Gvermi12257.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12257.t1
Unique Name	Gvermi12257.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	451

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3994937..3996289 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo4g195030.1
PFAMs	BCIP
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15262
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue	7.04e-18
EggNOG OGs	KOG3034@1\|root,KOG3034@2759\|Eukaryota,37PZM@33090\|Viridiplantae,3G76U@35493\|Streptophyta,3HZMH@3699\|Brassicales
Description	Protein BCCIP homolog
COG category	K
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12257	Gvermi12257	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3994937..3996289 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12257.t1.stop1	Gvermi12257.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3994937..3994939 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12257.t1.CDS1	Gvermi12257.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3994937..3996289 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12257.t1.exon1	Gvermi12257.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3994937..3996289 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12257.t1.start1	Gvermi12257.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3996287..3996289 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12257.t1	Gvermi12257.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3994937..3996289 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3994937..3996289-
coding sequence from alignment at ScGOVlb_3404:3994937..3996289-

mRNA sequence

>Gvermi12257.t1 ID=Gvermi12257.t1|Name=Gvermi12257.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=451bp
MVKNPSKVLTNRRQGNAVSLYSPTLQVNISLVCDKKVTRRDMGKRRRSGP
KKNNNKTTENGTGATGDQTSADAADDVAADCVHYASSEENAGNAQDERLR
GPGKALIGLGSDSDGIFDSDHVDENDEENEYAQDILLTRNKEDESDVELS
VEFFDPREADVNAVSMFVSKYCKACTCTSKGKEQVTTARAVAQAVCNQTR
VGTTLRLSEEEAPIGFISCLNVREHVKVLKDLKRKLIQVAEKEKNERFIT
LLNKCMEGSGRFESERMGLVLCERVMNMPTLVVANMLKGLLLEIEWATED
EKTQEQRDSFRFGWYLYISEVFCYEEEKEKDGSEGNKKKRQRVEKKAVDE
RVVFRRVEDSGWYEHATCSISWDWGGSEDGVKQKRMAMIVSAKKMEKIRE
MVEQSIGGGDVEEEEEEEVVEGEVTEGEVAEGEVSTAKKGEGTKRVGRTA
*

spliced messenger RNA

>Gvermi12257.t1 ID=Gvermi12257.t1|Name=Gvermi12257.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_3404:3994937..3996289- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGAATCCATCCAAAGTTTTGACGAACCGCCGCCAGGGCAATGC
GGTATCGCTTTATTCACCAACACTGCAGGTAAATATTTCTCTGGTGTGTG
ACAAAAAGGTTACCAGGCGCGACATGGGTAAACGGAGACGGAGTGGTCCC
AAGAAGAATAACAACAAAACAACTGAAAATGGTACTGGAGCGACAGGTGA
CCAGACCAGCGCAGATGCAGCGGACGATGTGGCCGCAGACTGCGTGCACT
ATGCATCATCAGAAGAGAATGCTGGGAATGCACAGGATGAGCGTTTGCGA
GGACCTGGCAAGGCGTTGATTGGATTAGGAAGCGACTCAGACGGCATTTT
TGACTCGGACCATGTTGACGAAAATGACGAAGAAAATGAATATGCACAGG
ATATCTTGTTAACGAGAAATAAGGAGGATGAGAGTGATGTAGAACTGAGC
GTAGAGTTTTTCGATCCACGCGAGGCTGACGTGAACGCAGTTTCCATGTT
TGTGTCAAAATATTGCAAAGCTTGCACCTGCACAAGCAAAGGAAAAGAGC
AAGTTACGACTGCGCGCGCTGTGGCGCAGGCCGTGTGCAACCAAACGCGA
GTCGGGACAACTCTTCGTCTAAGTGAAGAGGAGGCGCCAATTGGGTTCAT
ATCATGCTTGAACGTGCGCGAGCATGTAAAGGTGCTGAAGGACCTGAAAC
GAAAGTTGATTCAAGTGGCGGAAAAGGAGAAGAACGAGAGGTTCATTACT
CTTTTGAACAAGTGCATGGAGGGTAGTGGCAGGTTTGAAAGCGAGAGGAT
GGGACTGGTGCTGTGCGAGAGGGTGATGAACATGCCCACACTGGTTGTTG
CCAACATGCTGAAAGGGTTGTTGCTGGAAATTGAATGGGCAACTGAGGAT
GAGAAGACGCAGGAGCAAAGAGACTCTTTCAGATTCGGGTGGTACTTGTA
TATAAGTGAGGTGTTTTGCTACGAGGAGGAAAAGGAGAAGGACGGTAGTG
AGGGGAATAAGAAAAAGCGGCAGCGGGTGGAAAAGAAGGCCGTCGATGAG
CGCGTTGTATTCCGTCGAGTGGAGGACAGTGGGTGGTACGAGCACGCGAC
GTGTAGCATAAGCTGGGACTGGGGCGGATCTGAGGACGGGGTGAAGCAAA
AGCGCATGGCCATGATTGTATCTGCGAAGAAAATGGAGAAGATTCGCGAG
ATGGTGGAACAGAGCATAGGCGGAGGAGACGTGGAAGAGGAAGAGGAGGA
GGAGGTAGTCGAAGGGGAGGTAACCGAAGGGGAGGTAGCCGAAGGAGAGG
TGTCAACAGCCAAGAAAGGTGAGGGAACCAAACGGGTAGGACGGACGGCG
TAA

protein sequence of Gvermi12257.t1

>Gvermi12257.t1 ID=Gvermi12257.t1|Name=Gvermi12257.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=451bp
MVKNPSKVLTNRRQGNAVSLYSPTLQVNISLVCDKKVTRRDMGKRRRSGP
KKNNNKTTENGTGATGDQTSADAADDVAADCVHYASSEENAGNAQDERLR
GPGKALIGLGSDSDGIFDSDHVDENDEENEYAQDILLTRNKEDESDVELS
VEFFDPREADVNAVSMFVSKYCKACTCTSKGKEQVTTARAVAQAVCNQTR
VGTTLRLSEEEAPIGFISCLNVREHVKVLKDLKRKLIQVAEKEKNERFIT
LLNKCMEGSGRFESERMGLVLCERVMNMPTLVVANMLKGLLLEIEWATED
EKTQEQRDSFRFGWYLYISEVFCYEEEKEKDGSEGNKKKRQRVEKKAVDE
RVVFRRVEDSGWYEHATCSISWDWGGSEDGVKQKRMAMIVSAKKMEKIRE
MVEQSIGGGDVEEEEEEEVVEGEVTEGEVAEGEVSTAKKGEGTKRVGRTA
*

mRNA from alignment at ScGOVlb_3404:3994937..3996289-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12257.t1 ID=Gvermi12257.t1|Name=Gvermi12257.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_3404:3994937..3996289- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCAAGAATCCATCCAAAGTTTTGACGAACCGCCGCCAGGGCAATGC
GGTATCGCTTTATTCACCAACACTGCAGGTAAATATTTCTCTGGTGTGTG
ACAAAAAGGTTACCAGGCGCGACATGGGTAAACGGAGACGGAGTGGTCCC
AAGAAGAATAACAACAAAACAACTGAAAATGGTACTGGAGCGACAGGTGA
CCAGACCAGCGCAGATGCAGCGGACGATGTGGCCGCAGACTGCGTGCACT
ATGCATCATCAGAAGAGAATGCTGGGAATGCACAGGATGAGCGTTTGCGA
GGACCTGGCAAGGCGTTGATTGGATTAGGAAGCGACTCAGACGGCATTTT
TGACTCGGACCATGTTGACGAAAATGACGAAGAAAATGAATATGCACAGG
ATATCTTGTTAACGAGAAATAAGGAGGATGAGAGTGATGTAGAACTGAGC
GTAGAGTTTTTCGATCCACGCGAGGCTGACGTGAACGCAGTTTCCATGTT
TGTGTCAAAATATTGCAAAGCTTGCACCTGCACAAGCAAAGGAAAAGAGC
AAGTTACGACTGCGCGCGCTGTGGCGCAGGCCGTGTGCAACCAAACGCGA
GTCGGGACAACTCTTCGTCTAAGTGAAGAGGAGGCGCCAATTGGGTTCAT
ATCATGCTTGAACGTGCGCGAGCATGTAAAGGTGCTGAAGGACCTGAAAC
GAAAGTTGATTCAAGTGGCGGAAAAGGAGAAGAACGAGAGGTTCATTACT
CTTTTGAACAAGTGCATGGAGGGTAGTGGCAGGTTTGAAAGCGAGAGGAT
GGGACTGGTGCTGTGCGAGAGGGTGATGAACATGCCCACACTGGTTGTTG
CCAACATGCTGAAAGGGTTGTTGCTGGAAATTGAATGGGCAACTGAGGAT
GAGAAGACGCAGGAGCAAAGAGACTCTTTCAGATTCGGGTGGTACTTGTA
TATAAGTGAGGTGTTTTGCTACGAGGAGGAAAAGGAGAAGGACGGTAGTG
AGGGGAATAAGAAAAAGCGGCAGCGGGTGGAAAAGAAGGCCGTCGATGAG
CGCGTTGTATTCCGTCGAGTGGAGGACAGTGGGTGGTACGAGCACGCGAC
GTGTAGCATAAGCTGGGACTGGGGCGGATCTGAGGACGGGGTGAAGCAAA
AGCGCATGGCCATGATTGTATCTGCGAAGAAAATGGAGAAGATTCGCGAG
ATGGTGGAACAGAGCATAGGCGGAGGAGACGTGGAAGAGGAAGAGGAGGA
GGAGGTAGTCGAAGGGGAGGTAACCGAAGGGGAGGTAGCCGAAGGAGAGG
TGTCAACAGCCAAGAAAGGTGAGGGAACCAAACGGGTAGGACGGACGGCG
TAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3994937..3996289-

>Gvermi12257.t1 ID=Gvermi12257.t1|Name=Gvermi12257.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1353bp|location=Sequence derived from alignment at ScGOVlb_3404:3994937..3996289- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCAAGAATCCATCCAAAGTTTTGACGAACCGCCGCCAGGGCAATGC
GGTATCGCTTTATTCACCAACACTGCAGGTAAATATTTCTCTGGTGTGTG
ACAAAAAGGTTACCAGGCGCGACATGGGTAAACGGAGACGGAGTGGTCCC
AAGAAGAATAACAACAAAACAACTGAAAATGGTACTGGAGCGACAGGTGA
CCAGACCAGCGCAGATGCAGCGGACGATGTGGCCGCAGACTGCGTGCACT
ATGCATCATCAGAAGAGAATGCTGGGAATGCACAGGATGAGCGTTTGCGA
GGACCTGGCAAGGCGTTGATTGGATTAGGAAGCGACTCAGACGGCATTTT
TGACTCGGACCATGTTGACGAAAATGACGAAGAAAATGAATATGCACAGG
ATATCTTGTTAACGAGAAATAAGGAGGATGAGAGTGATGTAGAACTGAGC
GTAGAGTTTTTCGATCCACGCGAGGCTGACGTGAACGCAGTTTCCATGTT
TGTGTCAAAATATTGCAAAGCTTGCACCTGCACAAGCAAAGGAAAAGAGC
AAGTTACGACTGCGCGCGCTGTGGCGCAGGCCGTGTGCAACCAAACGCGA
GTCGGGACAACTCTTCGTCTAAGTGAAGAGGAGGCGCCAATTGGGTTCAT
ATCATGCTTGAACGTGCGCGAGCATGTAAAGGTGCTGAAGGACCTGAAAC
GAAAGTTGATTCAAGTGGCGGAAAAGGAGAAGAACGAGAGGTTCATTACT
CTTTTGAACAAGTGCATGGAGGGTAGTGGCAGGTTTGAAAGCGAGAGGAT
GGGACTGGTGCTGTGCGAGAGGGTGATGAACATGCCCACACTGGTTGTTG
CCAACATGCTGAAAGGGTTGTTGCTGGAAATTGAATGGGCAACTGAGGAT
GAGAAGACGCAGGAGCAAAGAGACTCTTTCAGATTCGGGTGGTACTTGTA
TATAAGTGAGGTGTTTTGCTACGAGGAGGAAAAGGAGAAGGACGGTAGTG
AGGGGAATAAGAAAAAGCGGCAGCGGGTGGAAAAGAAGGCCGTCGATGAG
CGCGTTGTATTCCGTCGAGTGGAGGACAGTGGGTGGTACGAGCACGCGAC
GTGTAGCATAAGCTGGGACTGGGGCGGATCTGAGGACGGGGTGAAGCAAA
AGCGCATGGCCATGATTGTATCTGCGAAGAAAATGGAGAAGATTCGCGAG
ATGGTGGAACAGAGCATAGGCGGAGGAGACGTGGAAGAGGAAGAGGAGGA
GGAGGTAGTCGAAGGGGAGGTAACCGAAGGGGAGGTAGCCGAAGGAGAGG
TGTCAACAGCCAAGAAAGGTGAGGGAACCAAACGGGTAGGACGGACGGCG
TAA