Gvermi12210.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12210.t1
Unique NameGvermi12210.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length584
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3854830..3856581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog459495.SPLC1_S051800
PFAMsCalx-beta,DUF5122,HemolysinCabind,SBBP
Max annot lvl1117|Cyanobacteria
Evalue4.11e-18
EggNOG OGsCOG1404@1|root,COG2931@1|root,COG1404@2|Bacteria,COG2931@2|Bacteria,1G67S@1117|Cyanobacteria,1HC0B@1150|Oscillatoriales
DescriptionDomain of unknown function (DUF5122) beta-propeller
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12210Gvermi12210Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3854830..3856581 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12210.t1.start1Gvermi12210.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3854830..3854832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12210.t1.CDS1Gvermi12210.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3854830..3856581 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12210.t1.exon1Gvermi12210.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3854830..3856581 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12210.t1.stop1Gvermi12210.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3856579..3856581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12210.t1Gvermi12210.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3854830..3856581 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12210.t1 ID=Gvermi12210.t1|Name=Gvermi12210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=584bp
MQQHIWWVRLVTALWALWALCAFKAQASTVLISQAFKGRAFGSILSDDVA
KRISVGEDGSIYLAGVTTAHDDKNEAWGDVQSEELTGKRDIFIAKLSVAG
EVQWVKRTGSTQDDELNDLKLTSNALYLCGSTMGNYGRPVNGSSDAYIMK
FTLNGEKVWTKPFQFGSKGEDVCNAIDIDESGRVYVVGSTNGLIYGTSKP
EPHNFHHFVAKFEEVSDSPFGLRTVVGRQRGSVGNSSANQVAVVDDLLYV
MTMSSRSQSRGETHATYLNIIDREALFLHKLHMLKSSNGVSFQGVRMATS
AATKNAYVVGFTLLDDMRQKYEVLKFNYSQNYKQGGIEWNTLLGPVSLSF
KMLQFGDVQNNKAHKNTSIAMEYQLPSIAVDESNKSVYVAGTEDGFYRTN
NAGDEGLVVAPFYKLNSTSGEVIERWHRSTNIPHDRQELTDIAMDPVRTV
VYTGAWWLGAEAKSSVLLGSFGSTIHSSIADEWSTKPSFMQESSEDTHSN
SGSKSMDSGRAGSIIMLTIACVGVIATALLSIGSRWRKSNPKTFRSGDSQ
ADEFDNISVGKHSVIKFPPGSADGVIGGSSGPQ*
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spliced messenger RNA

>Gvermi12210.t1 ID=Gvermi12210.t1|Name=Gvermi12210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at ScGOVlb_3404:3854830..3856581+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGCACATCTGGTGGGTGCGACTGGTTACCGCTCTTTGGGCTCT
TTGGGCTCTTTGTGCATTCAAAGCGCAGGCATCCACAGTACTGATCAGTC
AAGCTTTCAAAGGAAGAGCATTTGGCTCGATTTTGTCAGACGATGTTGCG
AAAAGGATATCTGTTGGAGAAGATGGATCTATATACTTGGCCGGGGTAAC
TACGGCACATGATGATAAAAACGAAGCATGGGGAGATGTACAGTCAGAGG
AACTGACTGGAAAGAGAGATATCTTCATTGCCAAGCTTTCCGTTGCTGGC
GAGGTGCAATGGGTAAAGAGAACGGGTTCAACTCAAGATGACGAACTAAA
CGATTTAAAGCTGACTAGCAATGCATTGTATTTATGCGGATCGACAATGG
GAAACTATGGGAGGCCTGTAAACGGTTCGAGTGACGCGTACATAATGAAA
TTTACGCTGAATGGTGAAAAGGTATGGACTAAGCCTTTCCAGTTTGGGTC
TAAAGGTGAAGATGTCTGCAATGCAATCGATATTGATGAATCTGGCAGGG
TGTACGTTGTTGGATCCACGAACGGACTAATATATGGAACATCAAAACCG
GAGCCGCACAATTTCCATCACTTCGTGGCAAAGTTTGAAGAAGTGTCTGA
CTCCCCATTCGGGTTGCGAACCGTTGTTGGTCGTCAGAGAGGCTCTGTCG
GCAATAGTTCTGCGAACCAGGTTGCTGTGGTTGATGATTTGCTCTACGTC
ATGACCATGTCGAGCAGGAGCCAATCACGGGGTGAAACACATGCTACATA
TTTGAACATTATAGACCGTGAAGCTTTGTTTCTTCATAAGCTACATATGC
TGAAGAGTAGCAACGGAGTGAGTTTTCAAGGTGTAAGAATGGCCACATCG
GCTGCTACAAAGAATGCTTATGTTGTGGGTTTCACTCTTCTCGATGACAT
GCGCCAAAAGTACGAAGTCTTAAAGTTCAATTATTCTCAGAACTATAAGC
AAGGAGGGATAGAATGGAACACTTTGTTGGGCCCTGTCTCTCTGTCTTTC
AAAATGTTACAGTTTGGGGACGTTCAGAATAACAAAGCTCACAAGAACAC
ATCGATTGCTATGGAATATCAGCTGCCTTCAATTGCGGTTGATGAAAGCA
ACAAAAGTGTATATGTTGCGGGGACAGAGGACGGATTCTATCGAACCAAT
AATGCCGGTGATGAAGGCTTGGTGGTCGCCCCTTTCTACAAGCTCAACAG
TACGAGTGGGGAAGTCATAGAACGTTGGCATCGATCTACAAATATTCCCC
ATGACCGTCAGGAATTGACAGATATCGCCATGGATCCAGTACGGACCGTT
GTGTATACAGGTGCTTGGTGGCTGGGTGCGGAAGCAAAGTCTAGCGTTCT
GCTTGGCTCATTTGGGTCCACGATTCATTCATCAATCGCAGACGAATGGA
GCACAAAACCTTCCTTCATGCAAGAGAGCAGCGAAGACACTCATTCCAAT
TCAGGGTCGAAATCGATGGATTCTGGTAGGGCGGGAAGTATTATAATGCT
TACCATCGCATGTGTTGGGGTTATTGCTACGGCACTTTTGTCCATCGGAT
CTCGTTGGAGGAAGTCCAATCCAAAAACCTTTAGATCGGGGGACTCTCAA
GCAGATGAGTTTGACAATATCAGTGTTGGCAAGCACTCCGTGATCAAATT
CCCTCCTGGGTCAGCAGACGGAGTGATTGGTGGAAGCTCAGGTCCGCAGT
AG
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protein sequence of Gvermi12210.t1

>Gvermi12210.t1 ID=Gvermi12210.t1|Name=Gvermi12210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=584bp
MQQHIWWVRLVTALWALWALCAFKAQASTVLISQAFKGRAFGSILSDDVA
KRISVGEDGSIYLAGVTTAHDDKNEAWGDVQSEELTGKRDIFIAKLSVAG
EVQWVKRTGSTQDDELNDLKLTSNALYLCGSTMGNYGRPVNGSSDAYIMK
FTLNGEKVWTKPFQFGSKGEDVCNAIDIDESGRVYVVGSTNGLIYGTSKP
EPHNFHHFVAKFEEVSDSPFGLRTVVGRQRGSVGNSSANQVAVVDDLLYV
MTMSSRSQSRGETHATYLNIIDREALFLHKLHMLKSSNGVSFQGVRMATS
AATKNAYVVGFTLLDDMRQKYEVLKFNYSQNYKQGGIEWNTLLGPVSLSF
KMLQFGDVQNNKAHKNTSIAMEYQLPSIAVDESNKSVYVAGTEDGFYRTN
NAGDEGLVVAPFYKLNSTSGEVIERWHRSTNIPHDRQELTDIAMDPVRTV
VYTGAWWLGAEAKSSVLLGSFGSTIHSSIADEWSTKPSFMQESSEDTHSN
SGSKSMDSGRAGSIIMLTIACVGVIATALLSIGSRWRKSNPKTFRSGDSQ
ADEFDNISVGKHSVIKFPPGSADGVIGGSSGPQ*
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mRNA from alignment at ScGOVlb_3404:3854830..3856581+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12210.t1 ID=Gvermi12210.t1|Name=Gvermi12210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at ScGOVlb_3404:3854830..3856581+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAGCACATCTGGTGGGTGCGACTGGTTACCGCTCTTTGGGCTCT
TTGGGCTCTTTGTGCATTCAAAGCGCAGGCATCCACAGTACTGATCAGTC
AAGCTTTCAAAGGAAGAGCATTTGGCTCGATTTTGTCAGACGATGTTGCG
AAAAGGATATCTGTTGGAGAAGATGGATCTATATACTTGGCCGGGGTAAC
TACGGCACATGATGATAAAAACGAAGCATGGGGAGATGTACAGTCAGAGG
AACTGACTGGAAAGAGAGATATCTTCATTGCCAAGCTTTCCGTTGCTGGC
GAGGTGCAATGGGTAAAGAGAACGGGTTCAACTCAAGATGACGAACTAAA
CGATTTAAAGCTGACTAGCAATGCATTGTATTTATGCGGATCGACAATGG
GAAACTATGGGAGGCCTGTAAACGGTTCGAGTGACGCGTACATAATGAAA
TTTACGCTGAATGGTGAAAAGGTATGGACTAAGCCTTTCCAGTTTGGGTC
TAAAGGTGAAGATGTCTGCAATGCAATCGATATTGATGAATCTGGCAGGG
TGTACGTTGTTGGATCCACGAACGGACTAATATATGGAACATCAAAACCG
GAGCCGCACAATTTCCATCACTTCGTGGCAAAGTTTGAAGAAGTGTCTGA
CTCCCCATTCGGGTTGCGAACCGTTGTTGGTCGTCAGAGAGGCTCTGTCG
GCAATAGTTCTGCGAACCAGGTTGCTGTGGTTGATGATTTGCTCTACGTC
ATGACCATGTCGAGCAGGAGCCAATCACGGGGTGAAACACATGCTACATA
TTTGAACATTATAGACCGTGAAGCTTTGTTTCTTCATAAGCTACATATGC
TGAAGAGTAGCAACGGAGTGAGTTTTCAAGGTGTAAGAATGGCCACATCG
GCTGCTACAAAGAATGCTTATGTTGTGGGTTTCACTCTTCTCGATGACAT
GCGCCAAAAGTACGAAGTCTTAAAGTTCAATTATTCTCAGAACTATAAGC
AAGGAGGGATAGAATGGAACACTTTGTTGGGCCCTGTCTCTCTGTCTTTC
AAAATGTTACAGTTTGGGGACGTTCAGAATAACAAAGCTCACAAGAACAC
ATCGATTGCTATGGAATATCAGCTGCCTTCAATTGCGGTTGATGAAAGCA
ACAAAAGTGTATATGTTGCGGGGACAGAGGACGGATTCTATCGAACCAAT
AATGCCGGTGATGAAGGCTTGGTGGTCGCCCCTTTCTACAAGCTCAACAG
TACGAGTGGGGAAGTCATAGAACGTTGGCATCGATCTACAAATATTCCCC
ATGACCGTCAGGAATTGACAGATATCGCCATGGATCCAGTACGGACCGTT
GTGTATACAGGTGCTTGGTGGCTGGGTGCGGAAGCAAAGTCTAGCGTTCT
GCTTGGCTCATTTGGGTCCACGATTCATTCATCAATCGCAGACGAATGGA
GCACAAAACCTTCCTTCATGCAAGAGAGCAGCGAAGACACTCATTCCAAT
TCAGGGTCGAAATCGATGGATTCTGGTAGGGCGGGAAGTATTATAATGCT
TACCATCGCATGTGTTGGGGTTATTGCTACGGCACTTTTGTCCATCGGAT
CTCGTTGGAGGAAGTCCAATCCAAAAACCTTTAGATCGGGGGACTCTCAA
GCAGATGAGTTTGACAATATCAGTGTTGGCAAGCACTCCGTGATCAAATT
CCCTCCTGGGTCAGCAGACGGAGTGATTGGTGGAAGCTCAGGTCCGCAGT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3854830..3856581+

>Gvermi12210.t1 ID=Gvermi12210.t1|Name=Gvermi12210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1752bp|location=Sequence derived from alignment at ScGOVlb_3404:3854830..3856581+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAGCACATCTGGTGGGTGCGACTGGTTACCGCTCTTTGGGCTCT
TTGGGCTCTTTGTGCATTCAAAGCGCAGGCATCCACAGTACTGATCAGTC
AAGCTTTCAAAGGAAGAGCATTTGGCTCGATTTTGTCAGACGATGTTGCG
AAAAGGATATCTGTTGGAGAAGATGGATCTATATACTTGGCCGGGGTAAC
TACGGCACATGATGATAAAAACGAAGCATGGGGAGATGTACAGTCAGAGG
AACTGACTGGAAAGAGAGATATCTTCATTGCCAAGCTTTCCGTTGCTGGC
GAGGTGCAATGGGTAAAGAGAACGGGTTCAACTCAAGATGACGAACTAAA
CGATTTAAAGCTGACTAGCAATGCATTGTATTTATGCGGATCGACAATGG
GAAACTATGGGAGGCCTGTAAACGGTTCGAGTGACGCGTACATAATGAAA
TTTACGCTGAATGGTGAAAAGGTATGGACTAAGCCTTTCCAGTTTGGGTC
TAAAGGTGAAGATGTCTGCAATGCAATCGATATTGATGAATCTGGCAGGG
TGTACGTTGTTGGATCCACGAACGGACTAATATATGGAACATCAAAACCG
GAGCCGCACAATTTCCATCACTTCGTGGCAAAGTTTGAAGAAGTGTCTGA
CTCCCCATTCGGGTTGCGAACCGTTGTTGGTCGTCAGAGAGGCTCTGTCG
GCAATAGTTCTGCGAACCAGGTTGCTGTGGTTGATGATTTGCTCTACGTC
ATGACCATGTCGAGCAGGAGCCAATCACGGGGTGAAACACATGCTACATA
TTTGAACATTATAGACCGTGAAGCTTTGTTTCTTCATAAGCTACATATGC
TGAAGAGTAGCAACGGAGTGAGTTTTCAAGGTGTAAGAATGGCCACATCG
GCTGCTACAAAGAATGCTTATGTTGTGGGTTTCACTCTTCTCGATGACAT
GCGCCAAAAGTACGAAGTCTTAAAGTTCAATTATTCTCAGAACTATAAGC
AAGGAGGGATAGAATGGAACACTTTGTTGGGCCCTGTCTCTCTGTCTTTC
AAAATGTTACAGTTTGGGGACGTTCAGAATAACAAAGCTCACAAGAACAC
ATCGATTGCTATGGAATATCAGCTGCCTTCAATTGCGGTTGATGAAAGCA
ACAAAAGTGTATATGTTGCGGGGACAGAGGACGGATTCTATCGAACCAAT
AATGCCGGTGATGAAGGCTTGGTGGTCGCCCCTTTCTACAAGCTCAACAG
TACGAGTGGGGAAGTCATAGAACGTTGGCATCGATCTACAAATATTCCCC
ATGACCGTCAGGAATTGACAGATATCGCCATGGATCCAGTACGGACCGTT
GTGTATACAGGTGCTTGGTGGCTGGGTGCGGAAGCAAAGTCTAGCGTTCT
GCTTGGCTCATTTGGGTCCACGATTCATTCATCAATCGCAGACGAATGGA
GCACAAAACCTTCCTTCATGCAAGAGAGCAGCGAAGACACTCATTCCAAT
TCAGGGTCGAAATCGATGGATTCTGGTAGGGCGGGAAGTATTATAATGCT
TACCATCGCATGTGTTGGGGTTATTGCTACGGCACTTTTGTCCATCGGAT
CTCGTTGGAGGAAGTCCAATCCAAAAACCTTTAGATCGGGGGACTCTCAA
GCAGATGAGTTTGACAATATCAGTGTTGGCAAGCACTCCGTGATCAAATT
CCCTCCTGGGTCAGCAGACGGAGTGATTGGTGGAAGCTCAGGTCCGCAGT
AG
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