Gvermi12274.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12274.t1
Unique NameGvermi12274.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4077148..4077929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702813.1
PFAMsAmidohydro_1,PNP_UDP_1,RabGAP-TBC
Max annot lvl2759|Eukaryota
KEGG rclassRC00477
KEGG koko:K12960
KEGG ReactionR09660
KEGG Pathwayko00270,ko01100,map00270,map01100
Evalue3.15e-55
EggNOG OGsCOG0005@1|root,COG0402@1|root,KOG3968@2759|Eukaryota,KOG3985@2759|Eukaryota
EC3.5.4.28,3.5.4.31
DescriptionS-methyl-5-thioadenosine phosphorylase activity
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12274Gvermi12274Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4077148..4077929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12274.t1Gvermi12274.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4077148..4077929 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12274.t1.start1Gvermi12274.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4077148..4077150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12274.t1.CDS1Gvermi12274.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4077148..4077841 +
Gvermi12274.t1.CDS2Gvermi12274.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4077907..4077929 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12274.t1.exon1Gvermi12274.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4077148..4077841 +
Gvermi12274.t1.exon2Gvermi12274.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4077907..4077929 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12274.t1.intron1Gvermi12274.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4077842..4077906 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12274.t1.stop1Gvermi12274.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4077927..4077929 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12274.t1 ID=Gvermi12274.t1|Name=Gvermi12274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=239bp
MFSSLHAKTVSTPHGDVILHCDSERPDSVVFLQRHHADGAVGKDVYQPPH
LVNFRANMAAMAAEGVDKIIAVCCVGSLSKHIQIGTVVIPDDYVYMSGPS
VSYYDDARAHIVPSIDVHVRAELIEILNEEDALNLRKEGAVYVQTVGPRF
ETKAEVRFLSSLGDIIGMTGATEATLAKELAIPYAILAMVDNMANGLAEA
ELSKEQFNADVARNMKEVERCVAAVLKRFDPDGFGFVV*
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spliced messenger RNA

>Gvermi12274.t1 ID=Gvermi12274.t1|Name=Gvermi12274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=717bp|location=Sequence derived from alignment at ScGOVlb_3404:4077148..4077929+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCATCTCTGCATGCGAAAACGGTTAGCACGCCACATGGTGATGT
GATTTTGCACTGCGATTCTGAACGTCCTGATTCAGTTGTTTTCCTTCAAC
GTCACCATGCGGATGGAGCAGTCGGAAAGGATGTGTACCAACCACCGCAT
CTCGTCAATTTTCGAGCAAACATGGCCGCCATGGCCGCAGAAGGCGTTGA
TAAAATCATCGCTGTGTGTTGTGTTGGTTCCCTTTCAAAACATATTCAAA
TTGGCACCGTAGTGATTCCTGATGATTATGTCTACATGTCTGGTCCGTCA
GTTTCGTACTACGATGATGCAAGAGCGCACATTGTCCCAAGCATTGATGT
GCATGTCAGGGCGGAGTTGATAGAAATTCTAAATGAGGAAGATGCGTTGA
ATTTGCGAAAAGAGGGCGCCGTATATGTACAAACTGTTGGCCCAAGATTT
GAAACAAAGGCAGAAGTTCGATTTCTCTCATCACTTGGGGACATAATCGG
TATGACTGGAGCAACGGAAGCAACGCTTGCGAAGGAATTAGCAATTCCTT
ACGCCATTCTCGCCATGGTTGATAACATGGCGAATGGATTAGCAGAAGCT
GAATTATCCAAAGAGCAGTTTAATGCCGATGTGGCAAGGAATATGAAGGA
AGTTGAACGATGCGTGGCCGCAGTCCTGAAACGTTTCGATCCAGATGGAT
TCGGCTTTGTAGTTTAA
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protein sequence of Gvermi12274.t1

>Gvermi12274.t1 ID=Gvermi12274.t1|Name=Gvermi12274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=239bp
MFSSLHAKTVSTPHGDVILHCDSERPDSVVFLQRHHADGAVGKDVYQPPH
LVNFRANMAAMAAEGVDKIIAVCCVGSLSKHIQIGTVVIPDDYVYMSGPS
VSYYDDARAHIVPSIDVHVRAELIEILNEEDALNLRKEGAVYVQTVGPRF
ETKAEVRFLSSLGDIIGMTGATEATLAKELAIPYAILAMVDNMANGLAEA
ELSKEQFNADVARNMKEVERCVAAVLKRFDPDGFGFVV*
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mRNA from alignment at ScGOVlb_3404:4077148..4077929+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12274.t1 ID=Gvermi12274.t1|Name=Gvermi12274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=782bp|location=Sequence derived from alignment at ScGOVlb_3404:4077148..4077929+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCATCTCTGCATGCGAAAACGGTTAGCACGCCACATGGTGATGT
GATTTTGCACTGCGATTCTGAACGTCCTGATTCAGTTGTTTTCCTTCAAC
GTCACCATGCGGATGGAGCAGTCGGAAAGGATGTGTACCAACCACCGCAT
CTCGTCAATTTTCGAGCAAACATGGCCGCCATGGCCGCAGAAGGCGTTGA
TAAAATCATCGCTGTGTGTTGTGTTGGTTCCCTTTCAAAACATATTCAAA
TTGGCACCGTAGTGATTCCTGATGATTATGTCTACATGTCTGGTCCGTCA
GTTTCGTACTACGATGATGCAAGAGCGCACATTGTCCCAAGCATTGATGT
GCATGTCAGGGCGGAGTTGATAGAAATTCTAAATGAGGAAGATGCGTTGA
ATTTGCGAAAAGAGGGCGCCGTATATGTACAAACTGTTGGCCCAAGATTT
GAAACAAAGGCAGAAGTTCGATTTCTCTCATCACTTGGGGACATAATCGG
TATGACTGGAGCAACGGAAGCAACGCTTGCGAAGGAATTAGCAATTCCTT
ACGCCATTCTCGCCATGGTTGATAACATGGCGAATGGATTAGCAGAAGCT
GAATTATCCAAAGAGCAGTTTAATGCCGATGTGGCAAGGAATATGAAGGA
AGTTGAACGATGCGTGGCCGCAGTCCTGAAACGTTTCGATCCAGGTAGTG
TCAAAAACGGTCTAACCTGTTAAATATTAAATGGGTATTGGCAGGAGGAA
GATGCGCAGATGGATTCGGCTTTGTAGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4077148..4077929+

>Gvermi12274.t1 ID=Gvermi12274.t1|Name=Gvermi12274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=717bp|location=Sequence derived from alignment at ScGOVlb_3404:4077148..4077929+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCATCTCTGCATGCGAAAACGGTTAGCACGCCACATGGTGATGT
GATTTTGCACTGCGATTCTGAACGTCCTGATTCAGTTGTTTTCCTTCAAC
GTCACCATGCGGATGGAGCAGTCGGAAAGGATGTGTACCAACCACCGCAT
CTCGTCAATTTTCGAGCAAACATGGCCGCCATGGCCGCAGAAGGCGTTGA
TAAAATCATCGCTGTGTGTTGTGTTGGTTCCCTTTCAAAACATATTCAAA
TTGGCACCGTAGTGATTCCTGATGATTATGTCTACATGTCTGGTCCGTCA
GTTTCGTACTACGATGATGCAAGAGCGCACATTGTCCCAAGCATTGATGT
GCATGTCAGGGCGGAGTTGATAGAAATTCTAAATGAGGAAGATGCGTTGA
ATTTGCGAAAAGAGGGCGCCGTATATGTACAAACTGTTGGCCCAAGATTT
GAAACAAAGGCAGAAGTTCGATTTCTCTCATCACTTGGGGACATAATCGG
TATGACTGGAGCAACGGAAGCAACGCTTGCGAAGGAATTAGCAATTCCTT
ACGCCATTCTCGCCATGGTTGATAACATGGCGAATGGATTAGCAGAAGCT
GAATTATCCAAAGAGCAGTTTAATGCCGATGTGGCAAGGAATATGAAGGA
AGTTGAACGATGCGTGGCCGCAGTCCTGAAACGTTTCGATCCAGATGGAT
TCGGCTTTGTAGTTTAA
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