Gvermi12256.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12256.t1
Unique NameGvermi12256.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3988584..3989567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7955.ENSDARP00000125217
Preferred namePHRF1
PFAMsPHD,zf-RING_2
Max annot lvl33208|Metazoa
KEGG koko:K17586
GOsGO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007600,GO:0007605,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0019899,GO:0019904,GO:0032420,GO:0032421,GO:0032426,GO:0032501,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044463,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050877,GO:0050954,GO:0070063,GO:0071704,GO:0090304,GO:0097458,GO:0097659,GO:0098858,GO:0098862,GO:0120025,GO:0120038,GO:1901360,GO:1901362,GO:1901576
Evalue1.21e-05
EggNOG OGsKOG0825@1|root,KOG0825@2759|Eukaryota,38EN7@33154|Opisthokonta,3BF52@33208|Metazoa,3CUF1@33213|Bilateria,485Z7@7711|Chordata,48X2U@7742|Vertebrata,49TU8@7898|Actinopterygii
DescriptionPHD and RING finger
COG categoryO
BRITEko00000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12256Gvermi12256Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3988584..3989567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12256.t1.stop1Gvermi12256.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3988584..3988586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12256.t1.CDS1Gvermi12256.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3988584..3989567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12256.t1.exon1Gvermi12256.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3988584..3989567 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12256.t1.start1Gvermi12256.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3989565..3989567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12256.t1Gvermi12256.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3988584..3989567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12256.t1 ID=Gvermi12256.t1|Name=Gvermi12256.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MRVLPATQYAFRQATQELNTVAFPSAIRTLASVVASITMIVTIYLGYRKC
MRGRDDSFTAGRQQQQSLGIPLASYDAPGRTLSDEYLPVYVGNGRYIYVS
RNELPRDPPNVLRRDSNVPPRFDTSVLKKFEAANEERHQSCPICLEQLHE
EPVSAGQCLHLMHNSCLVSWLNKDANSNCPVCRVRIMESASFDGLGAKVT
ELVSVVQPVSETMERLNAESGPHREDDVRLLLADNSLGAQAETESASQRI
RNESIENDNENSAEHDYSQNANQRWEARNDEVTHQSRPHDSDAGVLSAQE
VMGSTIGGASGAVTRAGSDREVAVANN*
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spliced messenger RNA

>Gvermi12256.t1 ID=Gvermi12256.t1|Name=Gvermi12256.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:3988584..3989567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGTGTTGCCTGCCACGCAATATGCATTTCGTCAAGCCACTCAGGA
GCTCAACACTGTCGCGTTTCCATCGGCAATCCGCACGCTGGCTTCGGTTG
TTGCTTCCATAACGATGATTGTCACCATTTACCTCGGTTACCGAAAATGC
ATGAGGGGTCGAGATGATAGTTTCACCGCTGGCCGACAACAGCAGCAATC
ACTTGGCATTCCTCTTGCGTCTTACGATGCACCTGGAAGGACGTTATCAG
ACGAGTATTTGCCTGTTTACGTCGGGAATGGAAGATATATTTATGTCTCA
CGCAACGAACTTCCTCGTGACCCTCCAAATGTCCTACGGAGGGATTCCAA
CGTTCCACCACGGTTCGACACGAGCGTTTTGAAAAAGTTCGAAGCCGCGA
ACGAGGAAAGACATCAATCGTGTCCTATATGTCTCGAGCAATTGCATGAG
GAACCGGTGAGTGCTGGACAGTGTTTGCATCTTATGCATAACAGCTGTCT
CGTTAGTTGGTTGAACAAGGATGCAAACTCGAACTGTCCAGTTTGTCGAG
TTCGCATTATGGAAAGCGCATCTTTTGATGGATTAGGGGCGAAGGTGACC
GAATTGGTTTCCGTAGTACAGCCTGTGAGCGAAACAATGGAACGGTTAAA
TGCTGAAAGTGGGCCTCACAGAGAAGACGACGTAAGATTGCTACTGGCCG
ACAATAGTTTGGGTGCACAAGCCGAGACGGAATCGGCATCACAACGGATA
CGAAATGAATCGATAGAAAATGACAACGAGAACAGCGCGGAACATGACTA
TTCTCAAAATGCGAACCAAAGATGGGAAGCGAGGAATGATGAAGTTACCC
ATCAATCTAGACCACATGACTCCGACGCTGGCGTGCTGTCGGCGCAAGAG
GTAATGGGTTCAACAATCGGAGGAGCATCAGGAGCGGTGACCCGAGCGGG
TAGTGATCGAGAAGTGGCAGTAGCAAACAATTAA
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protein sequence of Gvermi12256.t1

>Gvermi12256.t1 ID=Gvermi12256.t1|Name=Gvermi12256.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MRVLPATQYAFRQATQELNTVAFPSAIRTLASVVASITMIVTIYLGYRKC
MRGRDDSFTAGRQQQQSLGIPLASYDAPGRTLSDEYLPVYVGNGRYIYVS
RNELPRDPPNVLRRDSNVPPRFDTSVLKKFEAANEERHQSCPICLEQLHE
EPVSAGQCLHLMHNSCLVSWLNKDANSNCPVCRVRIMESASFDGLGAKVT
ELVSVVQPVSETMERLNAESGPHREDDVRLLLADNSLGAQAETESASQRI
RNESIENDNENSAEHDYSQNANQRWEARNDEVTHQSRPHDSDAGVLSAQE
VMGSTIGGASGAVTRAGSDREVAVANN*
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mRNA from alignment at ScGOVlb_3404:3988584..3989567-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12256.t1 ID=Gvermi12256.t1|Name=Gvermi12256.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:3988584..3989567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGTGTTGCCTGCCACGCAATATGCATTTCGTCAAGCCACTCAGGA
GCTCAACACTGTCGCGTTTCCATCGGCAATCCGCACGCTGGCTTCGGTTG
TTGCTTCCATAACGATGATTGTCACCATTTACCTCGGTTACCGAAAATGC
ATGAGGGGTCGAGATGATAGTTTCACCGCTGGCCGACAACAGCAGCAATC
ACTTGGCATTCCTCTTGCGTCTTACGATGCACCTGGAAGGACGTTATCAG
ACGAGTATTTGCCTGTTTACGTCGGGAATGGAAGATATATTTATGTCTCA
CGCAACGAACTTCCTCGTGACCCTCCAAATGTCCTACGGAGGGATTCCAA
CGTTCCACCACGGTTCGACACGAGCGTTTTGAAAAAGTTCGAAGCCGCGA
ACGAGGAAAGACATCAATCGTGTCCTATATGTCTCGAGCAATTGCATGAG
GAACCGGTGAGTGCTGGACAGTGTTTGCATCTTATGCATAACAGCTGTCT
CGTTAGTTGGTTGAACAAGGATGCAAACTCGAACTGTCCAGTTTGTCGAG
TTCGCATTATGGAAAGCGCATCTTTTGATGGATTAGGGGCGAAGGTGACC
GAATTGGTTTCCGTAGTACAGCCTGTGAGCGAAACAATGGAACGGTTAAA
TGCTGAAAGTGGGCCTCACAGAGAAGACGACGTAAGATTGCTACTGGCCG
ACAATAGTTTGGGTGCACAAGCCGAGACGGAATCGGCATCACAACGGATA
CGAAATGAATCGATAGAAAATGACAACGAGAACAGCGCGGAACATGACTA
TTCTCAAAATGCGAACCAAAGATGGGAAGCGAGGAATGATGAAGTTACCC
ATCAATCTAGACCACATGACTCCGACGCTGGCGTGCTGTCGGCGCAAGAG
GTAATGGGTTCAACAATCGGAGGAGCATCAGGAGCGGTGACCCGAGCGGG
TAGTGATCGAGAAGTGGCAGTAGCAAACAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3988584..3989567-

>Gvermi12256.t1 ID=Gvermi12256.t1|Name=Gvermi12256.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:3988584..3989567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGTGTTGCCTGCCACGCAATATGCATTTCGTCAAGCCACTCAGGA
GCTCAACACTGTCGCGTTTCCATCGGCAATCCGCACGCTGGCTTCGGTTG
TTGCTTCCATAACGATGATTGTCACCATTTACCTCGGTTACCGAAAATGC
ATGAGGGGTCGAGATGATAGTTTCACCGCTGGCCGACAACAGCAGCAATC
ACTTGGCATTCCTCTTGCGTCTTACGATGCACCTGGAAGGACGTTATCAG
ACGAGTATTTGCCTGTTTACGTCGGGAATGGAAGATATATTTATGTCTCA
CGCAACGAACTTCCTCGTGACCCTCCAAATGTCCTACGGAGGGATTCCAA
CGTTCCACCACGGTTCGACACGAGCGTTTTGAAAAAGTTCGAAGCCGCGA
ACGAGGAAAGACATCAATCGTGTCCTATATGTCTCGAGCAATTGCATGAG
GAACCGGTGAGTGCTGGACAGTGTTTGCATCTTATGCATAACAGCTGTCT
CGTTAGTTGGTTGAACAAGGATGCAAACTCGAACTGTCCAGTTTGTCGAG
TTCGCATTATGGAAAGCGCATCTTTTGATGGATTAGGGGCGAAGGTGACC
GAATTGGTTTCCGTAGTACAGCCTGTGAGCGAAACAATGGAACGGTTAAA
TGCTGAAAGTGGGCCTCACAGAGAAGACGACGTAAGATTGCTACTGGCCG
ACAATAGTTTGGGTGCACAAGCCGAGACGGAATCGGCATCACAACGGATA
CGAAATGAATCGATAGAAAATGACAACGAGAACAGCGCGGAACATGACTA
TTCTCAAAATGCGAACCAAAGATGGGAAGCGAGGAATGATGAAGTTACCC
ATCAATCTAGACCACATGACTCCGACGCTGGCGTGCTGTCGGCGCAAGAG
GTAATGGGTTCAACAATCGGAGGAGCATCAGGAGCGGTGACCCGAGCGGG
TAGTGATCGAGAAGTGGCAGTAGCAAACAATTAA
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