Gvermi12279.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12279.t1
Unique NameGvermi12279.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4084750..4085412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT484CT
Preferred nameGFER
PFAMsEvr1_Alr
Max annot lvl2759|Eukaryota
KEGG koko:K17783
GOsGO:0000166,GO:0001889,GO:0001910,GO:0001911,GO:0002237,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002715,GO:0002716,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009636,GO:0009719,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010556,GO:0010557,GO:0010604,GO:0010941,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0016670,GO:0016971,GO:0016972,GO:0019219,GO:0019222,GO:0031099,GO:0031100,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031341,GO:0031342,GO:0031347,GO:0031348,GO:0032496,GO:0032501,GO:0032502,GO:0033993,GO:0034097,GO:0034612,GO:0036094,GO:0040007,GO:0042060,GO:0042221,GO:0042246,GO:0042269,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045824,GO:0045935,GO:0045953,GO:0046677,GO:0048037,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048732,GO:0048856,GO:0050660,GO:0050662,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071236,GO:0071310,GO:0071345,GO:0071356,GO:0071396,GO:0071417,GO:0071495,GO:0072716,GO:0072717,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097237,GO:0097421,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204,GO:2000112,GO:2000278,GO:2000573
Evalue2.66e-34
EggNOG OGsCOG5054@1|root,KOG3355@2759|Eukaryota
EC1.8.3.2
Descriptionflavin-linked sulfhydryl oxidase activity
COG categoryO
BRITEko00000,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12279Gvermi12279Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4084750..4085412 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12279.t1.stop1Gvermi12279.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4084750..4084752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12279.t1.CDS1Gvermi12279.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4084750..4085412 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12279.t1.exon1Gvermi12279.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4084750..4085412 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12279.t1.start1Gvermi12279.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4085410..4085412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12279.t1Gvermi12279.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4084750..4085412 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12279.t1 ID=Gvermi12279.t1|Name=Gvermi12279.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=221bp
MKERPHQTALPHASRIHFAPPRQTAPACMAALAPLLTVVGIALVFISLYV
DVELMRPTYLASALAAPLSRTAYPSFSELYADAPSSLTMSNPTGVKRMSS
SSSRQPQPPSKKEIGNAGWTLIHAIAANFPEKPSEKEMHHARAFLRSMTK
LYPCKRCRHHFSKYLASTPPDLSNRESFMIWACGAHNAVNERQGKQVFPC
DMKTLEARWGDCGCSFKSTK*
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spliced messenger RNA

>Gvermi12279.t1 ID=Gvermi12279.t1|Name=Gvermi12279.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_3404:4084750..4085412- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGAGCGGCCGCACCAAACCGCGCTCCCGCACGCGTCGCGCATCCA
TTTTGCTCCACCGCGTCAAACCGCTCCGGCGTGCATGGCGGCTCTCGCAC
CGCTGCTTACAGTTGTTGGAATAGCGCTCGTGTTTATATCTCTGTATGTA
GACGTCGAGTTAATGCGCCCGACCTATCTGGCTTCAGCGCTCGCCGCCCC
TCTGTCGCGAACCGCCTACCCCTCGTTCAGCGAGCTCTACGCCGACGCAC
CCAGTTCGCTCACCATGTCGAATCCCACAGGAGTGAAGAGAATGTCCTCC
AGCAGCTCGCGCCAGCCACAGCCGCCCTCCAAGAAGGAGATAGGCAACGC
AGGCTGGACCCTCATCCACGCTATCGCCGCCAACTTTCCAGAAAAGCCTT
CCGAGAAAGAAATGCACCACGCCAGAGCCTTTCTCCGCAGTATGACAAAG
TTGTACCCTTGTAAAAGGTGCCGCCACCATTTCAGCAAGTATCTCGCCTC
CACACCCCCGGACCTTTCCAACAGAGAGTCTTTCATGATATGGGCTTGTG
GCGCTCACAATGCCGTCAACGAACGGCAGGGCAAACAGGTGTTTCCATGC
GATATGAAGACGCTGGAAGCCAGGTGGGGCGACTGTGGCTGTTCATTCAA
GAGTACCAAGTAA
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protein sequence of Gvermi12279.t1

>Gvermi12279.t1 ID=Gvermi12279.t1|Name=Gvermi12279.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=221bp
MKERPHQTALPHASRIHFAPPRQTAPACMAALAPLLTVVGIALVFISLYV
DVELMRPTYLASALAAPLSRTAYPSFSELYADAPSSLTMSNPTGVKRMSS
SSSRQPQPPSKKEIGNAGWTLIHAIAANFPEKPSEKEMHHARAFLRSMTK
LYPCKRCRHHFSKYLASTPPDLSNRESFMIWACGAHNAVNERQGKQVFPC
DMKTLEARWGDCGCSFKSTK*
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mRNA from alignment at ScGOVlb_3404:4084750..4085412-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12279.t1 ID=Gvermi12279.t1|Name=Gvermi12279.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_3404:4084750..4085412- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGAGCGGCCGCACCAAACCGCGCTCCCGCACGCGTCGCGCATCCA
TTTTGCTCCACCGCGTCAAACCGCTCCGGCGTGCATGGCGGCTCTCGCAC
CGCTGCTTACAGTTGTTGGAATAGCGCTCGTGTTTATATCTCTGTATGTA
GACGTCGAGTTAATGCGCCCGACCTATCTGGCTTCAGCGCTCGCCGCCCC
TCTGTCGCGAACCGCCTACCCCTCGTTCAGCGAGCTCTACGCCGACGCAC
CCAGTTCGCTCACCATGTCGAATCCCACAGGAGTGAAGAGAATGTCCTCC
AGCAGCTCGCGCCAGCCACAGCCGCCCTCCAAGAAGGAGATAGGCAACGC
AGGCTGGACCCTCATCCACGCTATCGCCGCCAACTTTCCAGAAAAGCCTT
CCGAGAAAGAAATGCACCACGCCAGAGCCTTTCTCCGCAGTATGACAAAG
TTGTACCCTTGTAAAAGGTGCCGCCACCATTTCAGCAAGTATCTCGCCTC
CACACCCCCGGACCTTTCCAACAGAGAGTCTTTCATGATATGGGCTTGTG
GCGCTCACAATGCCGTCAACGAACGGCAGGGCAAACAGGTGTTTCCATGC
GATATGAAGACGCTGGAAGCCAGGTGGGGCGACTGTGGCTGTTCATTCAA
GAGTACCAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4084750..4085412-

>Gvermi12279.t1 ID=Gvermi12279.t1|Name=Gvermi12279.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=663bp|location=Sequence derived from alignment at ScGOVlb_3404:4084750..4085412- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGAGCGGCCGCACCAAACCGCGCTCCCGCACGCGTCGCGCATCCA
TTTTGCTCCACCGCGTCAAACCGCTCCGGCGTGCATGGCGGCTCTCGCAC
CGCTGCTTACAGTTGTTGGAATAGCGCTCGTGTTTATATCTCTGTATGTA
GACGTCGAGTTAATGCGCCCGACCTATCTGGCTTCAGCGCTCGCCGCCCC
TCTGTCGCGAACCGCCTACCCCTCGTTCAGCGAGCTCTACGCCGACGCAC
CCAGTTCGCTCACCATGTCGAATCCCACAGGAGTGAAGAGAATGTCCTCC
AGCAGCTCGCGCCAGCCACAGCCGCCCTCCAAGAAGGAGATAGGCAACGC
AGGCTGGACCCTCATCCACGCTATCGCCGCCAACTTTCCAGAAAAGCCTT
CCGAGAAAGAAATGCACCACGCCAGAGCCTTTCTCCGCAGTATGACAAAG
TTGTACCCTTGTAAAAGGTGCCGCCACCATTTCAGCAAGTATCTCGCCTC
CACACCCCCGGACCTTTCCAACAGAGAGTCTTTCATGATATGGGCTTGTG
GCGCTCACAATGCCGTCAACGAACGGCAGGGCAAACAGGTGTTTCCATGC
GATATGAAGACGCTGGAAGCCAGGTGGGGCGACTGTGGCTGTTCATTCAA
GAGTACCAAGTAA
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