4096390 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12285.t1.start1Gvermi12285.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4093934..4093936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12285.t1.CDS1Gvermi12285.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4093934..4096390 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12285.t1.exon1Gvermi12285.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4093934..4096390 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12285.t1.stop1Gvermi12285.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4096388..4096390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12285.t1Gvermi12285.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4093934..4096390 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=819bp
MTSECLFYNPDDDSYSQREAEKFRRWSALFANVLSGVVRIGSRTPIRNKP
IFLTPEVLPGGFASGRFSAGGNLADFERELVAKNHLEVRTSVNERDVWLQ
NSRKSLNLHFLSAEGLRELYQFLESGKYHCVYPEEAALLVVVWMLKRGDA
ELARGLVNTIMPYFGDVRFYPRPSSAPISLDLKCSLLSVGAFKREISDMR
ISKGSFSYAVNKLIVEDFAPNYDGLLSLLLATCNSDLIPFKSRLSNNMVA
AFTTLFKNFEQIQRVYNAFFDMAKRPKREMKQLGDSRNCGKLLRITKNLI
ESKSKRLSRQDKIVAHQILVQIRDDSRRGLPCEWVPGENFENGGLSLDKL
PRKLKTFRANQRKTTQAEHQLVSRNWKKLSVDRVSKVSIDDQTGVDDVRS
LTQPVFRSEAERYGVKRGSTVPLSISRLATKLERKPIENMFEEGLIPSME
ALAMLFDQIMGSVQTRWPGPIEMRQLYASLFGAFRRRRSLLLLNYQSQLR
FEELPWVHHLEEVRRKQIGTSSDHNLDIFCDLIRKCISKWPEVMIPNKMV
TALDHMARDYGVSTAKGPWIGLLPELAADIFMGGFTSKWYDHATMAKNMM
SSLLYGKYYATGAEASPWNEMTRSPHETDPQSKGVQFSTLCAKRAERLKV
EGWVARNGAVIEESMILTGQNYPYLLQVLKFYGKNFSSTEVKGISVKCFH
RLKKMSKLALDDKNPWQTRLQVTKNVAYGWRQMVALVSIMDQTDIEHFFR
QTASLNEAAGGCTLQRALVDLRAAWIASQNESPVRRRPWKPLRGWHSGKH
GLWDKSWCEKMKAMVEHS*
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spliced messenger RNA

>Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2457bp|location=Sequence derived from alignment at ScGOVlb_3404:4093934..4096390+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTGAATGCCTATTCTATAATCCTGATGATGACAGTTATTCGCA
GAGAGAAGCTGAGAAGTTCCGACGTTGGTCCGCGTTGTTTGCTAATGTCC
TGAGCGGCGTCGTTAGAATTGGTTCAAGAACTCCGATTCGAAACAAGCCC
ATATTCCTTACTCCTGAAGTTCTTCCAGGCGGGTTTGCCAGTGGTCGTTT
TTCAGCGGGAGGAAATCTTGCTGATTTCGAAAGGGAACTGGTTGCCAAAA
ACCACTTGGAAGTTCGAACCTCCGTAAATGAACGAGACGTTTGGCTGCAG
AATTCACGAAAATCTTTGAACTTGCATTTTTTGTCTGCAGAGGGATTGCG
TGAACTGTACCAATTTCTCGAGTCTGGAAAGTATCATTGCGTGTATCCAG
AAGAAGCTGCTCTCCTTGTCGTGGTATGGATGCTCAAACGTGGGGACGCA
GAGTTGGCTCGTGGTTTGGTGAACACCATCATGCCGTATTTTGGAGACGT
TCGTTTTTACCCACGACCTTCATCGGCACCTATAAGTTTAGATTTGAAGT
GCAGTTTGCTCTCTGTCGGCGCATTTAAGAGAGAGATTTCTGATATGCGA
ATATCGAAAGGTAGTTTTTCGTATGCTGTGAACAAACTAATTGTCGAGGA
CTTCGCCCCCAACTACGATGGACTTCTGTCATTGTTGCTAGCTACTTGCA
ATAGTGATCTGATTCCTTTCAAATCTCGACTTTCAAATAACATGGTTGCG
GCCTTCACAACGCTTTTCAAAAACTTTGAGCAAATTCAGAGAGTGTATAA
TGCTTTCTTTGATATGGCAAAGCGTCCAAAAAGGGAAATGAAGCAGCTTG
GAGACTCACGGAATTGCGGTAAATTGTTGAGAATTACGAAGAACCTTATA
GAAAGCAAATCAAAACGGCTTTCAAGACAAGACAAGATTGTGGCGCATCA
GATACTGGTTCAAATTCGAGATGACTCAAGGCGAGGACTGCCTTGCGAAT
GGGTGCCGGGTGAGAACTTCGAAAACGGGGGGTTAAGTTTGGATAAACTT
CCGAGAAAACTAAAAACCTTCAGAGCGAATCAGAGAAAGACTACTCAGGC
GGAACATCAGTTGGTTTCACGTAACTGGAAAAAGCTCTCGGTAGACCGAG
TTTCCAAGGTTAGTATAGATGATCAAACTGGAGTTGATGATGTTCGGTCA
TTGACCCAGCCCGTTTTTCGGAGTGAAGCAGAGCGCTATGGAGTTAAGCG
TGGCAGCACAGTGCCGCTATCAATTTCTCGACTCGCGACAAAGCTCGAGA
GGAAACCTATTGAGAACATGTTTGAGGAAGGATTGATACCTTCAATGGAA
GCCTTAGCCATGTTGTTCGATCAAATTATGGGGTCTGTGCAGACACGATG
GCCGGGGCCCATTGAGATGAGGCAACTATATGCATCACTTTTTGGAGCTT
TTCGTCGCCGCCGATCTCTTCTACTACTAAATTACCAGTCGCAACTAAGA
TTTGAAGAACTTCCGTGGGTGCATCATCTCGAAGAGGTTCGGCGCAAACA
AATTGGAACATCGAGTGACCACAACCTTGATATCTTCTGCGATTTGATCC
GAAAATGCATTTCTAAATGGCCTGAAGTCATGATTCCGAACAAGATGGTC
ACCGCCCTGGATCACATGGCTAGAGATTACGGAGTATCAACTGCGAAAGG
CCCGTGGATTGGACTACTTCCAGAGTTAGCAGCGGATATTTTTATGGGTG
GATTCACCTCGAAATGGTACGACCATGCTACCATGGCAAAGAATATGATG
TCGTCCTTGCTCTACGGGAAATACTACGCGACTGGAGCTGAAGCCTCTCC
CTGGAATGAAATGACACGATCGCCGCACGAGACCGATCCACAGAGCAAAG
GAGTGCAATTTTCAACCTTATGTGCAAAACGCGCTGAGCGTCTTAAAGTA
GAGGGATGGGTAGCTCGGAATGGAGCCGTTATCGAAGAATCTATGATTCT
TACCGGCCAGAATTATCCGTACCTTTTGCAAGTCTTAAAGTTCTATGGGA
AAAACTTTAGCAGCACAGAAGTGAAAGGGATAAGTGTTAAATGTTTCCAT
CGTTTAAAGAAGATGTCGAAGCTGGCACTGGACGACAAGAACCCCTGGCA
AACAAGACTGCAGGTCACAAAAAATGTGGCTTACGGTTGGCGTCAAATGG
TGGCTTTGGTTTCCATAATGGATCAAACAGATATAGAGCATTTTTTCCGC
CAGACGGCTTCCCTGAACGAGGCCGCTGGTGGGTGCACTTTGCAAAGGGC
TCTGGTGGACCTACGAGCTGCATGGATAGCATCGCAGAATGAAAGCCCCG
TTCGCCGCCGTCCATGGAAGCCGTTGAGAGGGTGGCACAGTGGCAAGCAC
GGTCTCTGGGATAAATCATGGTGCGAGAAGATGAAAGCAATGGTAGAGCA
TTCATAG
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protein sequence of Gvermi12285.t1

>Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=819bp
MTSECLFYNPDDDSYSQREAEKFRRWSALFANVLSGVVRIGSRTPIRNKP
IFLTPEVLPGGFASGRFSAGGNLADFERELVAKNHLEVRTSVNERDVWLQ
NSRKSLNLHFLSAEGLRELYQFLESGKYHCVYPEEAALLVVVWMLKRGDA
ELARGLVNTIMPYFGDVRFYPRPSSAPISLDLKCSLLSVGAFKREISDMR
ISKGSFSYAVNKLIVEDFAPNYDGLLSLLLATCNSDLIPFKSRLSNNMVA
AFTTLFKNFEQIQRVYNAFFDMAKRPKREMKQLGDSRNCGKLLRITKNLI
ESKSKRLSRQDKIVAHQILVQIRDDSRRGLPCEWVPGENFENGGLSLDKL
PRKLKTFRANQRKTTQAEHQLVSRNWKKLSVDRVSKVSIDDQTGVDDVRS
LTQPVFRSEAERYGVKRGSTVPLSISRLATKLERKPIENMFEEGLIPSME
ALAMLFDQIMGSVQTRWPGPIEMRQLYASLFGAFRRRRSLLLLNYQSQLR
FEELPWVHHLEEVRRKQIGTSSDHNLDIFCDLIRKCISKWPEVMIPNKMV
TALDHMARDYGVSTAKGPWIGLLPELAADIFMGGFTSKWYDHATMAKNMM
SSLLYGKYYATGAEASPWNEMTRSPHETDPQSKGVQFSTLCAKRAERLKV
EGWVARNGAVIEESMILTGQNYPYLLQVLKFYGKNFSSTEVKGISVKCFH
RLKKMSKLALDDKNPWQTRLQVTKNVAYGWRQMVALVSIMDQTDIEHFFR
QTASLNEAAGGCTLQRALVDLRAAWIASQNESPVRRRPWKPLRGWHSGKH
GLWDKSWCEKMKAMVEHS*
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mRNA from alignment at ScGOVlb_3404:4093934..4096390+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2457bp|location=Sequence derived from alignment at ScGOVlb_3404:4093934..4096390+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCTGAATGCCTATTCTATAATCCTGATGATGACAGTTATTCGCA GAGAGAAGCTGAGAAGTTCCGACGTTGGTCCGCGTTGTTTGCTAATGTCC TGAGCGGCGTCGTTAGAATTGGTTCAAGAACTCCGATTCGAAACAAGCCC ATATTCCTTACTCCTGAAGTTCTTCCAGGCGGGTTTGCCAGTGGTCGTTT TTCAGCGGGAGGAAATCTTGCTGATTTCGAAAGGGAACTGGTTGCCAAAA ACCACTTGGAAGTTCGAACCTCCGTAAATGAACGAGACGTTTGGCTGCAG AATTCACGAAAATCTTTGAACTTGCATTTTTTGTCTGCAGAGGGATTGCG TGAACTGTACCAATTTCTCGAGTCTGGAAAGTATCATTGCGTGTATCCAG AAGAAGCTGCTCTCCTTGTCGTGGTATGGATGCTCAAACGTGGGGACGCA GAGTTGGCTCGTGGTTTGGTGAACACCATCATGCCGTATTTTGGAGACGT TCGTTTTTACCCACGACCTTCATCGGCACCTATAAGTTTAGATTTGAAGT GCAGTTTGCTCTCTGTCGGCGCATTTAAGAGAGAGATTTCTGATATGCGA ATATCGAAAGGTAGTTTTTCGTATGCTGTGAACAAACTAATTGTCGAGGA CTTCGCCCCCAACTACGATGGACTTCTGTCATTGTTGCTAGCTACTTGCA ATAGTGATCTGATTCCTTTCAAATCTCGACTTTCAAATAACATGGTTGCG GCCTTCACAACGCTTTTCAAAAACTTTGAGCAAATTCAGAGAGTGTATAA TGCTTTCTTTGATATGGCAAAGCGTCCAAAAAGGGAAATGAAGCAGCTTG GAGACTCACGGAATTGCGGTAAATTGTTGAGAATTACGAAGAACCTTATA GAAAGCAAATCAAAACGGCTTTCAAGACAAGACAAGATTGTGGCGCATCA GATACTGGTTCAAATTCGAGATGACTCAAGGCGAGGACTGCCTTGCGAAT GGGTGCCGGGTGAGAACTTCGAAAACGGGGGGTTAAGTTTGGATAAACTT CCGAGAAAACTAAAAACCTTCAGAGCGAATCAGAGAAAGACTACTCAGGC GGAACATCAGTTGGTTTCACGTAACTGGAAAAAGCTCTCGGTAGACCGAG TTTCCAAGGTTAGTATAGATGATCAAACTGGAGTTGATGATGTTCGGTCA TTGACCCAGCCCGTTTTTCGGAGTGAAGCAGAGCGCTATGGAGTTAAGCG TGGCAGCACAGTGCCGCTATCAATTTCTCGACTCGCGACAAAGCTCGAGA GGAAACCTATTGAGAACATGTTTGAGGAAGGATTGATACCTTCAATGGAA GCCTTAGCCATGTTGTTCGATCAAATTATGGGGTCTGTGCAGACACGATG GCCGGGGCCCATTGAGATGAGGCAACTATATGCATCACTTTTTGGAGCTT TTCGTCGCCGCCGATCTCTTCTACTACTAAATTACCAGTCGCAACTAAGA TTTGAAGAACTTCCGTGGGTGCATCATCTCGAAGAGGTTCGGCGCAAACA AATTGGAACATCGAGTGACCACAACCTTGATATCTTCTGCGATTTGATCC GAAAATGCATTTCTAAATGGCCTGAAGTCATGATTCCGAACAAGATGGTC ACCGCCCTGGATCACATGGCTAGAGATTACGGAGTATCAACTGCGAAAGG CCCGTGGATTGGACTACTTCCAGAGTTAGCAGCGGATATTTTTATGGGTG GATTCACCTCGAAATGGTACGACCATGCTACCATGGCAAAGAATATGATG TCGTCCTTGCTCTACGGGAAATACTACGCGACTGGAGCTGAAGCCTCTCC CTGGAATGAAATGACACGATCGCCGCACGAGACCGATCCACAGAGCAAAG GAGTGCAATTTTCAACCTTATGTGCAAAACGCGCTGAGCGTCTTAAAGTA GAGGGATGGGTAGCTCGGAATGGAGCCGTTATCGAAGAATCTATGATTCT TACCGGCCAGAATTATCCGTACCTTTTGCAAGTCTTAAAGTTCTATGGGA AAAACTTTAGCAGCACAGAAGTGAAAGGGATAAGTGTTAAATGTTTCCAT CGTTTAAAGAAGATGTCGAAGCTGGCACTGGACGACAAGAACCCCTGGCA AACAAGACTGCAGGTCACAAAAAATGTGGCTTACGGTTGGCGTCAAATGG TGGCTTTGGTTTCCATAATGGATCAAACAGATATAGAGCATTTTTTCCGC CAGACGGCTTCCCTGAACGAGGCCGCTGGTGGGTGCACTTTGCAAAGGGC TCTGGTGGACCTACGAGCTGCATGGATAGCATCGCAGAATGAAAGCCCCG TTCGCCGCCGTCCATGGAAGCCGTTGAGAGGGTGGCACAGTGGCAAGCAC GGTCTCTGGGATAAATCATGGTGCGAGAAGATGAAAGCAATGGTAGAGCA TTCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4093934..4096390+

>Gvermi12285.t1 ID=Gvermi12285.t1|Name=Gvermi12285.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2457bp|location=Sequence derived from alignment at ScGOVlb_3404:4093934..4096390+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCTGAATGCCTATTCTATAATCCTGATGATGACAGTTATTCGCA
GAGAGAAGCTGAGAAGTTCCGACGTTGGTCCGCGTTGTTTGCTAATGTCC
TGAGCGGCGTCGTTAGAATTGGTTCAAGAACTCCGATTCGAAACAAGCCC
ATATTCCTTACTCCTGAAGTTCTTCCAGGCGGGTTTGCCAGTGGTCGTTT
TTCAGCGGGAGGAAATCTTGCTGATTTCGAAAGGGAACTGGTTGCCAAAA
ACCACTTGGAAGTTCGAACCTCCGTAAATGAACGAGACGTTTGGCTGCAG
AATTCACGAAAATCTTTGAACTTGCATTTTTTGTCTGCAGAGGGATTGCG
TGAACTGTACCAATTTCTCGAGTCTGGAAAGTATCATTGCGTGTATCCAG
AAGAAGCTGCTCTCCTTGTCGTGGTATGGATGCTCAAACGTGGGGACGCA
GAGTTGGCTCGTGGTTTGGTGAACACCATCATGCCGTATTTTGGAGACGT
TCGTTTTTACCCACGACCTTCATCGGCACCTATAAGTTTAGATTTGAAGT
GCAGTTTGCTCTCTGTCGGCGCATTTAAGAGAGAGATTTCTGATATGCGA
ATATCGAAAGGTAGTTTTTCGTATGCTGTGAACAAACTAATTGTCGAGGA
CTTCGCCCCCAACTACGATGGACTTCTGTCATTGTTGCTAGCTACTTGCA
ATAGTGATCTGATTCCTTTCAAATCTCGACTTTCAAATAACATGGTTGCG
GCCTTCACAACGCTTTTCAAAAACTTTGAGCAAATTCAGAGAGTGTATAA
TGCTTTCTTTGATATGGCAAAGCGTCCAAAAAGGGAAATGAAGCAGCTTG
GAGACTCACGGAATTGCGGTAAATTGTTGAGAATTACGAAGAACCTTATA
GAAAGCAAATCAAAACGGCTTTCAAGACAAGACAAGATTGTGGCGCATCA
GATACTGGTTCAAATTCGAGATGACTCAAGGCGAGGACTGCCTTGCGAAT
GGGTGCCGGGTGAGAACTTCGAAAACGGGGGGTTAAGTTTGGATAAACTT
CCGAGAAAACTAAAAACCTTCAGAGCGAATCAGAGAAAGACTACTCAGGC
GGAACATCAGTTGGTTTCACGTAACTGGAAAAAGCTCTCGGTAGACCGAG
TTTCCAAGGTTAGTATAGATGATCAAACTGGAGTTGATGATGTTCGGTCA
TTGACCCAGCCCGTTTTTCGGAGTGAAGCAGAGCGCTATGGAGTTAAGCG
TGGCAGCACAGTGCCGCTATCAATTTCTCGACTCGCGACAAAGCTCGAGA
GGAAACCTATTGAGAACATGTTTGAGGAAGGATTGATACCTTCAATGGAA
GCCTTAGCCATGTTGTTCGATCAAATTATGGGGTCTGTGCAGACACGATG
GCCGGGGCCCATTGAGATGAGGCAACTATATGCATCACTTTTTGGAGCTT
TTCGTCGCCGCCGATCTCTTCTACTACTAAATTACCAGTCGCAACTAAGA
TTTGAAGAACTTCCGTGGGTGCATCATCTCGAAGAGGTTCGGCGCAAACA
AATTGGAACATCGAGTGACCACAACCTTGATATCTTCTGCGATTTGATCC
GAAAATGCATTTCTAAATGGCCTGAAGTCATGATTCCGAACAAGATGGTC
ACCGCCCTGGATCACATGGCTAGAGATTACGGAGTATCAACTGCGAAAGG
CCCGTGGATTGGACTACTTCCAGAGTTAGCAGCGGATATTTTTATGGGTG
GATTCACCTCGAAATGGTACGACCATGCTACCATGGCAAAGAATATGATG
TCGTCCTTGCTCTACGGGAAATACTACGCGACTGGAGCTGAAGCCTCTCC
CTGGAATGAAATGACACGATCGCCGCACGAGACCGATCCACAGAGCAAAG
GAGTGCAATTTTCAACCTTATGTGCAAAACGCGCTGAGCGTCTTAAAGTA
GAGGGATGGGTAGCTCGGAATGGAGCCGTTATCGAAGAATCTATGATTCT
TACCGGCCAGAATTATCCGTACCTTTTGCAAGTCTTAAAGTTCTATGGGA
AAAACTTTAGCAGCACAGAAGTGAAAGGGATAAGTGTTAAATGTTTCCAT
CGTTTAAAGAAGATGTCGAAGCTGGCACTGGACGACAAGAACCCCTGGCA
AACAAGACTGCAGGTCACAAAAAATGTGGCTTACGGTTGGCGTCAAATGG
TGGCTTTGGTTTCCATAATGGATCAAACAGATATAGAGCATTTTTTCCGC
CAGACGGCTTCCCTGAACGAGGCCGCTGGTGGGTGCACTTTGCAAAGGGC
TCTGGTGGACCTACGAGCTGCATGGATAGCATCGCAGAATGAAAGCCCCG
TTCGCCGCCGTCCATGGAAGCCGTTGAGAGGGTGGCACAGTGGCAAGCAC
GGTCTCTGGGATAAATCATGGTGCGAGAAGATGAAAGCAATGGTAGAGCA
TTCATAG
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