Gvermi12266.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12266.t1
Unique NameGvermi12266.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4056808..4057713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706532.1
PFAMsIGPS
Max annot lvl2759|Eukaryota
Evalue5.29e-41
EggNOG OGsCOG0134@1|root,KOG4201@2759|Eukaryota
Descriptionindole-3-glycerol-phosphate synthase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12266Gvermi12266Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4056808..4057713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12266.t1.stop1Gvermi12266.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4056808..4056810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12266.t1.CDS1Gvermi12266.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4056808..4057713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12266.t1.exon1Gvermi12266.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4056808..4057713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12266.t1.start1Gvermi12266.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4057711..4057713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12266.t1Gvermi12266.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4056808..4057713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12266.t1 ID=Gvermi12266.t1|Name=Gvermi12266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=302bp
MGWKPSGLLREAVDLKKLEVELMETTLQERPDHPINMCRSFYANESSHRF
SKSLRRRDRTLSIVAAIKRFLLPRSGEAATKVADLEDIGRETRALNVCGV
DAALVCTDMLRYGVEVGELSKITGVLRTSNVDPGMPIARQDIIIDAVQIA
EAAVAGAAAVNIVAAAALPEIMELMNAATAMGVESVVECHTELERDFAMD
CGATILFLTNWDRSRNVLVPGTAERLIEGVPPWVLTIGGGGLMTARDCWK
FLDHGFNGVVLGKTLLQTRQPRTFIAEIRSQKREAGDLFAGDFGAPFPES
T*
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spliced messenger RNA

>Gvermi12266.t1 ID=Gvermi12266.t1|Name=Gvermi12266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=906bp|location=Sequence derived from alignment at ScGOVlb_3404:4056808..4057713- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTGGAAACCAAGCGGACTGCTGCGCGAAGCCGTGGATCTGAAAAA
GCTCGAAGTTGAGCTAATGGAAACCACTCTTCAAGAACGACCGGACCACC
CGATCAACATGTGCCGCTCTTTCTATGCCAATGAAAGTTCCCATCGATTT
TCGAAATCCTTGCGAAGACGAGATAGAACACTTTCCATTGTTGCTGCTAT
AAAAAGGTTTCTTCTTCCACGTTCAGGAGAAGCAGCAACCAAGGTCGCTG
ATTTAGAAGATATTGGGCGTGAAACAAGAGCTCTGAACGTATGTGGGGTC
GATGCAGCTTTGGTTTGTACCGATATGCTTCGCTACGGGGTTGAAGTTGG
AGAATTATCGAAGATCACTGGGGTCTTAAGGACCTCTAATGTTGATCCAG
GTATGCCAATTGCAAGGCAGGATATAATAATTGATGCAGTGCAGATTGCA
GAGGCTGCAGTCGCAGGTGCTGCAGCCGTAAACATAGTCGCTGCGGCGGC
ATTGCCCGAGATTATGGAACTCATGAATGCTGCAACGGCAATGGGTGTTG
AGTCTGTTGTTGAATGCCACACGGAATTAGAAAGAGACTTCGCGATGGAC
TGTGGAGCAACAATACTCTTTCTAACAAATTGGGATCGTTCCAGAAACGT
ATTGGTGCCAGGAACCGCGGAGAGATTGATAGAGGGGGTTCCGCCTTGGG
TGTTGACCATCGGCGGTGGTGGTTTGATGACCGCAAGAGATTGCTGGAAG
TTTCTTGATCATGGGTTTAATGGAGTTGTCTTGGGGAAAACTCTGTTACA
GACAAGGCAACCTCGCACCTTTATTGCTGAAATTCGTTCTCAAAAGCGCG
AAGCTGGCGATTTATTTGCTGGGGACTTTGGGGCACCATTTCCAGAGAGT
ACATAA
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protein sequence of Gvermi12266.t1

>Gvermi12266.t1 ID=Gvermi12266.t1|Name=Gvermi12266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=302bp
MGWKPSGLLREAVDLKKLEVELMETTLQERPDHPINMCRSFYANESSHRF
SKSLRRRDRTLSIVAAIKRFLLPRSGEAATKVADLEDIGRETRALNVCGV
DAALVCTDMLRYGVEVGELSKITGVLRTSNVDPGMPIARQDIIIDAVQIA
EAAVAGAAAVNIVAAAALPEIMELMNAATAMGVESVVECHTELERDFAMD
CGATILFLTNWDRSRNVLVPGTAERLIEGVPPWVLTIGGGGLMTARDCWK
FLDHGFNGVVLGKTLLQTRQPRTFIAEIRSQKREAGDLFAGDFGAPFPES
T*
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mRNA from alignment at ScGOVlb_3404:4056808..4057713-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12266.t1 ID=Gvermi12266.t1|Name=Gvermi12266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=906bp|location=Sequence derived from alignment at ScGOVlb_3404:4056808..4057713- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTGGAAACCAAGCGGACTGCTGCGCGAAGCCGTGGATCTGAAAAA
GCTCGAAGTTGAGCTAATGGAAACCACTCTTCAAGAACGACCGGACCACC
CGATCAACATGTGCCGCTCTTTCTATGCCAATGAAAGTTCCCATCGATTT
TCGAAATCCTTGCGAAGACGAGATAGAACACTTTCCATTGTTGCTGCTAT
AAAAAGGTTTCTTCTTCCACGTTCAGGAGAAGCAGCAACCAAGGTCGCTG
ATTTAGAAGATATTGGGCGTGAAACAAGAGCTCTGAACGTATGTGGGGTC
GATGCAGCTTTGGTTTGTACCGATATGCTTCGCTACGGGGTTGAAGTTGG
AGAATTATCGAAGATCACTGGGGTCTTAAGGACCTCTAATGTTGATCCAG
GTATGCCAATTGCAAGGCAGGATATAATAATTGATGCAGTGCAGATTGCA
GAGGCTGCAGTCGCAGGTGCTGCAGCCGTAAACATAGTCGCTGCGGCGGC
ATTGCCCGAGATTATGGAACTCATGAATGCTGCAACGGCAATGGGTGTTG
AGTCTGTTGTTGAATGCCACACGGAATTAGAAAGAGACTTCGCGATGGAC
TGTGGAGCAACAATACTCTTTCTAACAAATTGGGATCGTTCCAGAAACGT
ATTGGTGCCAGGAACCGCGGAGAGATTGATAGAGGGGGTTCCGCCTTGGG
TGTTGACCATCGGCGGTGGTGGTTTGATGACCGCAAGAGATTGCTGGAAG
TTTCTTGATCATGGGTTTAATGGAGTTGTCTTGGGGAAAACTCTGTTACA
GACAAGGCAACCTCGCACCTTTATTGCTGAAATTCGTTCTCAAAAGCGCG
AAGCTGGCGATTTATTTGCTGGGGACTTTGGGGCACCATTTCCAGAGAGT
ACATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4056808..4057713-

>Gvermi12266.t1 ID=Gvermi12266.t1|Name=Gvermi12266.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=906bp|location=Sequence derived from alignment at ScGOVlb_3404:4056808..4057713- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTGGAAACCAAGCGGACTGCTGCGCGAAGCCGTGGATCTGAAAAA
GCTCGAAGTTGAGCTAATGGAAACCACTCTTCAAGAACGACCGGACCACC
CGATCAACATGTGCCGCTCTTTCTATGCCAATGAAAGTTCCCATCGATTT
TCGAAATCCTTGCGAAGACGAGATAGAACACTTTCCATTGTTGCTGCTAT
AAAAAGGTTTCTTCTTCCACGTTCAGGAGAAGCAGCAACCAAGGTCGCTG
ATTTAGAAGATATTGGGCGTGAAACAAGAGCTCTGAACGTATGTGGGGTC
GATGCAGCTTTGGTTTGTACCGATATGCTTCGCTACGGGGTTGAAGTTGG
AGAATTATCGAAGATCACTGGGGTCTTAAGGACCTCTAATGTTGATCCAG
GTATGCCAATTGCAAGGCAGGATATAATAATTGATGCAGTGCAGATTGCA
GAGGCTGCAGTCGCAGGTGCTGCAGCCGTAAACATAGTCGCTGCGGCGGC
ATTGCCCGAGATTATGGAACTCATGAATGCTGCAACGGCAATGGGTGTTG
AGTCTGTTGTTGAATGCCACACGGAATTAGAAAGAGACTTCGCGATGGAC
TGTGGAGCAACAATACTCTTTCTAACAAATTGGGATCGTTCCAGAAACGT
ATTGGTGCCAGGAACCGCGGAGAGATTGATAGAGGGGGTTCCGCCTTGGG
TGTTGACCATCGGCGGTGGTGGTTTGATGACCGCAAGAGATTGCTGGAAG
TTTCTTGATCATGGGTTTAATGGAGTTGTCTTGGGGAAAACTCTGTTACA
GACAAGGCAACCTCGCACCTTTATTGCTGAAATTCGTTCTCAAAAGCGCG
AAGCTGGCGATTTATTTGCTGGGGACTTTGGGGCACCATTTCCAGAGAGT
ACATAA
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