Gvermi12222.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12222.t1
Unique Name	Gvermi12222.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3888545..3889711 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	313612.L8106_21077
PFAMs	EAL,GAF,GAF_2,GGDEF,PAS,PAS_3,PAS_4,PAS_9
Max annot lvl	1117\|Cyanobacteria
Evalue	2.15e-09
EggNOG OGs	COG2203@1\|root,COG5001@1\|root,COG2203@2\|Bacteria,COG5001@2\|Bacteria,1G0SY@1117\|Cyanobacteria,1H7V4@1150\|Oscillatoriales
Description	signal transduction protein containing a membrane domain an EAL and a GGDEF domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12222	Gvermi12222	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3888545..3889711 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12222.t1.start1	Gvermi12222.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3888545..3888547 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12222.t1.CDS1	Gvermi12222.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3888545..3889711 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12222.t1.exon1	Gvermi12222.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3888545..3889711 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12222.t1.stop1	Gvermi12222.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3889709..3889711 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12222.t1	Gvermi12222.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3888545..3889711 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3888545..3889711+
coding sequence from alignment at ScGOVlb_3404:3888545..3889711+

mRNA sequence

>Gvermi12222.t1 ID=Gvermi12222.t1|Name=Gvermi12222.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=389bp
MESNAALASAVPLDLPLWDDGFLAEPHRAASPSDSNASEFDLTLPLHDDS
ALIIPQNFHPQSLFVSSKQSVDVIHPDLSPQNLFCIPLTDADAHSVDDSS
PEQPHTTPATTTTPATTTTPSPHLPSAIRPNVSHTRRCRAKVNTNFDRLL
ELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYR
WVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSVALRY
VTGALPPSVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPL
LNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPAT
LNMANDIAIMFGKAFTGMDSSSYASQSSSFSHEYSRYG*

spliced messenger RNA

>Gvermi12222.t1 ID=Gvermi12222.t1|Name=Gvermi12222.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_3404:3888545..3889711+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCAAACGCTGCGCTCGCGAGTGCCGTTCCGTTAGACCTTCCGCT
GTGGGACGACGGTTTTCTGGCTGAACCTCACCGGGCCGCGTCCCCATCGG
ACTCAAATGCTTCTGAATTCGACCTCACCCTACCACTTCACGACGACTCC
GCCCTAATTATTCCACAGAATTTTCACCCACAGTCGCTCTTTGTCTCCTC
TAAGCAGTCAGTCGATGTCATACATCCTGATCTCTCTCCACAAAATCTCT
TCTGCATACCGCTAACCGATGCTGACGCTCACTCCGTGGACGACTcatca
ccagagcaaccgcacaccactcccgcaaccaccaccactcccgcaaccac
caccactccctccccccaccTGCCGTCCGCCATTCGTCCAAATGTGTCCC
ACACACGTCGCTGTCGCGCTAAAGTAAACACCAACTTCGACCGACTGCTC
GAACTGTTACCCGAACCGCCAGCCGGTGTCGAAGTCAAGCACAAAGCCCA
AATACTGCAATATGCTATCCACCACTACAGGCAGGTCAGCAGCAAAAACC
GTCAGCTCGAAATGAGACTCGCACTCAGGTCACCGTCCGAGATGTATCGA
TGGGTACAGTCCGTTGTGTCAGCCACCCCCAATCTCAAGGATGCGCTCAA
GCCCTTCATGGCCATCATTTGTCTCACAAAGAATTGGAAGTACGCCGAAC
TATGGGCGCCGCAAACGCGGGCCGGGAGCTCATCCGTTGCGCTCAGGTAT
GTGACTGGTGCTCTTCCGCCCAGTGTTGACGGAGAAGCCTTGATGAGACT
CAGAAAGTATCGAGGACACTCGAGAAAATACAAGTTCTTTCCTCGATCCG
GCGTGCCAGGGAGAGTGTATCTTACCATGAGGCCAGAGTGGTTGCCGCTT
CTCAACGACCCTATAGCGTTTCCGCGCGCACCTCATGCAGTACAGAACAA
AGTGGAGGTCACCTTTGCCGTTCCTGTCATTGTTAACGGTGTTGTGCAAA
TGGTTGTAGAATTTTATGATACGGAAAGAAGGGACTATGATCCGGCCACT
CTCAACATGGCAAACGACATTGCAATTATGTTTGGGAAGGCTTTCACAGG
CATGGATTCATCTTCATATGCCTCTCAGTCCAGCAGCTTTTCGCATGAAT
ATTCTCGCTACGGTTGA

protein sequence of Gvermi12222.t1

>Gvermi12222.t1 ID=Gvermi12222.t1|Name=Gvermi12222.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=389bp
MESNAALASAVPLDLPLWDDGFLAEPHRAASPSDSNASEFDLTLPLHDDS
ALIIPQNFHPQSLFVSSKQSVDVIHPDLSPQNLFCIPLTDADAHSVDDSS
PEQPHTTPATTTTPATTTTPSPHLPSAIRPNVSHTRRCRAKVNTNFDRLL
ELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYR
WVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSVALRY
VTGALPPSVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPL
LNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPAT
LNMANDIAIMFGKAFTGMDSSSYASQSSSFSHEYSRYG*

mRNA from alignment at ScGOVlb_3404:3888545..3889711+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12222.t1 ID=Gvermi12222.t1|Name=Gvermi12222.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_3404:3888545..3889711+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTCAAACGCTGCGCTCGCGAGTGCCGTTCCGTTAGACCTTCCGCT
GTGGGACGACGGTTTTCTGGCTGAACCTCACCGGGCCGCGTCCCCATCGG
ACTCAAATGCTTCTGAATTCGACCTCACCCTACCACTTCACGACGACTCC
GCCCTAATTATTCCACAGAATTTTCACCCACAGTCGCTCTTTGTCTCCTC
TAAGCAGTCAGTCGATGTCATACATCCTGATCTCTCTCCACAAAATCTCT
TCTGCATACCGCTAACCGATGCTGACGCTCACTCCGTGGACGACTcatca
ccagagcaaccgcacaccactcccgcaaccaccaccactcccgcaaccac
caccactccctccccccaccTGCCGTCCGCCATTCGTCCAAATGTGTCCC
ACACACGTCGCTGTCGCGCTAAAGTAAACACCAACTTCGACCGACTGCTC
GAACTGTTACCCGAACCGCCAGCCGGTGTCGAAGTCAAGCACAAAGCCCA
AATACTGCAATATGCTATCCACCACTACAGGCAGGTCAGCAGCAAAAACC
GTCAGCTCGAAATGAGACTCGCACTCAGGTCACCGTCCGAGATGTATCGA
TGGGTACAGTCCGTTGTGTCAGCCACCCCCAATCTCAAGGATGCGCTCAA
GCCCTTCATGGCCATCATTTGTCTCACAAAGAATTGGAAGTACGCCGAAC
TATGGGCGCCGCAAACGCGGGCCGGGAGCTCATCCGTTGCGCTCAGGTAT
GTGACTGGTGCTCTTCCGCCCAGTGTTGACGGAGAAGCCTTGATGAGACT
CAGAAAGTATCGAGGACACTCGAGAAAATACAAGTTCTTTCCTCGATCCG
GCGTGCCAGGGAGAGTGTATCTTACCATGAGGCCAGAGTGGTTGCCGCTT
CTCAACGACCCTATAGCGTTTCCGCGCGCACCTCATGCAGTACAGAACAA
AGTGGAGGTCACCTTTGCCGTTCCTGTCATTGTTAACGGTGTTGTGCAAA
TGGTTGTAGAATTTTATGATACGGAAAGAAGGGACTATGATCCGGCCACT
CTCAACATGGCAAACGACATTGCAATTATGTTTGGGAAGGCTTTCACAGG
CATGGATTCATCTTCATATGCCTCTCAGTCCAGCAGCTTTTCGCATGAAT
ATTCTCGCTACGGTTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3888545..3889711+

>Gvermi12222.t1 ID=Gvermi12222.t1|Name=Gvermi12222.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1167bp|location=Sequence derived from alignment at ScGOVlb_3404:3888545..3889711+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTCAAACGCTGCGCTCGCGAGTGCCGTTCCGTTAGACCTTCCGCT
GTGGGACGACGGTTTTCTGGCTGAACCTCACCGGGCCGCGTCCCCATCGG
ACTCAAATGCTTCTGAATTCGACCTCACCCTACCACTTCACGACGACTCC
GCCCTAATTATTCCACAGAATTTTCACCCACAGTCGCTCTTTGTCTCCTC
TAAGCAGTCAGTCGATGTCATACATCCTGATCTCTCTCCACAAAATCTCT
TCTGCATACCGCTAACCGATGCTGACGCTCACTCCGTGGACGACTcatca
ccagagcaaccgcacaccactcccgcaaccaccaccactcccgcaaccac
caccactccctccccccaccTGCCGTCCGCCATTCGTCCAAATGTGTCCC
ACACACGTCGCTGTCGCGCTAAAGTAAACACCAACTTCGACCGACTGCTC
GAACTGTTACCCGAACCGCCAGCCGGTGTCGAAGTCAAGCACAAAGCCCA
AATACTGCAATATGCTATCCACCACTACAGGCAGGTCAGCAGCAAAAACC
GTCAGCTCGAAATGAGACTCGCACTCAGGTCACCGTCCGAGATGTATCGA
TGGGTACAGTCCGTTGTGTCAGCCACCCCCAATCTCAAGGATGCGCTCAA
GCCCTTCATGGCCATCATTTGTCTCACAAAGAATTGGAAGTACGCCGAAC
TATGGGCGCCGCAAACGCGGGCCGGGAGCTCATCCGTTGCGCTCAGGTAT
GTGACTGGTGCTCTTCCGCCCAGTGTTGACGGAGAAGCCTTGATGAGACT
CAGAAAGTATCGAGGACACTCGAGAAAATACAAGTTCTTTCCTCGATCCG
GCGTGCCAGGGAGAGTGTATCTTACCATGAGGCCAGAGTGGTTGCCGCTT
CTCAACGACCCTATAGCGTTTCCGCGCGCACCTCATGCAGTACAGAACAA
AGTGGAGGTCACCTTTGCCGTTCCTGTCATTGTTAACGGTGTTGTGCAAA
TGGTTGTAGAATTTTATGATACGGAAAGAAGGGACTATGATCCGGCCACT
CTCAACATGGCAAACGACATTGCAATTATGTTTGGGAAGGCTTTCACAGG
CATGGATTCATCTTCATATGCCTCTCAGTCCAGCAGCTTTTCGCATGAAT
ATTCTCGCTACGGTTGA