Gvermi12233.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12233.t1
Unique NameGvermi12233.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3932746..3934062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1205910.B005_1344
PFAMsMOSC,MOSC_N
Max annot lvl201174|Actinobacteria
KEGG koko:K07140
Evalue1.06e-08
EggNOG OGsCOG3217@1|root,COG3217@2|Bacteria,2GPWY@201174|Actinobacteria,4EKBY@85012|Streptosporangiales
DescriptionMOSC N-terminal beta barrel domain
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12233Gvermi12233Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3932746..3934062 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12233.t1.stop1Gvermi12233.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3932746..3932748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12233.t1.CDS1Gvermi12233.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3932746..3934062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12233.t1.exon1Gvermi12233.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3932746..3934062 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12233.t1.start1Gvermi12233.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3934060..3934062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12233.t1Gvermi12233.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3932746..3934062 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12233.t1 ID=Gvermi12233.t1|Name=Gvermi12233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=439bp
MTHQSGLLLIRAQDASVAIAFASRFALVCIANFAFGFGAGYLYSQYRNLC
ASDEEDDHAASAENDKPSVTQVSANNEQHSTTVPNSVVEEQYESLETASG
KFMDSQPSAAEPKSPPSTPLRADGEPISLRQNLVYPNAEQSASETPNQEL
HGDLEELNTALAKEDEKLSLASETTGFETAMGEEQENKSIVGLQIQPIHG
CLSQSVTSLKISQHGVENHLLYAVSEFTGRFISNEKVPALSQVAPVILDN
GHLSVSAPGQSTIVHEPRLWGQMKKITIHGVHYDAVDQGDNASKFFANYL
EIPGVRLLLVRPPPLLDEGHGVSQAWPSVDRPLLIASGESMTFAEDKCNA
PVGTNLVISGSESDLSRSKIINIDDNVFEVVKITGESSDGNAPMQHLHGG
GNALIPANLGKNECSLVKGQMISIVEFRSEQLVRESSD*
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spliced messenger RNA

>Gvermi12233.t1 ID=Gvermi12233.t1|Name=Gvermi12233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at ScGOVlb_3404:3932746..3934062- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACACCAATCCGGTCTTCTCCTCATCCGTGCGCAAGACGCGTCTGT
TGCTATCGCGTTTGCCTCTCGCTTTGCACTTGTTTGCATAGCGAACTTTG
CTTTTGGTTTTGGCGCCGGTTACCTCTACTCCCAATACCGCAACCTCTGC
GCGTCGGATGAGGAAGACGACCATGCTGCTTCTGCTGAGAACGACAAACC
TTCTGTCACTCAAGTATCTGCAAATAATGAACAACACTCGACAACTGTTC
CTAATTCAGTCGTCGAAGAGCAGTATGAGTCCTTGGAAACAGCCTCCGGG
AAATTTATGGACTCTCAGCCGTCTGCAGCTGAGCCGAAGTCACCGCCGAG
TACCCCCTTGAGGGCTGATGGTGAACCCATATCACTAAGGCAAAATTTAG
TATATCCGAATGCGGAACAGAGCGCATCCGAGACTCCCAACCAAGAGCTG
CATGGTGACCTTGAGGAGTTGAACACAGCTTTAGCAAAAGAAGATGAAAA
GCTGTCGCTTGCCTCCGAAACCACTGGTTTTGAGACAGCTATGGGAGAAG
AACAAGAAAACAAGAGTATTGTTGGTCTTCAAATCCAGCCCATTCATGGT
TGTCTCTCACAATCCGTAACCTCACTAAAGATCTCTCAACACGGCGTTGA
AAACCATCTTCTATACGCAGTTTCCGAATTTACGGGTCGATTCATTTCCA
ACGAGAAGGTCCCGGCGCTCTCACAGGTTGCCCCGGTCATTCTTGACAAT
GGTCACTTGAGTGTTTCGGCGCCAGGTCAATCGACAATAGTACACGAACC
AAGACTTTGGGGCCAGATGAAAAAGATAACTATTCACGGCGTTCACTACG
ATGCCGTCGATCAGGGTGACAATGCGTCAAAGTTCTTTGCAAACTACTTG
GAAATTCCTGGAGTTCGTCTGTTGTTGGTTCGACCGCCGCCACTCTTGGA
CGAAGGCCATGGCGTATCTCAGGCCTGGCCGTCTGTCGATCGCCCACTGC
TCATTGCCAGCGGCGAAAGTATGACATTTGCTGAGGACAAGTGCAACGCG
CCTGTAGGAACAAACCTAGTCATTTCAGGCTCTGAATCAGATTTGTCAAG
GTCCAAAATCATAAACATTGATGACAACGTGTTTGAAGTTGTGAAAATTA
CAGGTGAAAGTTCGGATGGAAATGCTCCCATGCAGCATCTGCATGGAGGT
GGAAACGCTCTGATTCCTGCCAACCTTGGAAAAAACGAATGTTCTCTTGT
GAAAGGACAGATGATTAGTATCGTAGAGTTCCGGTCAGAACAGCTTGTCA
GAGAATCTTCCGATTGA
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protein sequence of Gvermi12233.t1

>Gvermi12233.t1 ID=Gvermi12233.t1|Name=Gvermi12233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=439bp
MTHQSGLLLIRAQDASVAIAFASRFALVCIANFAFGFGAGYLYSQYRNLC
ASDEEDDHAASAENDKPSVTQVSANNEQHSTTVPNSVVEEQYESLETASG
KFMDSQPSAAEPKSPPSTPLRADGEPISLRQNLVYPNAEQSASETPNQEL
HGDLEELNTALAKEDEKLSLASETTGFETAMGEEQENKSIVGLQIQPIHG
CLSQSVTSLKISQHGVENHLLYAVSEFTGRFISNEKVPALSQVAPVILDN
GHLSVSAPGQSTIVHEPRLWGQMKKITIHGVHYDAVDQGDNASKFFANYL
EIPGVRLLLVRPPPLLDEGHGVSQAWPSVDRPLLIASGESMTFAEDKCNA
PVGTNLVISGSESDLSRSKIINIDDNVFEVVKITGESSDGNAPMQHLHGG
GNALIPANLGKNECSLVKGQMISIVEFRSEQLVRESSD*
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mRNA from alignment at ScGOVlb_3404:3932746..3934062-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12233.t1 ID=Gvermi12233.t1|Name=Gvermi12233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at ScGOVlb_3404:3932746..3934062- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACACCAATCCGGTCTTCTCCTCATCCGTGCGCAAGACGCGTCTGT
TGCTATCGCGTTTGCCTCTCGCTTTGCACTTGTTTGCATAGCGAACTTTG
CTTTTGGTTTTGGCGCCGGTTACCTCTACTCCCAATACCGCAACCTCTGC
GCGTCGGATGAGGAAGACGACCATGCTGCTTCTGCTGAGAACGACAAACC
TTCTGTCACTCAAGTATCTGCAAATAATGAACAACACTCGACAACTGTTC
CTAATTCAGTCGTCGAAGAGCAGTATGAGTCCTTGGAAACAGCCTCCGGG
AAATTTATGGACTCTCAGCCGTCTGCAGCTGAGCCGAAGTCACCGCCGAG
TACCCCCTTGAGGGCTGATGGTGAACCCATATCACTAAGGCAAAATTTAG
TATATCCGAATGCGGAACAGAGCGCATCCGAGACTCCCAACCAAGAGCTG
CATGGTGACCTTGAGGAGTTGAACACAGCTTTAGCAAAAGAAGATGAAAA
GCTGTCGCTTGCCTCCGAAACCACTGGTTTTGAGACAGCTATGGGAGAAG
AACAAGAAAACAAGAGTATTGTTGGTCTTCAAATCCAGCCCATTCATGGT
TGTCTCTCACAATCCGTAACCTCACTAAAGATCTCTCAACACGGCGTTGA
AAACCATCTTCTATACGCAGTTTCCGAATTTACGGGTCGATTCATTTCCA
ACGAGAAGGTCCCGGCGCTCTCACAGGTTGCCCCGGTCATTCTTGACAAT
GGTCACTTGAGTGTTTCGGCGCCAGGTCAATCGACAATAGTACACGAACC
AAGACTTTGGGGCCAGATGAAAAAGATAACTATTCACGGCGTTCACTACG
ATGCCGTCGATCAGGGTGACAATGCGTCAAAGTTCTTTGCAAACTACTTG
GAAATTCCTGGAGTTCGTCTGTTGTTGGTTCGACCGCCGCCACTCTTGGA
CGAAGGCCATGGCGTATCTCAGGCCTGGCCGTCTGTCGATCGCCCACTGC
TCATTGCCAGCGGCGAAAGTATGACATTTGCTGAGGACAAGTGCAACGCG
CCTGTAGGAACAAACCTAGTCATTTCAGGCTCTGAATCAGATTTGTCAAG
GTCCAAAATCATAAACATTGATGACAACGTGTTTGAAGTTGTGAAAATTA
CAGGTGAAAGTTCGGATGGAAATGCTCCCATGCAGCATCTGCATGGAGGT
GGAAACGCTCTGATTCCTGCCAACCTTGGAAAAAACGAATGTTCTCTTGT
GAAAGGACAGATGATTAGTATCGTAGAGTTCCGGTCAGAACAGCTTGTCA
GAGAATCTTCCGATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3932746..3934062-

>Gvermi12233.t1 ID=Gvermi12233.t1|Name=Gvermi12233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1317bp|location=Sequence derived from alignment at ScGOVlb_3404:3932746..3934062- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACACCAATCCGGTCTTCTCCTCATCCGTGCGCAAGACGCGTCTGT
TGCTATCGCGTTTGCCTCTCGCTTTGCACTTGTTTGCATAGCGAACTTTG
CTTTTGGTTTTGGCGCCGGTTACCTCTACTCCCAATACCGCAACCTCTGC
GCGTCGGATGAGGAAGACGACCATGCTGCTTCTGCTGAGAACGACAAACC
TTCTGTCACTCAAGTATCTGCAAATAATGAACAACACTCGACAACTGTTC
CTAATTCAGTCGTCGAAGAGCAGTATGAGTCCTTGGAAACAGCCTCCGGG
AAATTTATGGACTCTCAGCCGTCTGCAGCTGAGCCGAAGTCACCGCCGAG
TACCCCCTTGAGGGCTGATGGTGAACCCATATCACTAAGGCAAAATTTAG
TATATCCGAATGCGGAACAGAGCGCATCCGAGACTCCCAACCAAGAGCTG
CATGGTGACCTTGAGGAGTTGAACACAGCTTTAGCAAAAGAAGATGAAAA
GCTGTCGCTTGCCTCCGAAACCACTGGTTTTGAGACAGCTATGGGAGAAG
AACAAGAAAACAAGAGTATTGTTGGTCTTCAAATCCAGCCCATTCATGGT
TGTCTCTCACAATCCGTAACCTCACTAAAGATCTCTCAACACGGCGTTGA
AAACCATCTTCTATACGCAGTTTCCGAATTTACGGGTCGATTCATTTCCA
ACGAGAAGGTCCCGGCGCTCTCACAGGTTGCCCCGGTCATTCTTGACAAT
GGTCACTTGAGTGTTTCGGCGCCAGGTCAATCGACAATAGTACACGAACC
AAGACTTTGGGGCCAGATGAAAAAGATAACTATTCACGGCGTTCACTACG
ATGCCGTCGATCAGGGTGACAATGCGTCAAAGTTCTTTGCAAACTACTTG
GAAATTCCTGGAGTTCGTCTGTTGTTGGTTCGACCGCCGCCACTCTTGGA
CGAAGGCCATGGCGTATCTCAGGCCTGGCCGTCTGTCGATCGCCCACTGC
TCATTGCCAGCGGCGAAAGTATGACATTTGCTGAGGACAAGTGCAACGCG
CCTGTAGGAACAAACCTAGTCATTTCAGGCTCTGAATCAGATTTGTCAAG
GTCCAAAATCATAAACATTGATGACAACGTGTTTGAAGTTGTGAAAATTA
CAGGTGAAAGTTCGGATGGAAATGCTCCCATGCAGCATCTGCATGGAGGT
GGAAACGCTCTGATTCCTGCCAACCTTGGAAAAAACGAATGTTCTCTTGT
GAAAGGACAGATGATTAGTATCGTAGAGTTCCGGTCAGAACAGCTTGTCA
GAGAATCTTCCGATTGA
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