Gvermi12252.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12252.t1
Unique NameGvermi12252.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3979153..3979821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264402.Cagra.2117s0049.1.p
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0016020,GO:0019216,GO:0019222,GO:0019747,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045828,GO:0045834,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0065007,GO:0065008,GO:0080090,GO:1904143
Evalue1.71e-08
EggNOG OGs28NS1@1|root,2QSP0@2759|Eukaryota,37HRX@33090|Viridiplantae,3GEYX@35493|Streptophyta,3HR9F@3699|Brassicales
Descriptionchaperone protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12252Gvermi12252Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3979153..3979821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12252.t1Gvermi12252.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3979153..3979821 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12252.t1.stop1Gvermi12252.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3979153..3979155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12252.t1.CDS1Gvermi12252.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3979153..3979272 -
Gvermi12252.t1.CDS2Gvermi12252.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3979387..3979821 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12252.t1.exon1Gvermi12252.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3979153..3979272 -
Gvermi12252.t1.exon2Gvermi12252.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3979387..3979821 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12252.t1.intron1Gvermi12252.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3979273..3979386 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12252.t1.start1Gvermi12252.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3979819..3979821 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12252.t1 ID=Gvermi12252.t1|Name=Gvermi12252.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=185bp
MSVPSFVSPTHTSWLTRRKSPEHHHSCPRRHTRTTATPSLVFDPNSVGTG
YALLNSLKGVVIGPTVNEITAAFAGGTVGVMGTIITLEVRRHKVKERKQC
PYCRGSGKLPCATCYTLGSLPSAAAAASQKSCSTCNEKGFLLCNHCDGDG
RLIPWAYERAIRAQYEDYVYTAIDDYFQDGPPYV*
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spliced messenger RNA

>Gvermi12252.t1 ID=Gvermi12252.t1|Name=Gvermi12252.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=555bp|location=Sequence derived from alignment at ScGOVlb_3404:3979153..3979821- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTTCCATCCTTTGTGTCTCCCACTCACACAAGTTGGTTGACAAG
GCGAAAGAGCCCCGAGCATCACCATAGTTGCCCGCGTCGGCACACTCGCA
CCACGGCCACACCTTCACTTGTGTTCGATCCAAACTCAGTTGGAACAGGT
TATGCGCTATTGAACAGTCTCAAAGGAGTCGTTATCGGACCCACAGTCAA
TGAGATTACCGCTGCTTTCGCAGGTGGCACCGTCGGCGTAATGGGCACAA
TCATCACACTGGAAGTCAGACGCCATAAAGTTAAAGAACGAAAGCAGTGT
CCGTACTGCAGAGGAAGCGGAAAGCTACCTTGCGCCACTTGTTACACCCT
TGGCTCTCTGCCTTCCGCTGCTGCCGCGGCATCACAGAAGAGTTGTTCAA
CATGCAATGAAAAGGGATTTCTTCTATGCAATCACTGCGACGGTGATGGT
CGTCTGATTCCATGGGCGTATGAGCGCGCCATTCGAGCCCAATACGAAGA
CTACGTATACACAGCGATTGACGACTACTTTCAGGACGGTCCTCCGTACG
TCTGA
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protein sequence of Gvermi12252.t1

>Gvermi12252.t1 ID=Gvermi12252.t1|Name=Gvermi12252.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=185bp
MSVPSFVSPTHTSWLTRRKSPEHHHSCPRRHTRTTATPSLVFDPNSVGTG
YALLNSLKGVVIGPTVNEITAAFAGGTVGVMGTIITLEVRRHKVKERKQC
PYCRGSGKLPCATCYTLGSLPSAAAAASQKSCSTCNEKGFLLCNHCDGDG
RLIPWAYERAIRAQYEDYVYTAIDDYFQDGPPYV*
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mRNA from alignment at ScGOVlb_3404:3979153..3979821-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12252.t1 ID=Gvermi12252.t1|Name=Gvermi12252.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=669bp|location=Sequence derived from alignment at ScGOVlb_3404:3979153..3979821- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTTCCATCCTTTGTGTCTCCCACTCACACAAGTTGGTTGACAAG
GCGAAAGAGCCCCGAGCATCACCATAGTTGCCCGCGTCGGCACACTCGCA
CCACGGCCACACCTTCACTTGTGTTCGATCCAAACTCAGTTGGAACAGGT
TATGCGCTATTGAACAGTCTCAAAGGAGTCGTTATCGGACCCACAGTCAA
TGAGATTACCGCTGCTTTCGCAGGTGGCACCGTCGGCGTAATGGGCACAA
TCATCACACTGGAAGTCAGACGCCATAAAGTTAAAGAACGAAAGCAGTGT
CCGTACTGCAGAGGAAGCGGAAAGCTACCTTGCGCCACTTGTTACACCCT
TGGCTCTCTGCCTTCCGCTGCTGCCGCGGCATCACAGAAGAGTTGTTCAA
CATGCAATGAAAAGGGATTTCTTCTATGCAATCACGTAAGTTTACATTAC
TTCATGGCACTTGCCTTCATTAGATCTTTTTTGTTGTTGAAAGCTTGTGC
TTCTCGCAGTTTGATGGCTTGTCATACTAACGTATTTTGCCTGCTGTAGT
GCGACGGTGATGGTCGTCTGATTCCATGGGCGTATGAGCGCGCCATTCGA
GCCCAATACGAAGACTACGTATACACAGCGATTGACGACTACTTTCAGGA
CGGTCCTCCGTACGTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3979153..3979821-

>Gvermi12252.t1 ID=Gvermi12252.t1|Name=Gvermi12252.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=555bp|location=Sequence derived from alignment at ScGOVlb_3404:3979153..3979821- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGTTCCATCCTTTGTGTCTCCCACTCACACAAGTTGGTTGACAAG
GCGAAAGAGCCCCGAGCATCACCATAGTTGCCCGCGTCGGCACACTCGCA
CCACGGCCACACCTTCACTTGTGTTCGATCCAAACTCAGTTGGAACAGGT
TATGCGCTATTGAACAGTCTCAAAGGAGTCGTTATCGGACCCACAGTCAA
TGAGATTACCGCTGCTTTCGCAGGTGGCACCGTCGGCGTAATGGGCACAA
TCATCACACTGGAAGTCAGACGCCATAAAGTTAAAGAACGAAAGCAGTGT
CCGTACTGCAGAGGAAGCGGAAAGCTACCTTGCGCCACTTGTTACACCCT
TGGCTCTCTGCCTTCCGCTGCTGCCGCGGCATCACAGAAGAGTTGTTCAA
CATGCAATGAAAAGGGATTTCTTCTATGCAATCACTGCGACGGTGATGGT
CGTCTGATTCCATGGGCGTATGAGCGCGCCATTCGAGCCCAATACGAAGA
CTACGTATACACAGCGATTGACGACTACTTTCAGGACGGTCCTCCGTACG
TCTGA
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