Gvermi12263.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12263.t1
Unique NameGvermi12263.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4029166..4029981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog197221.22295948
PFAMsDUF1995
Max annot lvl1117|Cyanobacteria
Evalue0.000638
EggNOG OGs28IM3@1|root,2Z8MN@2|Bacteria,1G1IH@1117|Cyanobacteria
DescriptionInterPro IPR018962
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12263Gvermi12263Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4029166..4029981 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12263.t1.start1Gvermi12263.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4029166..4029168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12263.t1.CDS1Gvermi12263.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4029166..4029981 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12263.t1.exon1Gvermi12263.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4029166..4029981 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12263.t1.stop1Gvermi12263.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4029979..4029981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12263.t1Gvermi12263.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4029166..4029981 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12263.t1 ID=Gvermi12263.t1|Name=Gvermi12263.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=272bp
MKSNYLTAFAVHCSSVPTGVPSNAKAAASQIRQSIRTALITGRRRVCVDM
LLAAIDPRSRTFDDKAAEVVFHALVESMQPILKDSQPSVQVVVSGSSAAL
RVRKWLSRSEFHGVSVDVLGAEDRSKPHSVLVMDPPTGRGVLQLRELLRD
AHKKESHVVIHNQPREDSLYKLLGFGGYLPVEMMMYESAFVMAPFALQDP
EGTPSGRYVVLRQYPGAWQLWQYCGEESPVLAVGNARSEDGGSYKLCQEF
KRRPGSEELIQTIINVGRGGS*
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spliced messenger RNA

>Gvermi12263.t1 ID=Gvermi12263.t1|Name=Gvermi12263.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=816bp|location=Sequence derived from alignment at ScGOVlb_3404:4029166..4029981+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCTAACTATTTGACAGCTTTTGCCGTACACTGTTCATCTGTACC
CACAGGCGTTCCATCCAATGCCAAAGCAGCAGCTTCCCAAATTCGCCAAT
CAATACGAACCGCTCTAATAACGGGTCGCCGTCGCGTTTGTGTCGACATG
TTGCTCGCCGCCATAGATCCTCGATCCCGAACTTTCGACGATAAAGCCGC
AGAAGTCGTTTTTCATGCTTTAGTAGAATCTATGCAGCCAATACTTAAAG
ACTCCCAACCATCCGTGCAAGTGGTCGTCTCAGGATCTTCTGCAGCACTT
CGCGTGCGGAAATGGCTGTCACGCTCTGAGTTTCATGGTGTTTCCGTCGA
TGTTTTGGGTGCTGAAGATCGGTCCAAACCTCATTCCGTCTTAGTTATGG
ACCCACCAACCGGGCGGGGAGTGCTTCAGCTACGCGAACTACTTCGCGAT
GCCCACAAGAAAGAATCGCATGTAGTCATTCATAACCAGCCCAGAGAAGA
TTCGTTATACAAACTGCTAGGTTTCGGAGGATACCTTCCTGTGGAGATGA
TGATGTACGAATCAGCATTCGTGATGGCACCATTTGCGCTACAAGATCCT
GAAGGTACTCCGAGCGGAAGATATGTTGTCCTCAGACAATATCCTGGCGC
CTGGCAATTATGGCAGTACTGCGGTGAGGAGTCTCCAGTTCTGGCAGTTG
GCAATGCTCGTAGTGAAGACGGGGGTTCGTACAAACTCTGCCAGGAGTTC
AAGCGCCGACCTGGTAGTGAAGAATTAATTCAGACGATTATCAATGTAGG
GCGGGGGGGAAGTTGA
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protein sequence of Gvermi12263.t1

>Gvermi12263.t1 ID=Gvermi12263.t1|Name=Gvermi12263.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=272bp
MKSNYLTAFAVHCSSVPTGVPSNAKAAASQIRQSIRTALITGRRRVCVDM
LLAAIDPRSRTFDDKAAEVVFHALVESMQPILKDSQPSVQVVVSGSSAAL
RVRKWLSRSEFHGVSVDVLGAEDRSKPHSVLVMDPPTGRGVLQLRELLRD
AHKKESHVVIHNQPREDSLYKLLGFGGYLPVEMMMYESAFVMAPFALQDP
EGTPSGRYVVLRQYPGAWQLWQYCGEESPVLAVGNARSEDGGSYKLCQEF
KRRPGSEELIQTIINVGRGGS*
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mRNA from alignment at ScGOVlb_3404:4029166..4029981+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12263.t1 ID=Gvermi12263.t1|Name=Gvermi12263.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=816bp|location=Sequence derived from alignment at ScGOVlb_3404:4029166..4029981+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCTAACTATTTGACAGCTTTTGCCGTACACTGTTCATCTGTACC
CACAGGCGTTCCATCCAATGCCAAAGCAGCAGCTTCCCAAATTCGCCAAT
CAATACGAACCGCTCTAATAACGGGTCGCCGTCGCGTTTGTGTCGACATG
TTGCTCGCCGCCATAGATCCTCGATCCCGAACTTTCGACGATAAAGCCGC
AGAAGTCGTTTTTCATGCTTTAGTAGAATCTATGCAGCCAATACTTAAAG
ACTCCCAACCATCCGTGCAAGTGGTCGTCTCAGGATCTTCTGCAGCACTT
CGCGTGCGGAAATGGCTGTCACGCTCTGAGTTTCATGGTGTTTCCGTCGA
TGTTTTGGGTGCTGAAGATCGGTCCAAACCTCATTCCGTCTTAGTTATGG
ACCCACCAACCGGGCGGGGAGTGCTTCAGCTACGCGAACTACTTCGCGAT
GCCCACAAGAAAGAATCGCATGTAGTCATTCATAACCAGCCCAGAGAAGA
TTCGTTATACAAACTGCTAGGTTTCGGAGGATACCTTCCTGTGGAGATGA
TGATGTACGAATCAGCATTCGTGATGGCACCATTTGCGCTACAAGATCCT
GAAGGTACTCCGAGCGGAAGATATGTTGTCCTCAGACAATATCCTGGCGC
CTGGCAATTATGGCAGTACTGCGGTGAGGAGTCTCCAGTTCTGGCAGTTG
GCAATGCTCGTAGTGAAGACGGGGGTTCGTACAAACTCTGCCAGGAGTTC
AAGCGCCGACCTGGTAGTGAAGAATTAATTCAGACGATTATCAATGTAGG
GCGGGGGGGAAGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4029166..4029981+

>Gvermi12263.t1 ID=Gvermi12263.t1|Name=Gvermi12263.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=816bp|location=Sequence derived from alignment at ScGOVlb_3404:4029166..4029981+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCTAACTATTTGACAGCTTTTGCCGTACACTGTTCATCTGTACC
CACAGGCGTTCCATCCAATGCCAAAGCAGCAGCTTCCCAAATTCGCCAAT
CAATACGAACCGCTCTAATAACGGGTCGCCGTCGCGTTTGTGTCGACATG
TTGCTCGCCGCCATAGATCCTCGATCCCGAACTTTCGACGATAAAGCCGC
AGAAGTCGTTTTTCATGCTTTAGTAGAATCTATGCAGCCAATACTTAAAG
ACTCCCAACCATCCGTGCAAGTGGTCGTCTCAGGATCTTCTGCAGCACTT
CGCGTGCGGAAATGGCTGTCACGCTCTGAGTTTCATGGTGTTTCCGTCGA
TGTTTTGGGTGCTGAAGATCGGTCCAAACCTCATTCCGTCTTAGTTATGG
ACCCACCAACCGGGCGGGGAGTGCTTCAGCTACGCGAACTACTTCGCGAT
GCCCACAAGAAAGAATCGCATGTAGTCATTCATAACCAGCCCAGAGAAGA
TTCGTTATACAAACTGCTAGGTTTCGGAGGATACCTTCCTGTGGAGATGA
TGATGTACGAATCAGCATTCGTGATGGCACCATTTGCGCTACAAGATCCT
GAAGGTACTCCGAGCGGAAGATATGTTGTCCTCAGACAATATCCTGGCGC
CTGGCAATTATGGCAGTACTGCGGTGAGGAGTCTCCAGTTCTGGCAGTTG
GCAATGCTCGTAGTGAAGACGGGGGTTCGTACAAACTCTGCCAGGAGTTC
AAGCGCCGACCTGGTAGTGAAGAATTAATTCAGACGATTATCAATGTAGG
GCGGGGGGGAAGTTGA
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