Gvermi12254.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12254.t1
Unique NameGvermi12254.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3982751..3983494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708712.1
PFAMsGST_C,GST_C_2,GST_N_3
Max annot lvl2759|Eukaryota
Evalue9.21e-44
EggNOG OGsKOG0406@1|root,KOG0406@2759|Eukaryota
Descriptionglutathione transferase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12254Gvermi12254Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3982751..3983494 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12254.t1.start1Gvermi12254.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3982751..3982753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12254.t1.CDS1Gvermi12254.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3982751..3983494 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12254.t1.exon1Gvermi12254.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3982751..3983494 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12254.t1.stop1Gvermi12254.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3983492..3983494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12254.t1Gvermi12254.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3982751..3983494 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12254.t1 ID=Gvermi12254.t1|Name=Gvermi12254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=248bp
MAPPKVQITLYGSAVSNYTARCRYLIKRKNLPDDVVSLCSPKELGGMKTE
SYLKLNPLGKMPLLVVSKPGHEDDALFESSIICEYLSEEFADLQPSFRPD
APEARAKARLIANLLDIYVGPHHPYMYKKLDGDRMAGAQKMVQGFDAIEH
VLDPTGPYATGKDLSIADCCLLGNFPFYDYMLPTFFGWKPTDGRPRLKAW
REHMINESPAARETYSEVFNALQVWWDNDRWVNLGMKPLTPRPSLPF*
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spliced messenger RNA

>Gvermi12254.t1 ID=Gvermi12254.t1|Name=Gvermi12254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:3982751..3983494+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCCGAAGGTTCAGATAACTTTGTACGGATCCGCAGTATCGAA
TTATACCGCTCGTTGCAGGTATCTTATCAAAAGGAAAAATCTCCCGGATG
ACGTCGTATCGCTGTGTTCTCCAAAGGAACTAGGTGGTATGAAGACCGAA
TCTTATCTCAAACTGAATCCTCTCGGGAAAATGCCGTTGCTTGTCGTCAG
CAAACCAGGTCATGAGGATGACGCTCTGTTCGAAAGTTCCATCATATGCG
AATACCTTTCCGAAGAATTTGCAGATCTGCAACCAAGCTTCAGACCAGAT
GCTCCAGAAGCCCGTGCAAAAGCAAGGCTCATTGCAAACTTGTTAGATAT
TTACGTTGGTCCACATCATCCATACATGTACAAAAAGCTGGATGGAGATC
GCATGGCAGGCGCGCAGAAGATGGTTCAAGGATTCGACGCCATCGAACAC
GTCCTTGACCCCACTGGTCCGTACGCTACGGGGAAAGACCTTTCAATCGC
AGATTGCTGTCTATTGGGGAATTTCCCGTTTTACGATTACATGCTTCCGA
CTTTCTTCGGATGGAAACCCACTGACGGCCGGCCGCGACTGAAAGCCTGG
CGGGAACATATGATCAATGAATCCCCAGCTGCTAGGGAAACTTATTCCGA
AGTTTTCAATGCTCTCCAAGTTTGGTGGGACAACGACCGCTGGGTGAATC
TTGGTATGAAACCACTTACCCCGCGCCCTAGTCTTCCTTTTTGA
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protein sequence of Gvermi12254.t1

>Gvermi12254.t1 ID=Gvermi12254.t1|Name=Gvermi12254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MAPPKVQITLYGSAVSNYTARCRYLIKRKNLPDDVVSLCSPKELGGMKTE
SYLKLNPLGKMPLLVVSKPGHEDDALFESSIICEYLSEEFADLQPSFRPD
APEARAKARLIANLLDIYVGPHHPYMYKKLDGDRMAGAQKMVQGFDAIEH
VLDPTGPYATGKDLSIADCCLLGNFPFYDYMLPTFFGWKPTDGRPRLKAW
REHMINESPAARETYSEVFNALQVWWDNDRWVNLGMKPLTPRPSLPF*
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mRNA from alignment at ScGOVlb_3404:3982751..3983494+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12254.t1 ID=Gvermi12254.t1|Name=Gvermi12254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:3982751..3983494+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCTCCGAAGGTTCAGATAACTTTGTACGGATCCGCAGTATCGAA
TTATACCGCTCGTTGCAGGTATCTTATCAAAAGGAAAAATCTCCCGGATG
ACGTCGTATCGCTGTGTTCTCCAAAGGAACTAGGTGGTATGAAGACCGAA
TCTTATCTCAAACTGAATCCTCTCGGGAAAATGCCGTTGCTTGTCGTCAG
CAAACCAGGTCATGAGGATGACGCTCTGTTCGAAAGTTCCATCATATGCG
AATACCTTTCCGAAGAATTTGCAGATCTGCAACCAAGCTTCAGACCAGAT
GCTCCAGAAGCCCGTGCAAAAGCAAGGCTCATTGCAAACTTGTTAGATAT
TTACGTTGGTCCACATCATCCATACATGTACAAAAAGCTGGATGGAGATC
GCATGGCAGGCGCGCAGAAGATGGTTCAAGGATTCGACGCCATCGAACAC
GTCCTTGACCCCACTGGTCCGTACGCTACGGGGAAAGACCTTTCAATCGC
AGATTGCTGTCTATTGGGGAATTTCCCGTTTTACGATTACATGCTTCCGA
CTTTCTTCGGATGGAAACCCACTGACGGCCGGCCGCGACTGAAAGCCTGG
CGGGAACATATGATCAATGAATCCCCAGCTGCTAGGGAAACTTATTCCGA
AGTTTTCAATGCTCTCCAAGTTTGGTGGGACAACGACCGCTGGGTGAATC
TTGGTATGAAACCACTTACCCCGCGCCCTAGTCTTCCTTTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3982751..3983494+

>Gvermi12254.t1 ID=Gvermi12254.t1|Name=Gvermi12254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:3982751..3983494+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCTCCGAAGGTTCAGATAACTTTGTACGGATCCGCAGTATCGAA
TTATACCGCTCGTTGCAGGTATCTTATCAAAAGGAAAAATCTCCCGGATG
ACGTCGTATCGCTGTGTTCTCCAAAGGAACTAGGTGGTATGAAGACCGAA
TCTTATCTCAAACTGAATCCTCTCGGGAAAATGCCGTTGCTTGTCGTCAG
CAAACCAGGTCATGAGGATGACGCTCTGTTCGAAAGTTCCATCATATGCG
AATACCTTTCCGAAGAATTTGCAGATCTGCAACCAAGCTTCAGACCAGAT
GCTCCAGAAGCCCGTGCAAAAGCAAGGCTCATTGCAAACTTGTTAGATAT
TTACGTTGGTCCACATCATCCATACATGTACAAAAAGCTGGATGGAGATC
GCATGGCAGGCGCGCAGAAGATGGTTCAAGGATTCGACGCCATCGAACAC
GTCCTTGACCCCACTGGTCCGTACGCTACGGGGAAAGACCTTTCAATCGC
AGATTGCTGTCTATTGGGGAATTTCCCGTTTTACGATTACATGCTTCCGA
CTTTCTTCGGATGGAAACCCACTGACGGCCGGCCGCGACTGAAAGCCTGG
CGGGAACATATGATCAATGAATCCCCAGCTGCTAGGGAAACTTATTCCGA
AGTTTTCAATGCTCTCCAAGTTTGGTGGGACAACGACCGCTGGGTGAATC
TTGGTATGAAACCACTTACCCCGCGCCCTAGTCTTCCTTTTTGA
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