Gvermi12272.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12272.t1
Unique NameGvermi12272.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4072324..4073403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705865.1
Preferred namecdc16
PFAMsRabGAP-TBC
Max annot lvl2759|Eukaryota
KEGG koko:K02179
KEGG Pathwayko04111,map04111
GOsGO:0000075,GO:0000079,GO:0000278,GO:0000910,GO:0001100,GO:0001932,GO:0001934,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005856,GO:0006810,GO:0006886,GO:0007049,GO:0007088,GO:0007093,GO:0007096,GO:0007346,GO:0008047,GO:0008104,GO:0008150,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010948,GO:0010965,GO:0010974,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0017016,GO:0017137,GO:0019220,GO:0019222,GO:0019899,GO:0022402,GO:0023051,GO:0023057,GO:0030071,GO:0030234,GO:0030695,GO:0031029,GO:0031030,GO:0031267,GO:0031323,GO:0031325,GO:0031338,GO:0031399,GO:0031401,GO:0031577,GO:0031578,GO:0031991,GO:0032268,GO:0032270,GO:0032465,GO:0032466,GO:0032506,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033674,GO:0034613,GO:0042325,GO:0042327,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0043549,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044732,GO:0045184,GO:0045737,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045860,GO:0045930,GO:0045937,GO:0046578,GO:0046580,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051056,GO:0051058,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051302,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051493,GO:0051641,GO:0051649,GO:0051726,GO:0051782,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060341,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071174,GO:0071702,GO:0071705,GO:0071900,GO:0071902,GO:0080090,GO:0090630,GO:0098772,GO:0110020,GO:0150005,GO:1901891,GO:1901892,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902363,GO:1902364,GO:1902412,GO:1902413,GO:1902531,GO:1902532,GO:1902542,GO:1902543,GO:1902773,GO:1903047,GO:1903436,GO:1903437,GO:1903827,GO:1903828,GO:1904029,GO:1904031,GO:1905818,GO:1905819,GO:1990334,GO:2000816,GO:2001251
Evalue1.62e-69
EggNOG OGsCOG5210@1|root,KOG2058@2759|Eukaryota
Descriptionactivation of GTPase activity
COG categoryC
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12272Gvermi12272Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4072324..4073403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12272.t1.stop1Gvermi12272.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4072324..4072326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12272.t1.CDS1Gvermi12272.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4072324..4073403 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12272.t1.exon1Gvermi12272.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4072324..4073403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12272.t1.start1Gvermi12272.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4073401..4073403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12272.t1Gvermi12272.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4072324..4073403 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12272.t1 ID=Gvermi12272.t1|Name=Gvermi12272.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp
MGMRNMNLRKPYEEILNSEGPTSLDSLRRLVLLEGLPSDANELNTADFGR
CSLRGIVWKALLGVGVVDVNEYAFLVRKGPSSDDSRVREDARRTFSKSDD
FITRVPTEKIIRVLNAYVWSCDNQRGIYAQSMSLLAAPFLYVMPEPDAFH
CFRVFLERKVPSYVKRYSGARYGCELLEKCLMATHPKLHQLFAKRGLNPE
VYAFPSISSLGACVQPMSDTVRLWDIQLAYGVHMHILFTLARLHLASETI
FESARHSSSTPLITRELEQGLGIDAETVLASAVPLVGKLDSNLYTQLVSH
SVTLPESESSQRLGPSLNRRVMERFDLVQTMKSPLPSISPTRTSEDGHGS
SNSSHNDGK*
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spliced messenger RNA

>Gvermi12272.t1 ID=Gvermi12272.t1|Name=Gvermi12272.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_3404:4072324..4073403- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATGAGAAACATGAACCTCCGAAAGCCTTACGAAGAGATTCTTAA
CTCTGAAGGCCCAACTAGTCTTGACTCACTTCGAAGGCTTGTATTGCTCG
AAGGGCTCCCGAGCGACGCAAATGAGCTGAACACCGCAGATTTTGGCCGA
TGCTCCCTTCGAGGTATAGTTTGGAAAGCGCTGCTGGGAGTTGGAGTTGT
CGACGTCAATGAGTATGCTTTCCTAGTTCGGAAAGGCCCATCGTCAGATG
ATTCTCGAGTCAGAGAAGATGCACGTAGGACCTTTTCGAAAAGCGACGAT
TTCATCACTCGCGTCCCAACAGAAAAGATAATACGAGTGCTCAATGCGTA
TGTTTGGTCATGTGACAATCAACGTGGTATCTACGCACAAAGCATGAGTT
TGCTTGCGGCGCCTTTTCTGTACGTCATGCCCGAACCCGATGCTTTTCAT
TGCTTTCGGGTTTTCCTAGAGCGCAAGGTTCCGTCTTATGTTAAACGGTA
TTCTGGAGCGCGATATGGCTGTGAACTTCTTGAGAAATGTCTGATGGCAA
CCCACCCCAAGCTACACCAGTTGTTTGCCAAGCGTGGTTTGAATCCAGAA
GTGTACGCGTTCCCGTCAATATCATCGCTTGGTGCGTGTGTACAACCAAT
GTCCGACACGGTTCGGTTATGGGATATACAATTGGCATACGGCGTTCATA
TGCATATTCTTTTCACACTAGCCAGATTACACTTGGCGAGCGAAACCATA
TTTGAGTCAGCGCGTCATTCATCATCCACACCGCTGATCACTCGAGAGCT
AGAACAGGGTCTAGGGATAGATGCCGAGACTGTCCTTGCGAGCGCCGTAC
CTTTGGTTGGGAAGCTCGACTCCAACCTTTACACTCAACTTGTTTCACAT
TCGGTGACTTTACCTGAATCTGAAAGTTCCCAACGGCTGGGACCGTCTCT
TAACAGGCGCGTTATGGAGCGTTTCGATTTGGTACAAACGATGAAAAGCC
CTCTTCCGTCTATATCACCAACGCGAACTTCTGAAGATGGTCATGGCTCA
TCAAATTCGTCGCACAATGACGGAAAATAA
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protein sequence of Gvermi12272.t1

>Gvermi12272.t1 ID=Gvermi12272.t1|Name=Gvermi12272.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=360bp
MGMRNMNLRKPYEEILNSEGPTSLDSLRRLVLLEGLPSDANELNTADFGR
CSLRGIVWKALLGVGVVDVNEYAFLVRKGPSSDDSRVREDARRTFSKSDD
FITRVPTEKIIRVLNAYVWSCDNQRGIYAQSMSLLAAPFLYVMPEPDAFH
CFRVFLERKVPSYVKRYSGARYGCELLEKCLMATHPKLHQLFAKRGLNPE
VYAFPSISSLGACVQPMSDTVRLWDIQLAYGVHMHILFTLARLHLASETI
FESARHSSSTPLITRELEQGLGIDAETVLASAVPLVGKLDSNLYTQLVSH
SVTLPESESSQRLGPSLNRRVMERFDLVQTMKSPLPSISPTRTSEDGHGS
SNSSHNDGK*
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mRNA from alignment at ScGOVlb_3404:4072324..4073403-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12272.t1 ID=Gvermi12272.t1|Name=Gvermi12272.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_3404:4072324..4073403- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCATGAGAAACATGAACCTCCGAAAGCCTTACGAAGAGATTCTTAA
CTCTGAAGGCCCAACTAGTCTTGACTCACTTCGAAGGCTTGTATTGCTCG
AAGGGCTCCCGAGCGACGCAAATGAGCTGAACACCGCAGATTTTGGCCGA
TGCTCCCTTCGAGGTATAGTTTGGAAAGCGCTGCTGGGAGTTGGAGTTGT
CGACGTCAATGAGTATGCTTTCCTAGTTCGGAAAGGCCCATCGTCAGATG
ATTCTCGAGTCAGAGAAGATGCACGTAGGACCTTTTCGAAAAGCGACGAT
TTCATCACTCGCGTCCCAACAGAAAAGATAATACGAGTGCTCAATGCGTA
TGTTTGGTCATGTGACAATCAACGTGGTATCTACGCACAAAGCATGAGTT
TGCTTGCGGCGCCTTTTCTGTACGTCATGCCCGAACCCGATGCTTTTCAT
TGCTTTCGGGTTTTCCTAGAGCGCAAGGTTCCGTCTTATGTTAAACGGTA
TTCTGGAGCGCGATATGGCTGTGAACTTCTTGAGAAATGTCTGATGGCAA
CCCACCCCAAGCTACACCAGTTGTTTGCCAAGCGTGGTTTGAATCCAGAA
GTGTACGCGTTCCCGTCAATATCATCGCTTGGTGCGTGTGTACAACCAAT
GTCCGACACGGTTCGGTTATGGGATATACAATTGGCATACGGCGTTCATA
TGCATATTCTTTTCACACTAGCCAGATTACACTTGGCGAGCGAAACCATA
TTTGAGTCAGCGCGTCATTCATCATCCACACCGCTGATCACTCGAGAGCT
AGAACAGGGTCTAGGGATAGATGCCGAGACTGTCCTTGCGAGCGCCGTAC
CTTTGGTTGGGAAGCTCGACTCCAACCTTTACACTCAACTTGTTTCACAT
TCGGTGACTTTACCTGAATCTGAAAGTTCCCAACGGCTGGGACCGTCTCT
TAACAGGCGCGTTATGGAGCGTTTCGATTTGGTACAAACGATGAAAAGCC
CTCTTCCGTCTATATCACCAACGCGAACTTCTGAAGATGGTCATGGCTCA
TCAAATTCGTCGCACAATGACGGAAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4072324..4073403-

>Gvermi12272.t1 ID=Gvermi12272.t1|Name=Gvermi12272.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1080bp|location=Sequence derived from alignment at ScGOVlb_3404:4072324..4073403- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCATGAGAAACATGAACCTCCGAAAGCCTTACGAAGAGATTCTTAA
CTCTGAAGGCCCAACTAGTCTTGACTCACTTCGAAGGCTTGTATTGCTCG
AAGGGCTCCCGAGCGACGCAAATGAGCTGAACACCGCAGATTTTGGCCGA
TGCTCCCTTCGAGGTATAGTTTGGAAAGCGCTGCTGGGAGTTGGAGTTGT
CGACGTCAATGAGTATGCTTTCCTAGTTCGGAAAGGCCCATCGTCAGATG
ATTCTCGAGTCAGAGAAGATGCACGTAGGACCTTTTCGAAAAGCGACGAT
TTCATCACTCGCGTCCCAACAGAAAAGATAATACGAGTGCTCAATGCGTA
TGTTTGGTCATGTGACAATCAACGTGGTATCTACGCACAAAGCATGAGTT
TGCTTGCGGCGCCTTTTCTGTACGTCATGCCCGAACCCGATGCTTTTCAT
TGCTTTCGGGTTTTCCTAGAGCGCAAGGTTCCGTCTTATGTTAAACGGTA
TTCTGGAGCGCGATATGGCTGTGAACTTCTTGAGAAATGTCTGATGGCAA
CCCACCCCAAGCTACACCAGTTGTTTGCCAAGCGTGGTTTGAATCCAGAA
GTGTACGCGTTCCCGTCAATATCATCGCTTGGTGCGTGTGTACAACCAAT
GTCCGACACGGTTCGGTTATGGGATATACAATTGGCATACGGCGTTCATA
TGCATATTCTTTTCACACTAGCCAGATTACACTTGGCGAGCGAAACCATA
TTTGAGTCAGCGCGTCATTCATCATCCACACCGCTGATCACTCGAGAGCT
AGAACAGGGTCTAGGGATAGATGCCGAGACTGTCCTTGCGAGCGCCGTAC
CTTTGGTTGGGAAGCTCGACTCCAACCTTTACACTCAACTTGTTTCACAT
TCGGTGACTTTACCTGAATCTGAAAGTTCCCAACGGCTGGGACCGTCTCT
TAACAGGCGCGTTATGGAGCGTTTCGATTTGGTACAAACGATGAAAAGCC
CTCTTCCGTCTATATCACCAACGCGAACTTCTGAAGATGGTCATGGCTCA
TCAAATTCGTCGCACAATGACGGAAAATAA
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