Gvermi12246.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12246.t1
Unique Name	Gvermi12246.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3967242..3969185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT489CT
PFAMs	Radical_SAM,Rotamase_3,TRAM,UPF0004
Max annot lvl	2759\|Eukaryota
Evalue	3.08e-178
EggNOG OGs	COG0621@1\|root,KOG2492@2759\|Eukaryota
Description	N6-isopentenyladenosine methylthiotransferase activity
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12246	Gvermi12246	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3967242..3969185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12246.t1.start1	Gvermi12246.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3967242..3967244 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12246.t1.CDS1	Gvermi12246.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3967242..3969185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12246.t1.exon1	Gvermi12246.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3967242..3969185 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12246.t1.stop1	Gvermi12246.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3969183..3969185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12246.t1	Gvermi12246.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3967242..3969185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3967242..3969185+
coding sequence from alignment at ScGOVlb_3404:3967242..3969185+

mRNA sequence

>Gvermi12246.t1 ID=Gvermi12246.t1|Name=Gvermi12246.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=648bp
MLDKLAFTSAGFYGSSDNWQSSKLPRARQLCHQRVRTTTTAVLQQQNLQS
RKLFAPGEPGHRFHNFSPEDIEAIRIRHCRLESEELCDHVWKEVTRGKAS
LDDMATSLSTCSASRETGGDLGWWWRDEVVPENIDEFGINDQLLAAALRS
RPNRVERVETKNGWHVFVVEEVRHVLRTKHERTPSRNNPNRKKETNRDDE
VPVPMPLTYAIQTLGCQMNRSDSERMAGELCRLGYVETSDPFQASLLVLN
TCNIREHAESKVYSYLGRHVIRKRKYPTDVTLCVAGCVAQQEGERMLRRI
PELDLVFGPQYANRIGDLLSDVERNRCQIAATDPIHVQEDISKPKRESTV
TAWINVMHGCGENCTFCTVGNVVRSVEQSRTMAAIRAEITGAAKDGIREV
VLLGQNIDAYGRDMYPKKTFSELLTYIHDVEGIERIRFTTSHPRYISSNL
VNVCANLPKIMPYFHIPPQSGDNAILKAMRRGYTVETYETIVNRIRERIP
DAGICGDMIVGFPGETEDQFQRSLDLMTRIKFDGMNTAAYSPRPQTPAAT
MDNQIPDAVKVDRLHRMNSLVKAHALERSRRYVGRTEYVLVEEENPKDAS
QVIGRNPANRRVYFEGSIEDLKGKIVPIKIEHAYPFSLKGRKVGPAY*

spliced messenger RNA

>Gvermi12246.t1 ID=Gvermi12246.t1|Name=Gvermi12246.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at ScGOVlb_3404:3967242..3969185+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGATAAGTTGGCATTCACGTCAGCAGGCTTTTATGGCTCTTCAGA
CAACTGGCAGTCCTCCAAGCTACCACGAGCACGGCAGTTATGCCATCAGC
GTGTGAGAACAACCACTACTGCTGTTCTGCAGCAACAAAATCTGCAATCC
AGAAAGCTCTTTGCGCCGGGAGAACCTGGTCATAGGTTCCACAATTTCTC
ACCGGAAGATATTGAAGCGATTCGTATTCGCCATTGTCGTCTTGAGAGTG
AGGAGCTTTGTGACCATGTCTGGAAAGAGGTTACTCGTGGGAAAGCGAGT
TTGGATGATATGGCTACTTCTCTCTCCACCTGTTCTGCTAGTAGGGAAAC
TGGTGGTGATTTGGGTTGGTGGTGGAGGGATGAAGTTGTCCCTGAAAACA
TTGACGAATTCGGTATAAATGATCAGCTTCTCGCCGCTGCCTTACGGAGT
CGTCCGAACAGGGTAGAACGAGTTGAAACAAAGAACGGTTGGCATGTTTT
TGTCGTGGAAGAAGTTCGCCATGTTCTGCGAACAAAGCACGAGAGAACAC
CTTCAAGAAACAATCCAAATCGAAAGAAAGAAACAAATCGTGATGATGAG
GTTCCCGTTCCCATGCCACTCACCTATGCAATTCAGACTTTGGGTTGTCA
AATGAACCGGTCTGATTCGGAACGTATGGCGGGAGAACTATGTCGCCTTG
GATATGTTGAGACGAGTGACCCTTTCCAGGCATCATTGCTGGTTCTTAAT
ACGTGCAATATTCGGGAACACGCCGAGAGCAAAGTGTATAGCTATCTGGG
ACGGCATGTGATAAGGAAAAGAAAGTATCCAACTGATGTTACACTCTGCG
TCGCGGGATGTGTAGCTCAACAGGAAGGAGAGAGAATGCTTCGTCGAATT
CCAGAGCTCGATCTTGTTTTTGGTCCTCAGTATGCCAACAGAATAGGGGA
TTTGCTGTCCGATGTAGAAAGGAACAGATGTCAGATTGCAGCTACAGACC
CTATTCACGTCCAAGAAGATATTTCAAAACCTAAACGCGAGTCAACGGTA
ACCGCATGGATCAACGTGATGCACGGGTGTGGAGAGAATTGTACTTTCTG
TACCGTCGGAAACGTGGTTCGTTCAGTCGAACAGAGCCGAACGATGGCAG
CAATTAGAGCTGAAATCACAGGAGCCGCAAAGGACGGGATTCGAGAGGTC
GTATTGCTCGGTCAGAATATTGACGCATACGGTCGCGACATGTACCCGAA
AAAAACTTTCTCCGAGCTTTTAACTTATATTCATGATGTTGAAGGTATTG
AGAGAATCCGATTCACCACAAGTCATCCGCGCTATATATCTTCGAACCTC
GTGAATGTGTGTGCAAACTTGCCGAAGATCATGCCGTACTTTCATATCCC
TCCACAGAGTGGGGACAACGCAATTCTGAAGGCTATGAGAAGGGGCTACA
CGGTAGAAACATATGAAACTATTGTGAATCGTATACGTGAGCGTATTCCA
GATGCTGGGATTTGCGGGGATATGATTGTCGGGTTCCCGGGTGAGACAGA
AGACCAATTCCAGAGGTCTCTGGATCTCATGACCAGGATCAAATTTGATG
GAATGAATACTGCCGCTTACTCGCCGAGACCACAGACACCTGCTGCTACA
ATGGACAACCAAATCCCTGATGCAGTCAAGGTTGATAGACTGCATCGCAT
GAATAGTTTAGTCAAAGCACATGCGCTGGAGAGAAGCCGGAGATACGTTG
GAAGAACTGAATATGTACTCGTGGAAGAAGAAAACCCCAAAGACGCTAGC
CAGGTCATAGGAAGAAACCCTGCCAATCGTCGCGTTTATTTCGAAGGATC
TATTGAAGATTTGAAGGGAAAGATTGTTCCCATCAAGATTGAGCACGCGT
ACCCATTTAGTTTAAAAGGCCGAAAAGTAGGCCCTGCATATTAA

protein sequence of Gvermi12246.t1

>Gvermi12246.t1 ID=Gvermi12246.t1|Name=Gvermi12246.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=648bp
MLDKLAFTSAGFYGSSDNWQSSKLPRARQLCHQRVRTTTTAVLQQQNLQS
RKLFAPGEPGHRFHNFSPEDIEAIRIRHCRLESEELCDHVWKEVTRGKAS
LDDMATSLSTCSASRETGGDLGWWWRDEVVPENIDEFGINDQLLAAALRS
RPNRVERVETKNGWHVFVVEEVRHVLRTKHERTPSRNNPNRKKETNRDDE
VPVPMPLTYAIQTLGCQMNRSDSERMAGELCRLGYVETSDPFQASLLVLN
TCNIREHAESKVYSYLGRHVIRKRKYPTDVTLCVAGCVAQQEGERMLRRI
PELDLVFGPQYANRIGDLLSDVERNRCQIAATDPIHVQEDISKPKRESTV
TAWINVMHGCGENCTFCTVGNVVRSVEQSRTMAAIRAEITGAAKDGIREV
VLLGQNIDAYGRDMYPKKTFSELLTYIHDVEGIERIRFTTSHPRYISSNL
VNVCANLPKIMPYFHIPPQSGDNAILKAMRRGYTVETYETIVNRIRERIP
DAGICGDMIVGFPGETEDQFQRSLDLMTRIKFDGMNTAAYSPRPQTPAAT
MDNQIPDAVKVDRLHRMNSLVKAHALERSRRYVGRTEYVLVEEENPKDAS
QVIGRNPANRRVYFEGSIEDLKGKIVPIKIEHAYPFSLKGRKVGPAY*

mRNA from alignment at ScGOVlb_3404:3967242..3969185+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12246.t1 ID=Gvermi12246.t1|Name=Gvermi12246.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at ScGOVlb_3404:3967242..3969185+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGATAAGTTGGCATTCACGTCAGCAGGCTTTTATGGCTCTTCAGA
CAACTGGCAGTCCTCCAAGCTACCACGAGCACGGCAGTTATGCCATCAGC
GTGTGAGAACAACCACTACTGCTGTTCTGCAGCAACAAAATCTGCAATCC
AGAAAGCTCTTTGCGCCGGGAGAACCTGGTCATAGGTTCCACAATTTCTC
ACCGGAAGATATTGAAGCGATTCGTATTCGCCATTGTCGTCTTGAGAGTG
AGGAGCTTTGTGACCATGTCTGGAAAGAGGTTACTCGTGGGAAAGCGAGT
TTGGATGATATGGCTACTTCTCTCTCCACCTGTTCTGCTAGTAGGGAAAC
TGGTGGTGATTTGGGTTGGTGGTGGAGGGATGAAGTTGTCCCTGAAAACA
TTGACGAATTCGGTATAAATGATCAGCTTCTCGCCGCTGCCTTACGGAGT
CGTCCGAACAGGGTAGAACGAGTTGAAACAAAGAACGGTTGGCATGTTTT
TGTCGTGGAAGAAGTTCGCCATGTTCTGCGAACAAAGCACGAGAGAACAC
CTTCAAGAAACAATCCAAATCGAAAGAAAGAAACAAATCGTGATGATGAG
GTTCCCGTTCCCATGCCACTCACCTATGCAATTCAGACTTTGGGTTGTCA
AATGAACCGGTCTGATTCGGAACGTATGGCGGGAGAACTATGTCGCCTTG
GATATGTTGAGACGAGTGACCCTTTCCAGGCATCATTGCTGGTTCTTAAT
ACGTGCAATATTCGGGAACACGCCGAGAGCAAAGTGTATAGCTATCTGGG
ACGGCATGTGATAAGGAAAAGAAAGTATCCAACTGATGTTACACTCTGCG
TCGCGGGATGTGTAGCTCAACAGGAAGGAGAGAGAATGCTTCGTCGAATT
CCAGAGCTCGATCTTGTTTTTGGTCCTCAGTATGCCAACAGAATAGGGGA
TTTGCTGTCCGATGTAGAAAGGAACAGATGTCAGATTGCAGCTACAGACC
CTATTCACGTCCAAGAAGATATTTCAAAACCTAAACGCGAGTCAACGGTA
ACCGCATGGATCAACGTGATGCACGGGTGTGGAGAGAATTGTACTTTCTG
TACCGTCGGAAACGTGGTTCGTTCAGTCGAACAGAGCCGAACGATGGCAG
CAATTAGAGCTGAAATCACAGGAGCCGCAAAGGACGGGATTCGAGAGGTC
GTATTGCTCGGTCAGAATATTGACGCATACGGTCGCGACATGTACCCGAA
AAAAACTTTCTCCGAGCTTTTAACTTATATTCATGATGTTGAAGGTATTG
AGAGAATCCGATTCACCACAAGTCATCCGCGCTATATATCTTCGAACCTC
GTGAATGTGTGTGCAAACTTGCCGAAGATCATGCCGTACTTTCATATCCC
TCCACAGAGTGGGGACAACGCAATTCTGAAGGCTATGAGAAGGGGCTACA
CGGTAGAAACATATGAAACTATTGTGAATCGTATACGTGAGCGTATTCCA
GATGCTGGGATTTGCGGGGATATGATTGTCGGGTTCCCGGGTGAGACAGA
AGACCAATTCCAGAGGTCTCTGGATCTCATGACCAGGATCAAATTTGATG
GAATGAATACTGCCGCTTACTCGCCGAGACCACAGACACCTGCTGCTACA
ATGGACAACCAAATCCCTGATGCAGTCAAGGTTGATAGACTGCATCGCAT
GAATAGTTTAGTCAAAGCACATGCGCTGGAGAGAAGCCGGAGATACGTTG
GAAGAACTGAATATGTACTCGTGGAAGAAGAAAACCCCAAAGACGCTAGC
CAGGTCATAGGAAGAAACCCTGCCAATCGTCGCGTTTATTTCGAAGGATC
TATTGAAGATTTGAAGGGAAAGATTGTTCCCATCAAGATTGAGCACGCGT
ACCCATTTAGTTTAAAAGGCCGAAAAGTAGGCCCTGCATATTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3967242..3969185+

>Gvermi12246.t1 ID=Gvermi12246.t1|Name=Gvermi12246.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1944bp|location=Sequence derived from alignment at ScGOVlb_3404:3967242..3969185+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGATAAGTTGGCATTCACGTCAGCAGGCTTTTATGGCTCTTCAGA
CAACTGGCAGTCCTCCAAGCTACCACGAGCACGGCAGTTATGCCATCAGC
GTGTGAGAACAACCACTACTGCTGTTCTGCAGCAACAAAATCTGCAATCC
AGAAAGCTCTTTGCGCCGGGAGAACCTGGTCATAGGTTCCACAATTTCTC
ACCGGAAGATATTGAAGCGATTCGTATTCGCCATTGTCGTCTTGAGAGTG
AGGAGCTTTGTGACCATGTCTGGAAAGAGGTTACTCGTGGGAAAGCGAGT
TTGGATGATATGGCTACTTCTCTCTCCACCTGTTCTGCTAGTAGGGAAAC
TGGTGGTGATTTGGGTTGGTGGTGGAGGGATGAAGTTGTCCCTGAAAACA
TTGACGAATTCGGTATAAATGATCAGCTTCTCGCCGCTGCCTTACGGAGT
CGTCCGAACAGGGTAGAACGAGTTGAAACAAAGAACGGTTGGCATGTTTT
TGTCGTGGAAGAAGTTCGCCATGTTCTGCGAACAAAGCACGAGAGAACAC
CTTCAAGAAACAATCCAAATCGAAAGAAAGAAACAAATCGTGATGATGAG
GTTCCCGTTCCCATGCCACTCACCTATGCAATTCAGACTTTGGGTTGTCA
AATGAACCGGTCTGATTCGGAACGTATGGCGGGAGAACTATGTCGCCTTG
GATATGTTGAGACGAGTGACCCTTTCCAGGCATCATTGCTGGTTCTTAAT
ACGTGCAATATTCGGGAACACGCCGAGAGCAAAGTGTATAGCTATCTGGG
ACGGCATGTGATAAGGAAAAGAAAGTATCCAACTGATGTTACACTCTGCG
TCGCGGGATGTGTAGCTCAACAGGAAGGAGAGAGAATGCTTCGTCGAATT
CCAGAGCTCGATCTTGTTTTTGGTCCTCAGTATGCCAACAGAATAGGGGA
TTTGCTGTCCGATGTAGAAAGGAACAGATGTCAGATTGCAGCTACAGACC
CTATTCACGTCCAAGAAGATATTTCAAAACCTAAACGCGAGTCAACGGTA
ACCGCATGGATCAACGTGATGCACGGGTGTGGAGAGAATTGTACTTTCTG
TACCGTCGGAAACGTGGTTCGTTCAGTCGAACAGAGCCGAACGATGGCAG
CAATTAGAGCTGAAATCACAGGAGCCGCAAAGGACGGGATTCGAGAGGTC
GTATTGCTCGGTCAGAATATTGACGCATACGGTCGCGACATGTACCCGAA
AAAAACTTTCTCCGAGCTTTTAACTTATATTCATGATGTTGAAGGTATTG
AGAGAATCCGATTCACCACAAGTCATCCGCGCTATATATCTTCGAACCTC
GTGAATGTGTGTGCAAACTTGCCGAAGATCATGCCGTACTTTCATATCCC
TCCACAGAGTGGGGACAACGCAATTCTGAAGGCTATGAGAAGGGGCTACA
CGGTAGAAACATATGAAACTATTGTGAATCGTATACGTGAGCGTATTCCA
GATGCTGGGATTTGCGGGGATATGATTGTCGGGTTCCCGGGTGAGACAGA
AGACCAATTCCAGAGGTCTCTGGATCTCATGACCAGGATCAAATTTGATG
GAATGAATACTGCCGCTTACTCGCCGAGACCACAGACACCTGCTGCTACA
ATGGACAACCAAATCCCTGATGCAGTCAAGGTTGATAGACTGCATCGCAT
GAATAGTTTAGTCAAAGCACATGCGCTGGAGAGAAGCCGGAGATACGTTG
GAAGAACTGAATATGTACTCGTGGAAGAAGAAAACCCCAAAGACGCTAGC
CAGGTCATAGGAAGAAACCCTGCCAATCGTCGCGTTTATTTCGAAGGATC
TATTGAAGATTTGAAGGGAAAGATTGTTCCCATCAAGATTGAGCACGCGT
ACCCATTTAGTTTAAAAGGCCGAAAAGTAGGCCCTGCATATTAA