Gvermi12244.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12244.t1
Unique Name	Gvermi12244.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	522

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3960473..3962038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010688431.1
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14791
GOs	GO:0001932,GO:0001933,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0006325,GO:0006355,GO:0006356,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0012505,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0033135,GO:0033137,GO:0033139,GO:0033140,GO:0034770,GO:0034773,GO:0034968,GO:0035064,GO:0036211,GO:0042325,GO:0042326,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045936,GO:0045943,GO:0046425,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:0140034,GO:1901564,GO:1901836,GO:1901838,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:1904892,GO:1990889,GO:2000112,GO:2000736,GO:2000738,GO:2001141
Evalue	7.67e-52
EggNOG OGs	KOG0270@1\|root,KOG0270@2759\|Eukaryota,37HSM@33090\|Viridiplantae,3GET6@35493\|Streptophyta
Description	Periodic tryptophan protein 1 homolog
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12244	Gvermi12244	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3960473..3962038 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12244.t1.start1	Gvermi12244.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3960473..3960475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12244.t1.CDS1	Gvermi12244.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3960473..3962038 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12244.t1.exon1	Gvermi12244.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3960473..3962038 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12244.t1.stop1	Gvermi12244.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3962036..3962038 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12244.t1	Gvermi12244.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3960473..3962038 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3960473..3962038+
coding sequence from alignment at ScGOVlb_3404:3960473..3962038+

mRNA sequence

>Gvermi12244.t1 ID=Gvermi12244.t1|Name=Gvermi12244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp
MLVDLAWVPRGRASAKLPQGVDQDVDMEPSDAASKNAEIKESDDDSEVDM
DEVLANDLDNLSFYKKGEKDPYLSSGPKAGDVFDEDELEDMVIRSTDAIV
ISIHSGEDVSLLMTHVFDDNPDESDDDEDTPYKPHTYIHHDLVLPTLPLC
AAHTSLEVSAEMVNLVAVGMFTPGIEIWDVDLVNNLEPAVSLGGYGSNSA
VKEAFAAASKVQGARKKKKKKKPKLELREGSHKDAVMSLSWNSVQREYLA
SGSADHTVKVWDIESAHCASTFSHHCDKVQGVEFHPSEAELLLSGSFDKT
VQIIDVRDPGKRKKWAVSADVETCSWGHGPVKDLILSTTEDGYVTAFDTR
MSGDNSSFLCRWLAHENAVSATVVSKDVPGMMVTGSVDKQIKVWDISQLN
SNVGAEMIYEKSSKVGAVFALSLCPIPQAGTNASPFVLALGGSKGTLSVT
DLAVESEAVRERFLHHCGIEARNVIKRRSGRSIRIDGEPELNEVKTPKNV
LLGKKGGNGETSSSSSGSDVE*

spliced messenger RNA

>Gvermi12244.t1 ID=Gvermi12244.t1|Name=Gvermi12244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_3404:3960473..3962038+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTAGATTTGGCATGGGTTCCGCGAGGTCGAGCTTCTGCGAAACT
GCCGCAAGGTGTGGATCAAGATGTCGATATGGAACCTTCAGATGCCGCTT
CTAAGAATGCAGAGATCAAGGAGAGCGATGATGATTCAGAAGTAGACATG
GACGAGGTGCTGGCAAATGACCTAGACAATCTCTCGTTTTATAAAAAGGG
TGAAAAAGACCCTTATCTTTCGTCTGGTCCGAAAGCCGGTGATGTGTTCG
ACGAGGATGAACTCGAAGATATGGTGATTCGGTCAACAGATGCAATAGTA
ATTTCTATACATTCTGGAGAGGACGTTTCACTCTTGATGACACATGTATT
CGACGACAATCCAGACGAATCCGATGATGATGAGGATACGCCCTATAAAC
CACACACATACATTCACCATGACCTCGTGCTGCCTACCCTGCCGCTTTGT
GCGGCTCACACTAGTCTTGAAGTGAGTGCAGAAATGGTAAACCTTGTGGC
AGTTGGAATGTTCACCCCGGGAATAGAAATATGGGACGTTGATCTGGTCA
ATAATCTGGAGCCCGCTGTATCACTCGGGGGATATGGTTCAAATTCAGCC
GTGAAAGAAGCTTTTGCGGCAGCCAGTAAAGTGCAAGGAGCGCGgaagaa
gaagaaaaagaagaaACCGAAGCTTGAGCTTCGAGAAGGTTCGCATAAAG
ACGCAGTCATGAGTCTTTCATGGAATTCCGTGCAGAGAGAGTATCTTGCG
AGTGGCTCCGCGGATCATACTGTCAAAGTATGGGATATTGAATCTGCCCA
CTGCGCATCAACATTTTCACATCATTGTGATAAGGTGCAGGGGGTGGAGT
TTCATCCATCGGAGGCTGAGCTGCTCTTAAGTGGATCATTTGACAAGACT
GTTCAGATAATCGATGTTCGTGACCCAGGCAAAAGAAAAAAGTGGGCTGT
AAGTGCCGACGTTGAAACTTGTTCATGGGGTCATGGACCAGTCAAAGATT
TGATTCTTAGTACAACTGAAGATGGATACGTGACTGCGTTTGACACCAGA
ATGTCGGGAGATAATTCTTCATTTTTATGCAGATGGCTTGCGCATGAAAA
CGCAGTTTCCGCAACCGTCGTTTCGAAGGATGTCCCAGGTATGATGGTTA
CTGGCAGCGTCGACAAACAGATTAAGGTCTGGGACATATCACAGTTAAAT
TCGAATGTAGGGGCGGAAATGATTTATGAAAAGTCGTCGAAGGTGGGCGC
AGTTTTCGCACTTTCTCTCTGTCCCATCCCGCAGGCAGGAACAAACGCAT
CGCCTTTTGTACTAGCGTTGGGAGGCTCAAAAGGCACACTCAGCGTCACA
GATCTTGCCGTTGAGAGCGAAGCCGTGAGAGAGAGGTTTCTACATCATTG
TGGAATCGAAGCCAGGAACGTAATCAAGAGAAGAAGTGGTCGGAGTATCC
GTATTGATGGGGAACCCGAACTTAATGAAGTCAAAACTCCTAAAAATGTG
CTTCTCGGAAAGAAGGGCGGCAATGGTGAAACGTCATCAAGTAGCTCTGG
CTCTGACGTTGAATGA

protein sequence of Gvermi12244.t1

>Gvermi12244.t1 ID=Gvermi12244.t1|Name=Gvermi12244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=522bp
MLVDLAWVPRGRASAKLPQGVDQDVDMEPSDAASKNAEIKESDDDSEVDM
DEVLANDLDNLSFYKKGEKDPYLSSGPKAGDVFDEDELEDMVIRSTDAIV
ISIHSGEDVSLLMTHVFDDNPDESDDDEDTPYKPHTYIHHDLVLPTLPLC
AAHTSLEVSAEMVNLVAVGMFTPGIEIWDVDLVNNLEPAVSLGGYGSNSA
VKEAFAAASKVQGARKKKKKKKPKLELREGSHKDAVMSLSWNSVQREYLA
SGSADHTVKVWDIESAHCASTFSHHCDKVQGVEFHPSEAELLLSGSFDKT
VQIIDVRDPGKRKKWAVSADVETCSWGHGPVKDLILSTTEDGYVTAFDTR
MSGDNSSFLCRWLAHENAVSATVVSKDVPGMMVTGSVDKQIKVWDISQLN
SNVGAEMIYEKSSKVGAVFALSLCPIPQAGTNASPFVLALGGSKGTLSVT
DLAVESEAVRERFLHHCGIEARNVIKRRSGRSIRIDGEPELNEVKTPKNV
LLGKKGGNGETSSSSSGSDVE*

mRNA from alignment at ScGOVlb_3404:3960473..3962038+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12244.t1 ID=Gvermi12244.t1|Name=Gvermi12244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_3404:3960473..3962038+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGTAGATTTGGCATGGGTTCCGCGAGGTCGAGCTTCTGCGAAACT
GCCGCAAGGTGTGGATCAAGATGTCGATATGGAACCTTCAGATGCCGCTT
CTAAGAATGCAGAGATCAAGGAGAGCGATGATGATTCAGAAGTAGACATG
GACGAGGTGCTGGCAAATGACCTAGACAATCTCTCGTTTTATAAAAAGGG
TGAAAAAGACCCTTATCTTTCGTCTGGTCCGAAAGCCGGTGATGTGTTCG
ACGAGGATGAACTCGAAGATATGGTGATTCGGTCAACAGATGCAATAGTA
ATTTCTATACATTCTGGAGAGGACGTTTCACTCTTGATGACACATGTATT
CGACGACAATCCAGACGAATCCGATGATGATGAGGATACGCCCTATAAAC
CACACACATACATTCACCATGACCTCGTGCTGCCTACCCTGCCGCTTTGT
GCGGCTCACACTAGTCTTGAAGTGAGTGCAGAAATGGTAAACCTTGTGGC
AGTTGGAATGTTCACCCCGGGAATAGAAATATGGGACGTTGATCTGGTCA
ATAATCTGGAGCCCGCTGTATCACTCGGGGGATATGGTTCAAATTCAGCC
GTGAAAGAAGCTTTTGCGGCAGCCAGTAAAGTGCAAGGAGCGCGgaagaa
gaagaaaaagaagaaACCGAAGCTTGAGCTTCGAGAAGGTTCGCATAAAG
ACGCAGTCATGAGTCTTTCATGGAATTCCGTGCAGAGAGAGTATCTTGCG
AGTGGCTCCGCGGATCATACTGTCAAAGTATGGGATATTGAATCTGCCCA
CTGCGCATCAACATTTTCACATCATTGTGATAAGGTGCAGGGGGTGGAGT
TTCATCCATCGGAGGCTGAGCTGCTCTTAAGTGGATCATTTGACAAGACT
GTTCAGATAATCGATGTTCGTGACCCAGGCAAAAGAAAAAAGTGGGCTGT
AAGTGCCGACGTTGAAACTTGTTCATGGGGTCATGGACCAGTCAAAGATT
TGATTCTTAGTACAACTGAAGATGGATACGTGACTGCGTTTGACACCAGA
ATGTCGGGAGATAATTCTTCATTTTTATGCAGATGGCTTGCGCATGAAAA
CGCAGTTTCCGCAACCGTCGTTTCGAAGGATGTCCCAGGTATGATGGTTA
CTGGCAGCGTCGACAAACAGATTAAGGTCTGGGACATATCACAGTTAAAT
TCGAATGTAGGGGCGGAAATGATTTATGAAAAGTCGTCGAAGGTGGGCGC
AGTTTTCGCACTTTCTCTCTGTCCCATCCCGCAGGCAGGAACAAACGCAT
CGCCTTTTGTACTAGCGTTGGGAGGCTCAAAAGGCACACTCAGCGTCACA
GATCTTGCCGTTGAGAGCGAAGCCGTGAGAGAGAGGTTTCTACATCATTG
TGGAATCGAAGCCAGGAACGTAATCAAGAGAAGAAGTGGTCGGAGTATCC
GTATTGATGGGGAACCCGAACTTAATGAAGTCAAAACTCCTAAAAATGTG
CTTCTCGGAAAGAAGGGCGGCAATGGTGAAACGTCATCAAGTAGCTCTGG
CTCTGACGTTGAATGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3960473..3962038+

>Gvermi12244.t1 ID=Gvermi12244.t1|Name=Gvermi12244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1566bp|location=Sequence derived from alignment at ScGOVlb_3404:3960473..3962038+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGTAGATTTGGCATGGGTTCCGCGAGGTCGAGCTTCTGCGAAACT
GCCGCAAGGTGTGGATCAAGATGTCGATATGGAACCTTCAGATGCCGCTT
CTAAGAATGCAGAGATCAAGGAGAGCGATGATGATTCAGAAGTAGACATG
GACGAGGTGCTGGCAAATGACCTAGACAATCTCTCGTTTTATAAAAAGGG
TGAAAAAGACCCTTATCTTTCGTCTGGTCCGAAAGCCGGTGATGTGTTCG
ACGAGGATGAACTCGAAGATATGGTGATTCGGTCAACAGATGCAATAGTA
ATTTCTATACATTCTGGAGAGGACGTTTCACTCTTGATGACACATGTATT
CGACGACAATCCAGACGAATCCGATGATGATGAGGATACGCCCTATAAAC
CACACACATACATTCACCATGACCTCGTGCTGCCTACCCTGCCGCTTTGT
GCGGCTCACACTAGTCTTGAAGTGAGTGCAGAAATGGTAAACCTTGTGGC
AGTTGGAATGTTCACCCCGGGAATAGAAATATGGGACGTTGATCTGGTCA
ATAATCTGGAGCCCGCTGTATCACTCGGGGGATATGGTTCAAATTCAGCC
GTGAAAGAAGCTTTTGCGGCAGCCAGTAAAGTGCAAGGAGCGCGgaagaa
gaagaaaaagaagaaACCGAAGCTTGAGCTTCGAGAAGGTTCGCATAAAG
ACGCAGTCATGAGTCTTTCATGGAATTCCGTGCAGAGAGAGTATCTTGCG
AGTGGCTCCGCGGATCATACTGTCAAAGTATGGGATATTGAATCTGCCCA
CTGCGCATCAACATTTTCACATCATTGTGATAAGGTGCAGGGGGTGGAGT
TTCATCCATCGGAGGCTGAGCTGCTCTTAAGTGGATCATTTGACAAGACT
GTTCAGATAATCGATGTTCGTGACCCAGGCAAAAGAAAAAAGTGGGCTGT
AAGTGCCGACGTTGAAACTTGTTCATGGGGTCATGGACCAGTCAAAGATT
TGATTCTTAGTACAACTGAAGATGGATACGTGACTGCGTTTGACACCAGA
ATGTCGGGAGATAATTCTTCATTTTTATGCAGATGGCTTGCGCATGAAAA
CGCAGTTTCCGCAACCGTCGTTTCGAAGGATGTCCCAGGTATGATGGTTA
CTGGCAGCGTCGACAAACAGATTAAGGTCTGGGACATATCACAGTTAAAT
TCGAATGTAGGGGCGGAAATGATTTATGAAAAGTCGTCGAAGGTGGGCGC
AGTTTTCGCACTTTCTCTCTGTCCCATCCCGCAGGCAGGAACAAACGCAT
CGCCTTTTGTACTAGCGTTGGGAGGCTCAAAAGGCACACTCAGCGTCACA
GATCTTGCCGTTGAGAGCGAAGCCGTGAGAGAGAGGTTTCTACATCATTG
TGGAATCGAAGCCAGGAACGTAATCAAGAGAAGAAGTGGTCGGAGTATCC
GTATTGATGGGGAACCCGAACTTAATGAAGTCAAAACTCCTAAAAATGTG
CTTCTCGGAAAGAAGGGCGGCAATGGTGAAACGTCATCAAGTAGCTCTGG
CTCTGACGTTGAATGA