Gvermi12267.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12267.t1
Unique NameGvermi12267.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4058712..4059932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo137940
PFAMsDUF1771,Smr
Max annot lvl4776|Peronosporales
Evalue3.24e-28
EggNOG OGsKOG2401@1|root,KOG2401@2759|Eukaryota,3QB69@4776|Peronosporales
DescriptionDUF1771
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12267Gvermi12267Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4058712..4059932 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12267.t1.stop1Gvermi12267.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4058712..4058714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12267.t1.CDS1Gvermi12267.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4058712..4059932 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12267.t1.exon1Gvermi12267.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4058712..4059932 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12267.t1.start1Gvermi12267.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4059930..4059932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12267.t1Gvermi12267.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4058712..4059932 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12267.t1 ID=Gvermi12267.t1|Name=Gvermi12267.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=407bp
MQHGAHDQSGIHPKSVVQSENATANATVSYVTSNFNALSFADNPFYSPHP
FCNNLQQTYSPYGHNPPFEPSQLTQPDFDNTSHDPLQSYPYSYVQHPSDA
QSHEFFQPANPVSSPPKSTLNAHAPEFVPSFAVLPAEEPLPADHPLYNPP
PQFTPPETTVEHAVENFERQFPPLPGSKTSPDDKGKPVLRKALGWHEIEY
EKREKEKWQKHMDVQKNIIQTLQLVNESGEEQEETAPVSGDVGNVWVSTG
RSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREA
NERMKDLHRKAANAIFATRNPPHVHDVIDLHGLHVNEAIERLPSALEGKH
GRVRILTGTGHHTKGTGRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFI
VDIENR*
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spliced messenger RNA

>Gvermi12267.t1 ID=Gvermi12267.t1|Name=Gvermi12267.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:4058712..4059932- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCACGGGGCACATGACCAAAGTGGCATACACCCGAAATCCGTCGT
CCAGAGCGAAAACGCTACTGCCAATGCAACTGTCAGTTACGTCACATCAA
ACTTCAATGCTCTATCGTTCGCAGATAACCCATTCTACTCCCCACACCCG
TTTTGCAACAACCTTCAACAGACATATTCGCCTTACGGCCACAACCCCCC
CTTCGAACCCTCACAGCTCACGCAGCCGGACTTTGACAATACGTCACACG
ACCCCCTTCAATCTTATCCCTACTCATACGTACAGCACCCGTCAGATGCT
CAATCTCATGAATTCTTCCAGCCGGCAAACCCTGTGTCTTCCCCGCCAAA
GTCCACTCTTAACGCTCACGCCCCGGAGTTTGTCCCCTCATTTGCAGTCT
TGCCCGCAGAGGAACCTTTGCCGGCCGACCATCCTCTGTACAACCCACCT
CCGCAATTCACTCCCCCTGAAACCACAGTTGAACATGCGGTAGAAAACTT
TGAACGTCAATTCCCGCCGCTACCCGGCTCAAAGACCTCACCCGATGATA
AAGGGAAGCCCGTGTTGCGGAAGGCCCTGGGCTGGCACGAAATAGAATAT
GAGAAACGCGAGAAGGAGAAATGGCAGAAACACATGGACGTGCAAAAGAA
CATTATTCAGACGCTGCAACTCGTGAACGAAAGCGGAGAAGAACAGGAAG
AAACCGCGCCTGTATCAGGTGATGTAGGTAATGTTTGGGTGTCTACAGGC
CGTAGTGTTGCCGAGTTATATGAGGAACTGAGAGCTGAGGCGGCTGAACA
AGCCTCCATACGTAACAAGTACTTTGATAGGGCAGCCGCTGCCTTCAAGA
GAAACGACGGAGCAACTGCAAAAAAAATGGGCGCTTTAGGGAGAGAGGCT
AATGAAAGGATGAAAGATCTTCACCGCAAGGCAGCAAATGCTATTTTTGC
CACTAGAAATCCGCCTCACGTTCATGATGTCATTGACCTGCACGGTCTGC
ATGTAAACGAAGCTATAGAGAGATTGCCCTCTGCTTTAGAAGGTAAGCAT
GGAAGGGTTCGGATCCTTACTGGCACTGGGCACCACACAAAGGGCACTGG
CAGAGCAAGATTGCGGCCGGCAGTTAAAAAATGGTTGCAGGACAATGACT
ACTTTTTCGAAGAAGTTGTTGACGCCAATGAGTTTGTCGGCAGCTTCATT
GTTGACATCGAAAACCGGTAA
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protein sequence of Gvermi12267.t1

>Gvermi12267.t1 ID=Gvermi12267.t1|Name=Gvermi12267.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MQHGAHDQSGIHPKSVVQSENATANATVSYVTSNFNALSFADNPFYSPHP
FCNNLQQTYSPYGHNPPFEPSQLTQPDFDNTSHDPLQSYPYSYVQHPSDA
QSHEFFQPANPVSSPPKSTLNAHAPEFVPSFAVLPAEEPLPADHPLYNPP
PQFTPPETTVEHAVENFERQFPPLPGSKTSPDDKGKPVLRKALGWHEIEY
EKREKEKWQKHMDVQKNIIQTLQLVNESGEEQEETAPVSGDVGNVWVSTG
RSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREA
NERMKDLHRKAANAIFATRNPPHVHDVIDLHGLHVNEAIERLPSALEGKH
GRVRILTGTGHHTKGTGRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFI
VDIENR*
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mRNA from alignment at ScGOVlb_3404:4058712..4059932-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12267.t1 ID=Gvermi12267.t1|Name=Gvermi12267.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:4058712..4059932- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCACGGGGCACATGACCAAAGTGGCATACACCCGAAATCCGTCGT
CCAGAGCGAAAACGCTACTGCCAATGCAACTGTCAGTTACGTCACATCAA
ACTTCAATGCTCTATCGTTCGCAGATAACCCATTCTACTCCCCACACCCG
TTTTGCAACAACCTTCAACAGACATATTCGCCTTACGGCCACAACCCCCC
CTTCGAACCCTCACAGCTCACGCAGCCGGACTTTGACAATACGTCACACG
ACCCCCTTCAATCTTATCCCTACTCATACGTACAGCACCCGTCAGATGCT
CAATCTCATGAATTCTTCCAGCCGGCAAACCCTGTGTCTTCCCCGCCAAA
GTCCACTCTTAACGCTCACGCCCCGGAGTTTGTCCCCTCATTTGCAGTCT
TGCCCGCAGAGGAACCTTTGCCGGCCGACCATCCTCTGTACAACCCACCT
CCGCAATTCACTCCCCCTGAAACCACAGTTGAACATGCGGTAGAAAACTT
TGAACGTCAATTCCCGCCGCTACCCGGCTCAAAGACCTCACCCGATGATA
AAGGGAAGCCCGTGTTGCGGAAGGCCCTGGGCTGGCACGAAATAGAATAT
GAGAAACGCGAGAAGGAGAAATGGCAGAAACACATGGACGTGCAAAAGAA
CATTATTCAGACGCTGCAACTCGTGAACGAAAGCGGAGAAGAACAGGAAG
AAACCGCGCCTGTATCAGGTGATGTAGGTAATGTTTGGGTGTCTACAGGC
CGTAGTGTTGCCGAGTTATATGAGGAACTGAGAGCTGAGGCGGCTGAACA
AGCCTCCATACGTAACAAGTACTTTGATAGGGCAGCCGCTGCCTTCAAGA
GAAACGACGGAGCAACTGCAAAAAAAATGGGCGCTTTAGGGAGAGAGGCT
AATGAAAGGATGAAAGATCTTCACCGCAAGGCAGCAAATGCTATTTTTGC
CACTAGAAATCCGCCTCACGTTCATGATGTCATTGACCTGCACGGTCTGC
ATGTAAACGAAGCTATAGAGAGATTGCCCTCTGCTTTAGAAGGTAAGCAT
GGAAGGGTTCGGATCCTTACTGGCACTGGGCACCACACAAAGGGCACTGG
CAGAGCAAGATTGCGGCCGGCAGTTAAAAAATGGTTGCAGGACAATGACT
ACTTTTTCGAAGAAGTTGTTGACGCCAATGAGTTTGTCGGCAGCTTCATT
GTTGACATCGAAAACCGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4058712..4059932-

>Gvermi12267.t1 ID=Gvermi12267.t1|Name=Gvermi12267.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:4058712..4059932- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCACGGGGCACATGACCAAAGTGGCATACACCCGAAATCCGTCGT
CCAGAGCGAAAACGCTACTGCCAATGCAACTGTCAGTTACGTCACATCAA
ACTTCAATGCTCTATCGTTCGCAGATAACCCATTCTACTCCCCACACCCG
TTTTGCAACAACCTTCAACAGACATATTCGCCTTACGGCCACAACCCCCC
CTTCGAACCCTCACAGCTCACGCAGCCGGACTTTGACAATACGTCACACG
ACCCCCTTCAATCTTATCCCTACTCATACGTACAGCACCCGTCAGATGCT
CAATCTCATGAATTCTTCCAGCCGGCAAACCCTGTGTCTTCCCCGCCAAA
GTCCACTCTTAACGCTCACGCCCCGGAGTTTGTCCCCTCATTTGCAGTCT
TGCCCGCAGAGGAACCTTTGCCGGCCGACCATCCTCTGTACAACCCACCT
CCGCAATTCACTCCCCCTGAAACCACAGTTGAACATGCGGTAGAAAACTT
TGAACGTCAATTCCCGCCGCTACCCGGCTCAAAGACCTCACCCGATGATA
AAGGGAAGCCCGTGTTGCGGAAGGCCCTGGGCTGGCACGAAATAGAATAT
GAGAAACGCGAGAAGGAGAAATGGCAGAAACACATGGACGTGCAAAAGAA
CATTATTCAGACGCTGCAACTCGTGAACGAAAGCGGAGAAGAACAGGAAG
AAACCGCGCCTGTATCAGGTGATGTAGGTAATGTTTGGGTGTCTACAGGC
CGTAGTGTTGCCGAGTTATATGAGGAACTGAGAGCTGAGGCGGCTGAACA
AGCCTCCATACGTAACAAGTACTTTGATAGGGCAGCCGCTGCCTTCAAGA
GAAACGACGGAGCAACTGCAAAAAAAATGGGCGCTTTAGGGAGAGAGGCT
AATGAAAGGATGAAAGATCTTCACCGCAAGGCAGCAAATGCTATTTTTGC
CACTAGAAATCCGCCTCACGTTCATGATGTCATTGACCTGCACGGTCTGC
ATGTAAACGAAGCTATAGAGAGATTGCCCTCTGCTTTAGAAGGTAAGCAT
GGAAGGGTTCGGATCCTTACTGGCACTGGGCACCACACAAAGGGCACTGG
CAGAGCAAGATTGCGGCCGGCAGTTAAAAAATGGTTGCAGGACAATGACT
ACTTTTTCGAAGAAGTTGTTGACGCCAATGAGTTTGTCGGCAGCTTCATT
GTTGACATCGAAAACCGGTAA
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