Gvermi12268.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12268.t1
Unique NameGvermi12268.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4060971..4062562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5911.EAS02707
PFAMsAMPK1_CBM,Kelch_3,Kelch_4,Kelch_5
Max annot lvl5878|Ciliophora
KEGG koko:K20285
Evalue5.61e-14
EggNOG OGsKOG0379@1|root,KOG1616@1|root,KOG0379@2759|Eukaryota,KOG1616@2759|Eukaryota,3ZD0A@5878|Ciliophora
DescriptionGlycogen recognition site of AMP-activated protein kinase
COG categoryS
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12268Gvermi12268Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4060971..4062562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12268.t1Gvermi12268.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4060971..4062562 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12268.t1.start1Gvermi12268.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4060971..4060973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12268.t1.CDS1Gvermi12268.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4060971..4061877 +
Gvermi12268.t1.CDS2Gvermi12268.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4061973..4062562 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12268.t1.exon1Gvermi12268.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4060971..4061877 +
Gvermi12268.t1.exon2Gvermi12268.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4061973..4062562 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12268.t1.intron1Gvermi12268.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4061878..4061972 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12268.t1.stop1Gvermi12268.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4062560..4062562 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12268.t1 ID=Gvermi12268.t1|Name=Gvermi12268.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=499bp
MDLEHAVPTTFEYISQQHHESVLIKGSWDNWQSFAALQRNESNPNLWQVC
LTLSPETVLFKFVVDNEWLAAPNYPQISDGFGGLNNSLEIKPPKSDATHE
RDAQENDDQAHAPHSVPSAHASVHHITDLQIDHGNPEEKTTNPTKDMNFD
SREGSSTQHARAINRDESVYPTTKVTLSYPYSKQVKSVSVKGSWDGWEKY
SHMKQGEESENLHTILDLPAGKFIFKFIVDGKWTHSTEHEVISDGFGGHN
NVLTVSAPDVTTIATSEFSDTINSALPPHKSTVHEMKANPQQISVSSSET
EEAPKDNHPIEKLASCEDQDFSGKVTPPQGDESRGEQTNVVEQPCEVQTE
PEEDLCVDHYPMSGSAENLKQTSVSPNSLEMIDCQEETTDTVLNHVSKDS
SPKTRSPNDTPVTPNSEANDDQNRTPTKNEIGNTGDISDQDPDESSNEHV
DRDDEEKPKMENLSDAGENDGELTAEPETNDAEDGLLKKKSSGGCVIC*
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spliced messenger RNA

>Gvermi12268.t1 ID=Gvermi12268.t1|Name=Gvermi12268.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at ScGOVlb_3404:4060971..4062562+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTGGAGCATGCTGTTCCCACCACTTTCGAATATATTTCGCAGCA
GCATCATGAATCGGTTCTGATTAAGGGGTCGTGGGACAATTGGCAGTCCT
TCGCTGCGCTTCAGAGAAACGAAAGCAACCCCAATTTGTGGCAAGTATGT
CTCACACTCAGCCCTGAAACCGTTCTTTTCAAGTTTGTTGTGGACAACGA
GTGGCTCGCTGCGCCCAACTACCCGCAAATCTCTGATGGATTTGGTGGTC
TGAATAATTCACTGGAAATTAAACCCCCAAAAAGCGATGCCACCCATGAA
CGCGACGCGCAAGAAAATGATGACCAAGCTCATGCACCCCACTCCGTTCC
ATCTGCGCATGCATCCGTGCACCACATCACAGACTTGCAAATTGATCATG
GAAATCCAGAAGAGAAGACAACGAATCCAACAAAAGATATGAACTTCGAC
TCACGAGAGGGATCTTCAACCCAGCACGCTCGTGCAATAAACCGTGATGA
ATCGGTCTATCCGACTACGAAAGTCACATTATCATATCCGTATAGCAAGC
AGGTAAAGAGCGTATCCGTTAAAGGTTCATGGGATGGTTGGGAAAAGTAT
TCGCACATGAAACAGGGTGAGGAAAGCGAGAACCTGCATACCATTCTTGA
CCTTCCAGCGGGAAAATTCATCTTTAAGTTTATCGTCGATGGCAAGTGGA
CCCACAGCACGGAACACGAAGTAATATCCGACGGGTTTGGAGGACACAAC
AATGTTTTAACTGTGAGCGCACCTGATGTTACCACTATCGCCACATCAGA
GTTTAGCGATACGATCAATAGTGCTTTACCGCCTCACAAAAGTACTGTGC
ATGAAATGAAAGCTAATCCACAGCAAATTAGTGTTTCGTCCAGCGAGACA
GAAGAAGCTCCAAAAGATAACCACCCCATTGAAAAATTGGCAAGCTGTGA
AGACCAAGATTTCTCCGGGAAAGTAACCCCACCTCAAGGAGACGAAAGTA
GAGGTGAACAAACTAATGTTGTGGAGCAGCCATGTGAGGTCCAAACTGAA
CCTGAAGAAGACCTTTGTGTAGATCACTATCCGATGTCGGGAAGTGCCGA
AAATCTTAAACAAACATCCGTTTCTCCAAACAGTTTGGAGATGATTGATT
GTCAGGAAGAAACGACTGACACTGTATTAAACCATGTATCAAAAGATAGC
AGCCCGAAGACAAGAAGTCCTAATGACACACCCGTCACTCCGAACTCAGA
GGCCAATGACGATCAAAACCGTACGCCCACAAAGAATGAAATTGGAAATA
CCGGGGACATTTCTGACCAGGATCCGGATGAATCATCTAATGAACACGTT
GACCGAGACGATGAGGAAAAGCCCAAGATGGAGAATTTAAGTGACGCAGG
AGAGAATGATGGCGAATTAACAGCCGAACCGGAAACAAACGACGCAGAGG
ATGGATTACTAAAGAAGAAGAGTTCAGGAGGGTGTGTCATCTGCTGA
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protein sequence of Gvermi12268.t1

>Gvermi12268.t1 ID=Gvermi12268.t1|Name=Gvermi12268.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=499bp
MDLEHAVPTTFEYISQQHHESVLIKGSWDNWQSFAALQRNESNPNLWQVC
LTLSPETVLFKFVVDNEWLAAPNYPQISDGFGGLNNSLEIKPPKSDATHE
RDAQENDDQAHAPHSVPSAHASVHHITDLQIDHGNPEEKTTNPTKDMNFD
SREGSSTQHARAINRDESVYPTTKVTLSYPYSKQVKSVSVKGSWDGWEKY
SHMKQGEESENLHTILDLPAGKFIFKFIVDGKWTHSTEHEVISDGFGGHN
NVLTVSAPDVTTIATSEFSDTINSALPPHKSTVHEMKANPQQISVSSSET
EEAPKDNHPIEKLASCEDQDFSGKVTPPQGDESRGEQTNVVEQPCEVQTE
PEEDLCVDHYPMSGSAENLKQTSVSPNSLEMIDCQEETTDTVLNHVSKDS
SPKTRSPNDTPVTPNSEANDDQNRTPTKNEIGNTGDISDQDPDESSNEHV
DRDDEEKPKMENLSDAGENDGELTAEPETNDAEDGLLKKKSSGGCVIC*
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mRNA from alignment at ScGOVlb_3404:4060971..4062562+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12268.t1 ID=Gvermi12268.t1|Name=Gvermi12268.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1592bp|location=Sequence derived from alignment at ScGOVlb_3404:4060971..4062562+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCTGGAGCATGCTGTTCCCACCACTTTCGAATATATTTCGCAGCA
GCATCATGAATCGGTTCTGATTAAGGGGTCGTGGGACAATTGGCAGTCCT
TCGCTGCGCTTCAGAGAAACGAAAGCAACCCCAATTTGTGGCAAGTATGT
CTCACACTCAGCCCTGAAACCGTTCTTTTCAAGTTTGTTGTGGACAACGA
GTGGCTCGCTGCGCCCAACTACCCGCAAATCTCTGATGGATTTGGTGGTC
TGAATAATTCACTGGAAATTAAACCCCCAAAAAGCGATGCCACCCATGAA
CGCGACGCGCAAGAAAATGATGACCAAGCTCATGCACCCCACTCCGTTCC
ATCTGCGCATGCATCCGTGCACCACATCACAGACTTGCAAATTGATCATG
GAAATCCAGAAGAGAAGACAACGAATCCAACAAAAGATATGAACTTCGAC
TCACGAGAGGGATCTTCAACCCAGCACGCTCGTGCAATAAACCGTGATGA
ATCGGTCTATCCGACTACGAAAGTCACATTATCATATCCGTATAGCAAGC
AGGTAAAGAGCGTATCCGTTAAAGGTTCATGGGATGGTTGGGAAAAGTAT
TCGCACATGAAACAGGGTGAGGAAAGCGAGAACCTGCATACCATTCTTGA
CCTTCCAGCGGGAAAATTCATCTTTAAGTTTATCGTCGATGGCAAGTGGA
CCCACAGCACGGAACACGAAGTAATATCCGACGGGTTTGGAGGACACAAC
AATGTTTTAACTGTGAGCGCACCTGATGTTACCACTATCGCCACATCAGA
GTTTAGCGATACGATCAATAGTGCTTTACCGCCTCACAAAAGTACTGTGC
ATGAAATGAAAGCTAATCCACAGCAAATTAGTGTTTCGTCCAGCGAGACA
GAAGAAGGTACGTGCAATGGCAAAGAATCAAACTCTTTCTCCCGCCCGAC
TTCAGCAAACAGCATTTCTGACATCTTCATGCGTTTTCCTTATGGCAACC
AGCTCCAAAAGATAACCACCCCATTGAAAAATTGGCAAGCTGTGAAGACC
AAGATTTCTCCGGGAAAGTAACCCCACCTCAAGGAGACGAAAGTAGAGGT
GAACAAACTAATGTTGTGGAGCAGCCATGTGAGGTCCAAACTGAACCTGA
AGAAGACCTTTGTGTAGATCACTATCCGATGTCGGGAAGTGCCGAAAATC
TTAAACAAACATCCGTTTCTCCAAACAGTTTGGAGATGATTGATTGTCAG
GAAGAAACGACTGACACTGTATTAAACCATGTATCAAAAGATAGCAGCCC
GAAGACAAGAAGTCCTAATGACACACCCGTCACTCCGAACTCAGAGGCCA
ATGACGATCAAAACCGTACGCCCACAAAGAATGAAATTGGAAATACCGGG
GACATTTCTGACCAGGATCCGGATGAATCATCTAATGAACACGTTGACCG
AGACGATGAGGAAAAGCCCAAGATGGAGAATTTAAGTGACGCAGGAGAGA
ATGATGGCGAATTAACAGCCGAACCGGAAACAAACGACGCAGAGGATGGA
TTACTAAAGAAGAAGAGTTCAGGAGGGTGTGTCATCTGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4060971..4062562+

>Gvermi12268.t1 ID=Gvermi12268.t1|Name=Gvermi12268.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1497bp|location=Sequence derived from alignment at ScGOVlb_3404:4060971..4062562+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCTGGAGCATGCTGTTCCCACCACTTTCGAATATATTTCGCAGCA
GCATCATGAATCGGTTCTGATTAAGGGGTCGTGGGACAATTGGCAGTCCT
TCGCTGCGCTTCAGAGAAACGAAAGCAACCCCAATTTGTGGCAAGTATGT
CTCACACTCAGCCCTGAAACCGTTCTTTTCAAGTTTGTTGTGGACAACGA
GTGGCTCGCTGCGCCCAACTACCCGCAAATCTCTGATGGATTTGGTGGTC
TGAATAATTCACTGGAAATTAAACCCCCAAAAAGCGATGCCACCCATGAA
CGCGACGCGCAAGAAAATGATGACCAAGCTCATGCACCCCACTCCGTTCC
ATCTGCGCATGCATCCGTGCACCACATCACAGACTTGCAAATTGATCATG
GAAATCCAGAAGAGAAGACAACGAATCCAACAAAAGATATGAACTTCGAC
TCACGAGAGGGATCTTCAACCCAGCACGCTCGTGCAATAAACCGTGATGA
ATCGGTCTATCCGACTACGAAAGTCACATTATCATATCCGTATAGCAAGC
AGGTAAAGAGCGTATCCGTTAAAGGTTCATGGGATGGTTGGGAAAAGTAT
TCGCACATGAAACAGGGTGAGGAAAGCGAGAACCTGCATACCATTCTTGA
CCTTCCAGCGGGAAAATTCATCTTTAAGTTTATCGTCGATGGCAAGTGGA
CCCACAGCACGGAACACGAAGTAATATCCGACGGGTTTGGAGGACACAAC
AATGTTTTAACTGTGAGCGCACCTGATGTTACCACTATCGCCACATCAGA
GTTTAGCGATACGATCAATAGTGCTTTACCGCCTCACAAAAGTACTGTGC
ATGAAATGAAAGCTAATCCACAGCAAATTAGTGTTTCGTCCAGCGAGACA
GAAGAAGCTCCAAAAGATAACCACCCCATTGAAAAATTGGCAAGCTGTGA
AGACCAAGATTTCTCCGGGAAAGTAACCCCACCTCAAGGAGACGAAAGTA
GAGGTGAACAAACTAATGTTGTGGAGCAGCCATGTGAGGTCCAAACTGAA
CCTGAAGAAGACCTTTGTGTAGATCACTATCCGATGTCGGGAAGTGCCGA
AAATCTTAAACAAACATCCGTTTCTCCAAACAGTTTGGAGATGATTGATT
GTCAGGAAGAAACGACTGACACTGTATTAAACCATGTATCAAAAGATAGC
AGCCCGAAGACAAGAAGTCCTAATGACACACCCGTCACTCCGAACTCAGA
GGCCAATGACGATCAAAACCGTACGCCCACAAAGAATGAAATTGGAAATA
CCGGGGACATTTCTGACCAGGATCCGGATGAATCATCTAATGAACACGTT
GACCGAGACGATGAGGAAAAGCCCAAGATGGAGAATTTAAGTGACGCAGG
AGAGAATGATGGCGAATTAACAGCCGAACCGGAAACAAACGACGCAGAGG
ATGGATTACTAAAGAAGAAGAGTTCAGGAGGGTGTGTCATCTGCTGA
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