Gvermi12241.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12241.t1
Unique NameGvermi12241.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3957047..3957520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705453.1
Preferred nameLYRM1
PFAMsComplex1_LYR
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0030496,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Evalue9.34e-25
EggNOG OGs2BPRX@1|root,2S0XV@2759|Eukaryota
DescriptionComplex 1 protein (LYR family)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12241Gvermi12241Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3957047..3957520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12241.t1Gvermi12241.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3957047..3957520 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12241.t1.start1Gvermi12241.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3957047..3957049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12241.t1.CDS1Gvermi12241.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3957047..3957107 +
Gvermi12241.t1.CDS2Gvermi12241.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3957237..3957520 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12241.t1.exon1Gvermi12241.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3957047..3957107 +
Gvermi12241.t1.exon2Gvermi12241.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3957237..3957520 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12241.t1.intron1Gvermi12241.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3957108..3957236 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12241.t1.stop1Gvermi12241.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3957518..3957520 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12241.t1 ID=Gvermi12241.t1|Name=Gvermi12241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=115bp
MKYRHQVLSLYRRALRIAKSWEEPSERSYIVNEARTLVRRNKDIKSEDKI
AEKVQEFEARITTGVHYKIPYPRPTNVAPGATGKDPEVITPVYLDSYKQS
QNANRKAAREKPEY*
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spliced messenger RNA

>Gvermi12241.t1 ID=Gvermi12241.t1|Name=Gvermi12241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_3404:3957047..3957520+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATATCGACACCAAGTTTTGTCTCTTTATCGCAGAGCCTTGCGTAT
CGCGAAGTCATGGGAAGAACCAAGCGAACGTTCGTACATCGTAAATGAGG
CCAGGACTCTCGTTCGTAGGAACAAAGATATCAAGTCGGAAGACAAAATT
GCCGAAAAAGTCCAAGAGTTCGAAGCGAGGATAACAACTGGTGTTCATTA
TAAGATTCCGTACCCAAGGCCGACAAACGTTGCTCCAGGGGCGACTGGTA
AAGATCCAGAGGTCATCACACCAGTATATCTGGACTCATACAAACAATCA
CAAAATGCAAATCGCAAAGCAGCACGGGAAAAGCCAGAATACTGA
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protein sequence of Gvermi12241.t1

>Gvermi12241.t1 ID=Gvermi12241.t1|Name=Gvermi12241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=115bp
MKYRHQVLSLYRRALRIAKSWEEPSERSYIVNEARTLVRRNKDIKSEDKI
AEKVQEFEARITTGVHYKIPYPRPTNVAPGATGKDPEVITPVYLDSYKQS
QNANRKAAREKPEY*
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mRNA from alignment at ScGOVlb_3404:3957047..3957520+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12241.t1 ID=Gvermi12241.t1|Name=Gvermi12241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp|location=Sequence derived from alignment at ScGOVlb_3404:3957047..3957520+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATATCGACACCAAGTTTTGTCTCTTTATCGCAGAGCCTTGCGTAT
CGCGAAGTCATGTAAGTCCATGAGCTCCACAGAATTATCACTGGTCAGAA
CGTTCGACATTTCGCAAATTGGGCGTCGCTAACCTGTTGAATTTCATAAC
AATCTTGCGTTGGGAACATATCGTTCTTCCAATTATTAAGGGGAAGAACC
AAGCGAACGTTCGTACATCGTAAATGAGGCCAGGACTCTCGTTCGTAGGA
ACAAAGATATCAAGTCGGAAGACAAAATTGCCGAAAAAGTCCAAGAGTTC
GAAGCGAGGATAACAACTGGTGTTCATTATAAGATTCCGTACCCAAGGCC
GACAAACGTTGCTCCAGGGGCGACTGGTAAAGATCCAGAGGTCATCACAC
CAGTATATCTGGACTCATACAAACAATCACAAAATGCAAATCGCAAAGCA
GCACGGGAAAAGCCAGAATACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3957047..3957520+

>Gvermi12241.t1 ID=Gvermi12241.t1|Name=Gvermi12241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=345bp|location=Sequence derived from alignment at ScGOVlb_3404:3957047..3957520+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATATCGACACCAAGTTTTGTCTCTTTATCGCAGAGCCTTGCGTAT
CGCGAAGTCATGGGAAGAACCAAGCGAACGTTCGTACATCGTAAATGAGG
CCAGGACTCTCGTTCGTAGGAACAAAGATATCAAGTCGGAAGACAAAATT
GCCGAAAAAGTCCAAGAGTTCGAAGCGAGGATAACAACTGGTGTTCATTA
TAAGATTCCGTACCCAAGGCCGACAAACGTTGCTCCAGGGGCGACTGGTA
AAGATCCAGAGGTCATCACACCAGTATATCTGGACTCATACAAACAATCA
CAAAATGCAAATCGCAAAGCAGCACGGGAAAAGCCAGAATACTGA
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