Gvermi12253.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12253.t1
Unique NameGvermi12253.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3980619..3981839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702812.1
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue3.66e-178
EggNOG OGsCOG0673@1|root,2RTD3@2759|Eukaryota
EC1.1.1.18,1.1.1.369
DescriptionOxidoreductase family, NAD-binding Rossmann fold
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12253Gvermi12253Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3980619..3981839 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12253.t1.start1Gvermi12253.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3980619..3980621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12253.t1.CDS1Gvermi12253.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3980619..3981839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12253.t1.exon1Gvermi12253.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3980619..3981839 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12253.t1.stop1Gvermi12253.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3981837..3981839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12253.t1Gvermi12253.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3980619..3981839 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12253.t1 ID=Gvermi12253.t1|Name=Gvermi12253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=407bp
MTAFVPSSLASQWVRPPTAHPKSSHTSFRARPLRPAAVSMSIPVPKESLK
AITPTEDEPRLNIGIIGAGRIGQVHADNITFRLRNANLVGVSSGSKVLAE
RCSLAHGCQPYYDYHELIENPDVHAVCICSASNQHTTQIIAAARAGKHIF
CEKPIDTSLDVIDKALVEVRKAGVKLQVGFNRRFDQNYRRVRKAIENNEI
GEPQIMHIVSRDPSPPPIEYVKNSGGIWMDCSIHDMDMARFLIGSEVDDV
YTLGAVNINPEIAEYGDVDTSIVTLRFKNGVIGTIDNSRQAVYGYDQRCE
VLGSGGSIYINNNYKNSAVISNNAAVMRDLPLNFFMDRYTDSFIVELNEF
CDAVLHDKPVPCTGLDGRAPVVIALAAKKSYQERRPVKISEVDQPLPSEL
KGWDGQ*
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spliced messenger RNA

>Gvermi12253.t1 ID=Gvermi12253.t1|Name=Gvermi12253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3980619..3981839+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCATTCGTCCCGTCCTCCCTCGCTTCGCAATGGGTTCGTCCGCC
TACTGCCCACCCAAAGTCCTCTCATACCTCTTTCCGTGCGCGCCCGCTGC
GCCCTGCGGCTGTCTCCATGTCAATCCCCGTTCCGAAGGAGTCATTGAAG
GCAATTACCCCCACCGAAGATGAACCCCGTCTGAACATTGGAATTATTGG
CGCGGGACGCATTGGACAGGTGCACGCCGACAACATCACATTCCGCCTCC
GCAACGCCAACTTGGTCGGTGTTTCTTCCGGCTCTAAGGTGCTCGCAGAG
CGCTGCTCTCTCGCGCACGGATGTCAGCCATATTACGACTATCACGAGCT
CATCGAAAACCCTGACGTACATGCTGTCTGTATCTGTTCCGCATCTAATC
AACACACCACCCAAATCATTGCCGCCGCCCGCGCTGGTAAGCATATCTTC
TGCGAGAAGCCCATAGATACTTCGTTGGACGTTATTGACAAGGCGCTTGT
CGAGGTGCGAAAGGCTGGTGTCAAGCTTCAAGTGGGCTTTAATCGCCGCT
TCGACCAGAACTATCGCCGTGTTCGGAAAGCGATCGAGAATAATGAAATC
GGGGAGCCACAAATCATGCACATCGTTAGCAGAGATCCTTCCCCTCCTCC
TATTGAGTATGTCAAGAATTCTGGGGGTATCTGGATGGATTGCAGTATCC
ATGACATGGACATGGCGCGCTTCCTCATCGGCTCTGAAGTTGATGATGTG
TATACACTTGGCGCCGTTAACATCAACCCTGAAATCGCTGAGTACGGCGA
CGTTGATACCAGTATTGTAACTCTTCGCTTTAAGAACGGCGTTATTGGTA
CCATCGACAACTCCCGTCAGGCTGTCTACGGCTATGATCAGCGATGCGAA
GTGCTTGGATCAGGTGGATCCATCTACATCAACAACAACTACAAAAACTC
TGCTGTCATTTCCAATAACGCAGCTGTGATGCGAGATTTGCCCCTCAACT
TCTTCATGGATCGCTACACTGATTCATTCATTGTCGAACTCAATGAATTC
TGCGATGCCGTGCTTCACGACAAGCCTGTTCCTTGCACCGGCCTAGACGG
ACGCGCACCTGTGGTAATTGCGCTGGCTGCTAAAAAATCATACCAGGAGA
GACGACCGGTTAAAATTTCCGAGGTTGACCAACCGCTCCCCTCAGAACTG
AAAGGTTGGGACGGTCAGTAG
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protein sequence of Gvermi12253.t1

>Gvermi12253.t1 ID=Gvermi12253.t1|Name=Gvermi12253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MTAFVPSSLASQWVRPPTAHPKSSHTSFRARPLRPAAVSMSIPVPKESLK
AITPTEDEPRLNIGIIGAGRIGQVHADNITFRLRNANLVGVSSGSKVLAE
RCSLAHGCQPYYDYHELIENPDVHAVCICSASNQHTTQIIAAARAGKHIF
CEKPIDTSLDVIDKALVEVRKAGVKLQVGFNRRFDQNYRRVRKAIENNEI
GEPQIMHIVSRDPSPPPIEYVKNSGGIWMDCSIHDMDMARFLIGSEVDDV
YTLGAVNINPEIAEYGDVDTSIVTLRFKNGVIGTIDNSRQAVYGYDQRCE
VLGSGGSIYINNNYKNSAVISNNAAVMRDLPLNFFMDRYTDSFIVELNEF
CDAVLHDKPVPCTGLDGRAPVVIALAAKKSYQERRPVKISEVDQPLPSEL
KGWDGQ*
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mRNA from alignment at ScGOVlb_3404:3980619..3981839+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12253.t1 ID=Gvermi12253.t1|Name=Gvermi12253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3980619..3981839+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCATTCGTCCCGTCCTCCCTCGCTTCGCAATGGGTTCGTCCGCC
TACTGCCCACCCAAAGTCCTCTCATACCTCTTTCCGTGCGCGCCCGCTGC
GCCCTGCGGCTGTCTCCATGTCAATCCCCGTTCCGAAGGAGTCATTGAAG
GCAATTACCCCCACCGAAGATGAACCCCGTCTGAACATTGGAATTATTGG
CGCGGGACGCATTGGACAGGTGCACGCCGACAACATCACATTCCGCCTCC
GCAACGCCAACTTGGTCGGTGTTTCTTCCGGCTCTAAGGTGCTCGCAGAG
CGCTGCTCTCTCGCGCACGGATGTCAGCCATATTACGACTATCACGAGCT
CATCGAAAACCCTGACGTACATGCTGTCTGTATCTGTTCCGCATCTAATC
AACACACCACCCAAATCATTGCCGCCGCCCGCGCTGGTAAGCATATCTTC
TGCGAGAAGCCCATAGATACTTCGTTGGACGTTATTGACAAGGCGCTTGT
CGAGGTGCGAAAGGCTGGTGTCAAGCTTCAAGTGGGCTTTAATCGCCGCT
TCGACCAGAACTATCGCCGTGTTCGGAAAGCGATCGAGAATAATGAAATC
GGGGAGCCACAAATCATGCACATCGTTAGCAGAGATCCTTCCCCTCCTCC
TATTGAGTATGTCAAGAATTCTGGGGGTATCTGGATGGATTGCAGTATCC
ATGACATGGACATGGCGCGCTTCCTCATCGGCTCTGAAGTTGATGATGTG
TATACACTTGGCGCCGTTAACATCAACCCTGAAATCGCTGAGTACGGCGA
CGTTGATACCAGTATTGTAACTCTTCGCTTTAAGAACGGCGTTATTGGTA
CCATCGACAACTCCCGTCAGGCTGTCTACGGCTATGATCAGCGATGCGAA
GTGCTTGGATCAGGTGGATCCATCTACATCAACAACAACTACAAAAACTC
TGCTGTCATTTCCAATAACGCAGCTGTGATGCGAGATTTGCCCCTCAACT
TCTTCATGGATCGCTACACTGATTCATTCATTGTCGAACTCAATGAATTC
TGCGATGCCGTGCTTCACGACAAGCCTGTTCCTTGCACCGGCCTAGACGG
ACGCGCACCTGTGGTAATTGCGCTGGCTGCTAAAAAATCATACCAGGAGA
GACGACCGGTTAAAATTTCCGAGGTTGACCAACCGCTCCCCTCAGAACTG
AAAGGTTGGGACGGTCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3980619..3981839+

>Gvermi12253.t1 ID=Gvermi12253.t1|Name=Gvermi12253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3980619..3981839+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCATTCGTCCCGTCCTCCCTCGCTTCGCAATGGGTTCGTCCGCC
TACTGCCCACCCAAAGTCCTCTCATACCTCTTTCCGTGCGCGCCCGCTGC
GCCCTGCGGCTGTCTCCATGTCAATCCCCGTTCCGAAGGAGTCATTGAAG
GCAATTACCCCCACCGAAGATGAACCCCGTCTGAACATTGGAATTATTGG
CGCGGGACGCATTGGACAGGTGCACGCCGACAACATCACATTCCGCCTCC
GCAACGCCAACTTGGTCGGTGTTTCTTCCGGCTCTAAGGTGCTCGCAGAG
CGCTGCTCTCTCGCGCACGGATGTCAGCCATATTACGACTATCACGAGCT
CATCGAAAACCCTGACGTACATGCTGTCTGTATCTGTTCCGCATCTAATC
AACACACCACCCAAATCATTGCCGCCGCCCGCGCTGGTAAGCATATCTTC
TGCGAGAAGCCCATAGATACTTCGTTGGACGTTATTGACAAGGCGCTTGT
CGAGGTGCGAAAGGCTGGTGTCAAGCTTCAAGTGGGCTTTAATCGCCGCT
TCGACCAGAACTATCGCCGTGTTCGGAAAGCGATCGAGAATAATGAAATC
GGGGAGCCACAAATCATGCACATCGTTAGCAGAGATCCTTCCCCTCCTCC
TATTGAGTATGTCAAGAATTCTGGGGGTATCTGGATGGATTGCAGTATCC
ATGACATGGACATGGCGCGCTTCCTCATCGGCTCTGAAGTTGATGATGTG
TATACACTTGGCGCCGTTAACATCAACCCTGAAATCGCTGAGTACGGCGA
CGTTGATACCAGTATTGTAACTCTTCGCTTTAAGAACGGCGTTATTGGTA
CCATCGACAACTCCCGTCAGGCTGTCTACGGCTATGATCAGCGATGCGAA
GTGCTTGGATCAGGTGGATCCATCTACATCAACAACAACTACAAAAACTC
TGCTGTCATTTCCAATAACGCAGCTGTGATGCGAGATTTGCCCCTCAACT
TCTTCATGGATCGCTACACTGATTCATTCATTGTCGAACTCAATGAATTC
TGCGATGCCGTGCTTCACGACAAGCCTGTTCCTTGCACCGGCCTAGACGG
ACGCGCACCTGTGGTAATTGCGCTGGCTGCTAAAAAATCATACCAGGAGA
GACGACCGGTTAAAATTTCCGAGGTTGACCAACCGCTCCCCTCAGAACTG
AAAGGTTGGGACGGTCAGTAG
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