Gvermi12230.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12230.t1
Unique NameGvermi12230.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3919758..3920936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH047CT
PFAMsEpimerase
Max annot lvl2759|Eukaryota
GOsGO:0000427,GO:0000428,GO:0001101,GO:0001871,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0005840,GO:0005911,GO:0005975,GO:0005996,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009657,GO:0009658,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0009991,GO:0010035,GO:0010287,GO:0010297,GO:0010319,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030054,GO:0030246,GO:0030247,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031668,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032544,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0042579,GO:0042631,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0048046,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0104004,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2001141
Evalue1.64e-119
EggNOG OGs2CMCJ@1|root,2QPZ0@2759|Eukaryota
DescriptionNAD dependent epimerase/dehydratase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12230Gvermi12230Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3919758..3920936 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12230.t1.stop1Gvermi12230.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3919758..3919760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12230.t1.CDS1Gvermi12230.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3919758..3920936 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12230.t1.exon1Gvermi12230.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3919758..3920936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12230.t1.start1Gvermi12230.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3920934..3920936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12230.t1Gvermi12230.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3919758..3920936 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12230.t1 ID=Gvermi12230.t1|Name=Gvermi12230.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=393bp
MAPPAAFAPPASLASPLALPSPSPSPSSFAARRAPAPRAARRRRVAVVRA
AAAAAPLHGAHALVIGGTRFSGLYLVHELAARGAHVTVLNRGSRPVGHPS
LRVPHETDHHFAQRNARTAALVADRTDERALADALERRRFDVVFDNNGRK
LADSKPLADIAARMGAHFVYMSSAGVYLKSDVMPHIEGDPTDPNSRHKGK
LDTEHYLRSSALTFTAIRPTYIYGALNYNPLEQWFFERIDRGLPICIPGH
GAHLTGLGHVRDLAAAMAACALNPAAYGQVYNVQDRTAVSFDGVARLCAN
AMGKPPPEIVHYDPSRFDFGKKKPFPFRPQHFFCSPTKALRELDWTIQYD
LAAGFQDAYQNDFVHKKQSGGLKNDFETDHMILNAVKGASVV*
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spliced messenger RNA

>Gvermi12230.t1 ID=Gvermi12230.t1|Name=Gvermi12230.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at ScGOVlb_3404:3919758..3920936- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCCCGCAGCCTTTGCGCCGCCGGCCTCCCTCGCATCGCCGTT
GGCGCTGCCGTCGCCGTCGCCGTCGCCGTCGTCCTTCGCCGCGCGCCGCG
CGCCTGCCCCCCGCGCCGCGCGCCGTCGTCGCGTCGCCGTCGTGCGCGCC
GCCGCCGCCGCCGCCCCGCTGCACGGCGCCCACGCGCTCGTCATCGGCGG
CACGCGCTTCTCCGGCCTCTACCTGGTGCACGAGCTCGCCGCGCGCGGCG
CCCACGTCACCGTGCTCAACCGCGGCTCGCGCCCGGTGGGCCACCCGTCG
CTGCGCGTCCCGCACGAGACGGACCACCACTTTGCCCAGCGCAACGCGCG
CACCGCCGCGCTCGTCGCCGACCGCACCGACGAGCGCGCGCTCGCCGACG
CGCTTGAGCGCCGCCGCTTCGACGTCGTCTTCGACAACAACGGCCGCAAG
CTGGCCGACTCCAAGCCGCTCGCCGACATTGCCGCGCGCATGGGCGCCCA
CTTTGTGTACATGTCGTCGGCCGGCGTGTACCTCAAGTCCGACGTCATGC
CGCACATCGAGGGCGACCCCACCGACCCCAACTCCAGGCACAAGGGCAAG
CTGGACACCGAGCACTACCTGCGCTCGTCCGCCCTCACCTTCACCGCCAT
CAGGCCCACCTACATCTACGGCGCCCTCAACTACAACCCGCTGGAGCAGT
GGTTCTTCGAGCGCATCGATCGCGGCCTGCCCATCTGCATCCCGGGCCAC
GGCGCCCACCTCACGGGCCTGGGCCACGTCCGCGACCTCGCTGCCGCCAT
GGCTGCCTGCGCCCTCAACCCCGCAGCCTACGGACAGGTGTACAACGTCC
AGGACCGCACCGCCGTCTCCTTCGACGGCGTGGCCAGGCTGTGCGCAAAC
GCCATGGGTAAGCCGCCGCCCGAGATCGTGCACTACGACCCCAGCCGCTT
TGATTTTGGCAAAAAGAAGCCCTTCCCCTTCCGGCCGCAGCACTTTTTCT
GCTCCCCTACCAAGGCCCTGCGCGAGCTGGACTGGACCATCCAGTATGAC
CTCGCTGCCGGCTTTCAAGACGCCTACCAGAACGACTTTGTGCACAAGAA
GCAAAGCGGTGGCCTCAAGAATGATTTCGAAACCGATCACATGATCCTCA
ACGCCGTCAAGGGCGCCTCTGTTGTTTAA
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protein sequence of Gvermi12230.t1

>Gvermi12230.t1 ID=Gvermi12230.t1|Name=Gvermi12230.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=393bp
MAPPAAFAPPASLASPLALPSPSPSPSSFAARRAPAPRAARRRRVAVVRA
AAAAAPLHGAHALVIGGTRFSGLYLVHELAARGAHVTVLNRGSRPVGHPS
LRVPHETDHHFAQRNARTAALVADRTDERALADALERRRFDVVFDNNGRK
LADSKPLADIAARMGAHFVYMSSAGVYLKSDVMPHIEGDPTDPNSRHKGK
LDTEHYLRSSALTFTAIRPTYIYGALNYNPLEQWFFERIDRGLPICIPGH
GAHLTGLGHVRDLAAAMAACALNPAAYGQVYNVQDRTAVSFDGVARLCAN
AMGKPPPEIVHYDPSRFDFGKKKPFPFRPQHFFCSPTKALRELDWTIQYD
LAAGFQDAYQNDFVHKKQSGGLKNDFETDHMILNAVKGASVV*
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mRNA from alignment at ScGOVlb_3404:3919758..3920936-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12230.t1 ID=Gvermi12230.t1|Name=Gvermi12230.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at ScGOVlb_3404:3919758..3920936- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCCCGCAGCCTTTGCGCCGCCGGCCTCCCTCGCATCGCCGTT
GGCGCTGCCGTCGCCGTCGCCGTCGCCGTCGTCCTTCGCCGCGCGCCGCG
CGCCTGCCCCCCGCGCCGCGCGCCGTCGTCGCGTCGCCGTCGTGCGCGCC
GCCGCCGCCGCCGCCCCGCTGCACGGCGCCCACGCGCTCGTCATCGGCGG
CACGCGCTTCTCCGGCCTCTACCTGGTGCACGAGCTCGCCGCGCGCGGCG
CCCACGTCACCGTGCTCAACCGCGGCTCGCGCCCGGTGGGCCACCCGTCG
CTGCGCGTCCCGCACGAGACGGACCACCACTTTGCCCAGCGCAACGCGCG
CACCGCCGCGCTCGTCGCCGACCGCACCGACGAGCGCGCGCTCGCCGACG
CGCTTGAGCGCCGCCGCTTCGACGTCGTCTTCGACAACAACGGCCGCAAG
CTGGCCGACTCCAAGCCGCTCGCCGACATTGCCGCGCGCATGGGCGCCCA
CTTTGTGTACATGTCGTCGGCCGGCGTGTACCTCAAGTCCGACGTCATGC
CGCACATCGAGGGCGACCCCACCGACCCCAACTCCAGGCACAAGGGCAAG
CTGGACACCGAGCACTACCTGCGCTCGTCCGCCCTCACCTTCACCGCCAT
CAGGCCCACCTACATCTACGGCGCCCTCAACTACAACCCGCTGGAGCAGT
GGTTCTTCGAGCGCATCGATCGCGGCCTGCCCATCTGCATCCCGGGCCAC
GGCGCCCACCTCACGGGCCTGGGCCACGTCCGCGACCTCGCTGCCGCCAT
GGCTGCCTGCGCCCTCAACCCCGCAGCCTACGGACAGGTGTACAACGTCC
AGGACCGCACCGCCGTCTCCTTCGACGGCGTGGCCAGGCTGTGCGCAAAC
GCCATGGGTAAGCCGCCGCCCGAGATCGTGCACTACGACCCCAGCCGCTT
TGATTTTGGCAAAAAGAAGCCCTTCCCCTTCCGGCCGCAGCACTTTTTCT
GCTCCCCTACCAAGGCCCTGCGCGAGCTGGACTGGACCATCCAGTATGAC
CTCGCTGCCGGCTTTCAAGACGCCTACCAGAACGACTTTGTGCACAAGAA
GCAAAGCGGTGGCCTCAAGAATGATTTCGAAACCGATCACATGATCCTCA
ACGCCGTCAAGGGCGCCTCTGTTGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3919758..3920936-

>Gvermi12230.t1 ID=Gvermi12230.t1|Name=Gvermi12230.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1179bp|location=Sequence derived from alignment at ScGOVlb_3404:3919758..3920936- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCCCGCAGCCTTTGCGCCGCCGGCCTCCCTCGCATCGCCGTT
GGCGCTGCCGTCGCCGTCGCCGTCGCCGTCGTCCTTCGCCGCGCGCCGCG
CGCCTGCCCCCCGCGCCGCGCGCCGTCGTCGCGTCGCCGTCGTGCGCGCC
GCCGCCGCCGCCGCCCCGCTGCACGGCGCCCACGCGCTCGTCATCGGCGG
CACGCGCTTCTCCGGCCTCTACCTGGTGCACGAGCTCGCCGCGCGCGGCG
CCCACGTCACCGTGCTCAACCGCGGCTCGCGCCCGGTGGGCCACCCGTCG
CTGCGCGTCCCGCACGAGACGGACCACCACTTTGCCCAGCGCAACGCGCG
CACCGCCGCGCTCGTCGCCGACCGCACCGACGAGCGCGCGCTCGCCGACG
CGCTTGAGCGCCGCCGCTTCGACGTCGTCTTCGACAACAACGGCCGCAAG
CTGGCCGACTCCAAGCCGCTCGCCGACATTGCCGCGCGCATGGGCGCCCA
CTTTGTGTACATGTCGTCGGCCGGCGTGTACCTCAAGTCCGACGTCATGC
CGCACATCGAGGGCGACCCCACCGACCCCAACTCCAGGCACAAGGGCAAG
CTGGACACCGAGCACTACCTGCGCTCGTCCGCCCTCACCTTCACCGCCAT
CAGGCCCACCTACATCTACGGCGCCCTCAACTACAACCCGCTGGAGCAGT
GGTTCTTCGAGCGCATCGATCGCGGCCTGCCCATCTGCATCCCGGGCCAC
GGCGCCCACCTCACGGGCCTGGGCCACGTCCGCGACCTCGCTGCCGCCAT
GGCTGCCTGCGCCCTCAACCCCGCAGCCTACGGACAGGTGTACAACGTCC
AGGACCGCACCGCCGTCTCCTTCGACGGCGTGGCCAGGCTGTGCGCAAAC
GCCATGGGTAAGCCGCCGCCCGAGATCGTGCACTACGACCCCAGCCGCTT
TGATTTTGGCAAAAAGAAGCCCTTCCCCTTCCGGCCGCAGCACTTTTTCT
GCTCCCCTACCAAGGCCCTGCGCGAGCTGGACTGGACCATCCAGTATGAC
CTCGCTGCCGGCTTTCAAGACGCCTACCAGAACGACTTTGTGCACAAGAA
GCAAAGCGGTGGCCTCAAGAATGATTTCGAAACCGATCACATGATCCTCA
ACGCCGTCAAGGGCGCCTCTGTTGTTTAA
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