Gvermi12278.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12278.t1
Unique NameGvermi12278.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4083594..4084706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog211165.AJLN01000100_gene4141
Preferred namerbfA
PFAMsRBFA
Max annot lvl1117|Cyanobacteria
KEGG koko:K02834
Evalue1.4e-16
EggNOG OGsCOG0858@1|root,COG0858@2|Bacteria,1G6JJ@1117|Cyanobacteria,1JIM3@1189|Stigonemataceae
DescriptionRibosome-binding factor A
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12278Gvermi12278Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4083594..4084706 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12278.t1.start1Gvermi12278.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4083594..4083596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12278.t1.CDS1Gvermi12278.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4083594..4084706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12278.t1.exon1Gvermi12278.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4083594..4084706 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12278.t1.stop1Gvermi12278.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4084704..4084706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12278.t1Gvermi12278.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4083594..4084706 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12278.t1 ID=Gvermi12278.t1|Name=Gvermi12278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=371bp
MPPSVDPSVFFGNIDFLVNCLKLGDRRSSAIIDRTFIKSVRCAPVPPRSS
ARQLLASVSSAFRQFAQFEKLANLCGRLVAKTAEFEIKEADTPVTTLDSA
LAMEALAFASGMAVMQGFSSLRSSFTQNCTVHHSSRSQVHRTKLRRCDIY
CRRGSKHRDRRFGDGRRSNRVSELVKREISALIDDGYRRAFFHDKSAGPL
LLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARR
VYLKHTPELMFEESQMAEAVNTVNIINEIAAENERKREMADFSRGSQTKD
LYENDLFDKELELDASLDDAIIADDMEDYDDSGLVIDVEDADEDEECDES
HDKDIPRRTQRDMSRENLMR*
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spliced messenger RNA

>Gvermi12278.t1 ID=Gvermi12278.t1|Name=Gvermi12278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:4083594..4084706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCGTCCGTTGACCCATCTGTCTTCTTTGGAAACATCGATTTTCT
GGTGAATTGTCTGAAATTGGGCGACCGGAGATCAAGTGCCATCATTGACA
GAACCTTCATAAAATCAGTTCGCTGTGCTCCTGTACCTCCCAGGAGCTCT
GCAAGGCAATTATTGGCGTCTGTGTCTTCTGCATTTCGCCAGTTCGCTCA
GTTTGAAAAGCTCGCAAACTTGTGCGGAAGATTAGTCGCCAAAACAGCTG
AGTTTGAGATTAAGGAAGCGGATACGCCTGTGACAACACTCGACTCAGCA
CTCGCAATGGAGGCTCTCGCTTTCGCTTCAGGCATGGCAGTCATGCAAGG
GTTTAGTTCTCTTAGGAGTTCTTTTACTCAGAATTGTACGGTGCACCATA
GTTCTCGCTCTCAAGTCCATCGCACAAAGCTGCGAAGGTGTGATATTTAC
TGCCGTCGAGGATCGAAGCATCGAGATCGACGTTTTGGAGATGGACGAAG
ATCAAATCGTGTATCAGAGCTGGTAAAGCGAGAGATCTCCGCCCTGATTG
ACGATGGCTATAGACGTGCGTTTTTCCACGACAAGAGTGCAGGTCCCTTA
CTACTGAGCGTCGTTGACGTTCGATGCTCAGATGACTTAAGACATGCGCG
CGTGCAAGTTTCAATAATGGGGAGCACTGAACAGAAGGATAACACCATGA
AGTGGCTTCGCGGCGCAAGAAAAGGACTACGTGGAGATTTGGCGCGTCGA
GTTTACCTAAAACATACTCCTGAGCTGATGTTTGAAGAAAGCCAAATGGC
AGAAGCAGTGAATACGGTGAACATTATAAACGAGATTGCCGCAGAGAATG
AAAGAAAGCGTGAAATGGCTGACTTTAGTCGAGGAAGCCAGACCAAAGAC
CTCTACGAGAATGATCTATTCGACAAAGAGCTTGAGCTTGACGCTTCGCT
AGATGATGCAATTATTGCTGATGACATGGAAGATTATGACGATTCAGGGC
TTGTCATAGACGTTGAAGACGCAGACGAAGACGAGGAATGTGATGAAAGC
CATGACAAAGATATCCCTCGTAGGACACAGAGGGATATGAGCCGAGAAAA
TCTTATGAGATAG
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protein sequence of Gvermi12278.t1

>Gvermi12278.t1 ID=Gvermi12278.t1|Name=Gvermi12278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=371bp
MPPSVDPSVFFGNIDFLVNCLKLGDRRSSAIIDRTFIKSVRCAPVPPRSS
ARQLLASVSSAFRQFAQFEKLANLCGRLVAKTAEFEIKEADTPVTTLDSA
LAMEALAFASGMAVMQGFSSLRSSFTQNCTVHHSSRSQVHRTKLRRCDIY
CRRGSKHRDRRFGDGRRSNRVSELVKREISALIDDGYRRAFFHDKSAGPL
LLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARR
VYLKHTPELMFEESQMAEAVNTVNIINEIAAENERKREMADFSRGSQTKD
LYENDLFDKELELDASLDDAIIADDMEDYDDSGLVIDVEDADEDEECDES
HDKDIPRRTQRDMSRENLMR*
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mRNA from alignment at ScGOVlb_3404:4083594..4084706+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12278.t1 ID=Gvermi12278.t1|Name=Gvermi12278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:4083594..4084706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACCGTCCGTTGACCCATCTGTCTTCTTTGGAAACATCGATTTTCT
GGTGAATTGTCTGAAATTGGGCGACCGGAGATCAAGTGCCATCATTGACA
GAACCTTCATAAAATCAGTTCGCTGTGCTCCTGTACCTCCCAGGAGCTCT
GCAAGGCAATTATTGGCGTCTGTGTCTTCTGCATTTCGCCAGTTCGCTCA
GTTTGAAAAGCTCGCAAACTTGTGCGGAAGATTAGTCGCCAAAACAGCTG
AGTTTGAGATTAAGGAAGCGGATACGCCTGTGACAACACTCGACTCAGCA
CTCGCAATGGAGGCTCTCGCTTTCGCTTCAGGCATGGCAGTCATGCAAGG
GTTTAGTTCTCTTAGGAGTTCTTTTACTCAGAATTGTACGGTGCACCATA
GTTCTCGCTCTCAAGTCCATCGCACAAAGCTGCGAAGGTGTGATATTTAC
TGCCGTCGAGGATCGAAGCATCGAGATCGACGTTTTGGAGATGGACGAAG
ATCAAATCGTGTATCAGAGCTGGTAAAGCGAGAGATCTCCGCCCTGATTG
ACGATGGCTATAGACGTGCGTTTTTCCACGACAAGAGTGCAGGTCCCTTA
CTACTGAGCGTCGTTGACGTTCGATGCTCAGATGACTTAAGACATGCGCG
CGTGCAAGTTTCAATAATGGGGAGCACTGAACAGAAGGATAACACCATGA
AGTGGCTTCGCGGCGCAAGAAAAGGACTACGTGGAGATTTGGCGCGTCGA
GTTTACCTAAAACATACTCCTGAGCTGATGTTTGAAGAAAGCCAAATGGC
AGAAGCAGTGAATACGGTGAACATTATAAACGAGATTGCCGCAGAGAATG
AAAGAAAGCGTGAAATGGCTGACTTTAGTCGAGGAAGCCAGACCAAAGAC
CTCTACGAGAATGATCTATTCGACAAAGAGCTTGAGCTTGACGCTTCGCT
AGATGATGCAATTATTGCTGATGACATGGAAGATTATGACGATTCAGGGC
TTGTCATAGACGTTGAAGACGCAGACGAAGACGAGGAATGTGATGAAAGC
CATGACAAAGATATCCCTCGTAGGACACAGAGGGATATGAGCCGAGAAAA
TCTTATGAGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4083594..4084706+

>Gvermi12278.t1 ID=Gvermi12278.t1|Name=Gvermi12278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:4083594..4084706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACCGTCCGTTGACCCATCTGTCTTCTTTGGAAACATCGATTTTCT
GGTGAATTGTCTGAAATTGGGCGACCGGAGATCAAGTGCCATCATTGACA
GAACCTTCATAAAATCAGTTCGCTGTGCTCCTGTACCTCCCAGGAGCTCT
GCAAGGCAATTATTGGCGTCTGTGTCTTCTGCATTTCGCCAGTTCGCTCA
GTTTGAAAAGCTCGCAAACTTGTGCGGAAGATTAGTCGCCAAAACAGCTG
AGTTTGAGATTAAGGAAGCGGATACGCCTGTGACAACACTCGACTCAGCA
CTCGCAATGGAGGCTCTCGCTTTCGCTTCAGGCATGGCAGTCATGCAAGG
GTTTAGTTCTCTTAGGAGTTCTTTTACTCAGAATTGTACGGTGCACCATA
GTTCTCGCTCTCAAGTCCATCGCACAAAGCTGCGAAGGTGTGATATTTAC
TGCCGTCGAGGATCGAAGCATCGAGATCGACGTTTTGGAGATGGACGAAG
ATCAAATCGTGTATCAGAGCTGGTAAAGCGAGAGATCTCCGCCCTGATTG
ACGATGGCTATAGACGTGCGTTTTTCCACGACAAGAGTGCAGGTCCCTTA
CTACTGAGCGTCGTTGACGTTCGATGCTCAGATGACTTAAGACATGCGCG
CGTGCAAGTTTCAATAATGGGGAGCACTGAACAGAAGGATAACACCATGA
AGTGGCTTCGCGGCGCAAGAAAAGGACTACGTGGAGATTTGGCGCGTCGA
GTTTACCTAAAACATACTCCTGAGCTGATGTTTGAAGAAAGCCAAATGGC
AGAAGCAGTGAATACGGTGAACATTATAAACGAGATTGCCGCAGAGAATG
AAAGAAAGCGTGAAATGGCTGACTTTAGTCGAGGAAGCCAGACCAAAGAC
CTCTACGAGAATGATCTATTCGACAAAGAGCTTGAGCTTGACGCTTCGCT
AGATGATGCAATTATTGCTGATGACATGGAAGATTATGACGATTCAGGGC
TTGTCATAGACGTTGAAGACGCAGACGAAGACGAGGAATGTGATGAAAGC
CATGACAAAGATATCCCTCGTAGGACACAGAGGGATATGAGCCGAGAAAA
TCTTATGAGATAG
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