Gvermi12265.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12265.t1
Unique NameGvermi12265.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4055393..4056328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT435CT
Preferred nameMCS
PFAMsYgbB
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC01440
KEGG koko:K01770
KEGG ReactionR05637
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0015994,GO:0015995,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue8.73e-110
EggNOG OGsCOG0245@1|root,2QS77@2759|Eukaryota
EC4.6.1.12
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
COG categoryI
BiGG ReactioniRC1080.CRv4_Au5_s12_g3144_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12265Gvermi12265Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4055393..4056328 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12265.t1.start1Gvermi12265.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4055393..4055395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12265.t1.CDS1Gvermi12265.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4055393..4056328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12265.t1.exon1Gvermi12265.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4055393..4056328 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12265.t1.stop1Gvermi12265.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4056326..4056328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12265.t1Gvermi12265.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4055393..4056328 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12265.t1 ID=Gvermi12265.t1|Name=Gvermi12265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=312bp
MTQSRVGHGFDLHRLEPGLPLILGGVELKHDKGCAGHSDGDAVYHCVVDA
VLGALSLPDIGQLFPDTDPRFKDCASHVFMEAAYERMQQKRYRIGNVDVT
IILEKPKLSPHKAEIRENIASLLHTSLDNINVKAKTHEKVDAVGENRAVS
VHAVALLISEDGVEIPSSREAFSSLPIEKSGSVADSLLGTISQRVSTIQD
ITVGNETQCPVQKLYESVEGRKGADPSSSWTAKLFSKGHQKIAQKVGEEG
VEVAIEGSARNVGGTIKESADLLYHLMVLWSELGIQPSDVWSELASREGT
SGIVEKASRPG*
back to top

spliced messenger RNA

>Gvermi12265.t1 ID=Gvermi12265.t1|Name=Gvermi12265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_3404:4055393..4056328+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAAAGCAGGGTGGGTCACGGTTTTGACTTACACCGCTTGGAACC
TGGACTCCCTCTAATTCTTGGTGGTGTGGAGCTGAAGCATGACAAGGGAT
GTGCCGGTCACTCGGATGGCGATGCAGTGTATCACTGTGTCGTAGATGCA
GTTTTAGGAGCTCTTTCATTACCGGACATTGGTCAACTCTTTCCGGACAC
CGATCCTCGCTTCAAGGACTGTGCGTCACACGTATTCATGGAAGCTGCTT
ATGAACGAATGCAGCAGAAACGATACAGAATAGGAAACGTTGATGTCACC
ATCATCTTGGAAAAGCCGAAACTATCGCCTCATAAGGCCGAAATACGAGA
AAATATTGCAAGTTTGCTTCATACAAGTCTGGACAATATAAATGTAAAAG
CAAAGACGCATGAGAAAGTTGATGCTGTGGGTGAGAATCGAGCTGTATCG
GTGCACGCAGTAGCGTTGCTAATATCTGAGGACGGGGTCGAAATTCCATC
GTCGAGAGAAGCGTTCTCCTCTTTACCTATTGAAAAATCTGGGTCTGTTG
CTGATTCGCTGTTGGGAACGATCAGCCAACGTGTATCAACCATACAAGAT
ATCACAGTGGGGAATGAAACCCAATGTCCCGTTCAAAAGCTTTACGAAAG
TGTAGAAGGGCGAAAGGGGGCAGACCCATCGTCTTCATGGACGGCAAAAC
TTTTCTCGAAAGGGCATCAGAAAATCGCGCAGAAAGTTGGAGAGGAAGGA
GTGGAAGTTGCGATTGAAGGAAGCGCGAGAAATGTAGGAGGGACAATCAA
AGAAAGTGCTGATCTTTTGTATCATCTCATGGTACTATGGTCGGAATTAG
GGATACAGCCAAGCGATGTATGGTCGGAGCTCGCGAGCAGGGAAGGGACT
AGCGGGATCGTTGAGAAAGCTTCCCGTCCAGGATGA
back to top

protein sequence of Gvermi12265.t1

>Gvermi12265.t1 ID=Gvermi12265.t1|Name=Gvermi12265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=312bp
MTQSRVGHGFDLHRLEPGLPLILGGVELKHDKGCAGHSDGDAVYHCVVDA
VLGALSLPDIGQLFPDTDPRFKDCASHVFMEAAYERMQQKRYRIGNVDVT
IILEKPKLSPHKAEIRENIASLLHTSLDNINVKAKTHEKVDAVGENRAVS
VHAVALLISEDGVEIPSSREAFSSLPIEKSGSVADSLLGTISQRVSTIQD
ITVGNETQCPVQKLYESVEGRKGADPSSSWTAKLFSKGHQKIAQKVGEEG
VEVAIEGSARNVGGTIKESADLLYHLMVLWSELGIQPSDVWSELASREGT
SGIVEKASRPG*
back to top

mRNA from alignment at ScGOVlb_3404:4055393..4056328+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12265.t1 ID=Gvermi12265.t1|Name=Gvermi12265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_3404:4055393..4056328+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCAAAGCAGGGTGGGTCACGGTTTTGACTTACACCGCTTGGAACC
TGGACTCCCTCTAATTCTTGGTGGTGTGGAGCTGAAGCATGACAAGGGAT
GTGCCGGTCACTCGGATGGCGATGCAGTGTATCACTGTGTCGTAGATGCA
GTTTTAGGAGCTCTTTCATTACCGGACATTGGTCAACTCTTTCCGGACAC
CGATCCTCGCTTCAAGGACTGTGCGTCACACGTATTCATGGAAGCTGCTT
ATGAACGAATGCAGCAGAAACGATACAGAATAGGAAACGTTGATGTCACC
ATCATCTTGGAAAAGCCGAAACTATCGCCTCATAAGGCCGAAATACGAGA
AAATATTGCAAGTTTGCTTCATACAAGTCTGGACAATATAAATGTAAAAG
CAAAGACGCATGAGAAAGTTGATGCTGTGGGTGAGAATCGAGCTGTATCG
GTGCACGCAGTAGCGTTGCTAATATCTGAGGACGGGGTCGAAATTCCATC
GTCGAGAGAAGCGTTCTCCTCTTTACCTATTGAAAAATCTGGGTCTGTTG
CTGATTCGCTGTTGGGAACGATCAGCCAACGTGTATCAACCATACAAGAT
ATCACAGTGGGGAATGAAACCCAATGTCCCGTTCAAAAGCTTTACGAAAG
TGTAGAAGGGCGAAAGGGGGCAGACCCATCGTCTTCATGGACGGCAAAAC
TTTTCTCGAAAGGGCATCAGAAAATCGCGCAGAAAGTTGGAGAGGAAGGA
GTGGAAGTTGCGATTGAAGGAAGCGCGAGAAATGTAGGAGGGACAATCAA
AGAAAGTGCTGATCTTTTGTATCATCTCATGGTACTATGGTCGGAATTAG
GGATACAGCCAAGCGATGTATGGTCGGAGCTCGCGAGCAGGGAAGGGACT
AGCGGGATCGTTGAGAAAGCTTCCCGTCCAGGATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4055393..4056328+

>Gvermi12265.t1 ID=Gvermi12265.t1|Name=Gvermi12265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=936bp|location=Sequence derived from alignment at ScGOVlb_3404:4055393..4056328+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCAAAGCAGGGTGGGTCACGGTTTTGACTTACACCGCTTGGAACC
TGGACTCCCTCTAATTCTTGGTGGTGTGGAGCTGAAGCATGACAAGGGAT
GTGCCGGTCACTCGGATGGCGATGCAGTGTATCACTGTGTCGTAGATGCA
GTTTTAGGAGCTCTTTCATTACCGGACATTGGTCAACTCTTTCCGGACAC
CGATCCTCGCTTCAAGGACTGTGCGTCACACGTATTCATGGAAGCTGCTT
ATGAACGAATGCAGCAGAAACGATACAGAATAGGAAACGTTGATGTCACC
ATCATCTTGGAAAAGCCGAAACTATCGCCTCATAAGGCCGAAATACGAGA
AAATATTGCAAGTTTGCTTCATACAAGTCTGGACAATATAAATGTAAAAG
CAAAGACGCATGAGAAAGTTGATGCTGTGGGTGAGAATCGAGCTGTATCG
GTGCACGCAGTAGCGTTGCTAATATCTGAGGACGGGGTCGAAATTCCATC
GTCGAGAGAAGCGTTCTCCTCTTTACCTATTGAAAAATCTGGGTCTGTTG
CTGATTCGCTGTTGGGAACGATCAGCCAACGTGTATCAACCATACAAGAT
ATCACAGTGGGGAATGAAACCCAATGTCCCGTTCAAAAGCTTTACGAAAG
TGTAGAAGGGCGAAAGGGGGCAGACCCATCGTCTTCATGGACGGCAAAAC
TTTTCTCGAAAGGGCATCAGAAAATCGCGCAGAAAGTTGGAGAGGAAGGA
GTGGAAGTTGCGATTGAAGGAAGCGCGAGAAATGTAGGAGGGACAATCAA
AGAAAGTGCTGATCTTTTGTATCATCTCATGGTACTATGGTCGGAATTAG
GGATACAGCCAAGCGATGTATGGTCGGAGCTCGCGAGCAGGGAAGGGACT
AGCGGGATCGTTGAGAAAGCTTCCCGTCCAGGATGA
back to top