Gvermi12228.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12228.t1
Unique NameGvermi12228.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3912893..3913321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog414684.RC1_0725
Preferred namerpsH
PFAMsRibosomal_S8
Max annot lvl204441|Rhodospirillales
KEGG koko:K02994
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue1.39e-35
EggNOG OGsCOG0096@1|root,COG0096@2|Bacteria,1RDG3@1224|Proteobacteria,2U6ZH@28211|Alphaproteobacteria,2JS56@204441|Rhodospirillales
DescriptionOne of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12228Gvermi12228Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3912893..3913321 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12228.t1.start1Gvermi12228.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3912893..3912895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12228.t1.CDS1Gvermi12228.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3912893..3913321 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12228.t1.exon1Gvermi12228.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3912893..3913321 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12228.t1.stop1Gvermi12228.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3913319..3913321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12228.t1Gvermi12228.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3912893..3913321 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12228.t1 ID=Gvermi12228.t1|Name=Gvermi12228.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=143bp
MRGRGVLLTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGY
VASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRS
IAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF*
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spliced messenger RNA

>Gvermi12228.t1 ID=Gvermi12228.t1|Name=Gvermi12228.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_3404:3912893..3913321+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGCAGGGGCGTATTGCTTACTGATCCCATCAGCGATCTGTTCGC
CAGAATTCGCAACGGTCAAAACGCCAAGCGCGCCATCATTCATCACCCTT
ATTCTCGCTTCGCCAAACAAGTAGTCGACGTCCTCATCAGACAAGGCTAT
GTCGCCTCTCTCAACATCATTCCGCCACAAAGTCCTAGAGCGCCGCAGTT
TAATCAAATGCAAATTGCTCTCAAGTACGACAATGAGGGGCTGCCGGCCA
TCAAGCGCATTCGACGTGTTTCGAAGCCTTCGAGAAGGATTTACCGGTCC
ATTGCCCAGTTGCCGATGGCATCGAACGGGCTTGGCACGTGGATCTTATC
TACGCCCAAGGGAGTTCTTCATTGCGCGGAAGCTCGAGAAATGAATGTGG
GCGGTGAAGTTCTCGGCGAAGTATTCTGA
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protein sequence of Gvermi12228.t1

>Gvermi12228.t1 ID=Gvermi12228.t1|Name=Gvermi12228.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=143bp
MRGRGVLLTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGY
VASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRS
IAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF*
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mRNA from alignment at ScGOVlb_3404:3912893..3913321+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12228.t1 ID=Gvermi12228.t1|Name=Gvermi12228.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_3404:3912893..3913321+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGGCAGGGGCGTATTGCTTACTGATCCCATCAGCGATCTGTTCGC
CAGAATTCGCAACGGTCAAAACGCCAAGCGCGCCATCATTCATCACCCTT
ATTCTCGCTTCGCCAAACAAGTAGTCGACGTCCTCATCAGACAAGGCTAT
GTCGCCTCTCTCAACATCATTCCGCCACAAAGTCCTAGAGCGCCGCAGTT
TAATCAAATGCAAATTGCTCTCAAGTACGACAATGAGGGGCTGCCGGCCA
TCAAGCGCATTCGACGTGTTTCGAAGCCTTCGAGAAGGATTTACCGGTCC
ATTGCCCAGTTGCCGATGGCATCGAACGGGCTTGGCACGTGGATCTTATC
TACGCCCAAGGGAGTTCTTCATTGCGCGGAAGCTCGAGAAATGAATGTGG
GCGGTGAAGTTCTCGGCGAAGTATTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3912893..3913321+

>Gvermi12228.t1 ID=Gvermi12228.t1|Name=Gvermi12228.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=429bp|location=Sequence derived from alignment at ScGOVlb_3404:3912893..3913321+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGGCAGGGGCGTATTGCTTACTGATCCCATCAGCGATCTGTTCGC
CAGAATTCGCAACGGTCAAAACGCCAAGCGCGCCATCATTCATCACCCTT
ATTCTCGCTTCGCCAAACAAGTAGTCGACGTCCTCATCAGACAAGGCTAT
GTCGCCTCTCTCAACATCATTCCGCCACAAAGTCCTAGAGCGCCGCAGTT
TAATCAAATGCAAATTGCTCTCAAGTACGACAATGAGGGGCTGCCGGCCA
TCAAGCGCATTCGACGTGTTTCGAAGCCTTCGAGAAGGATTTACCGGTCC
ATTGCCCAGTTGCCGATGGCATCGAACGGGCTTGGCACGTGGATCTTATC
TACGCCCAAGGGAGTTCTTCATTGCGCGGAAGCTCGAGAAATGAATGTGG
GCGGTGAAGTTCTCGGCGAAGTATTCTGA
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