Gvermi12209.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12209.t1
Unique Name	Gvermi12209.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	346

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3853380..3854417 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29730.Gorai.009G189800.1
Preferred name	CTU1
PFAMs	ATP_bind_3,zn-ribbon_14
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14168
KEGG Pathway	ko04122,map04122
Evalue	5.85e-160
EggNOG OGs	COG0037@1\|root,KOG2840@2759\|Eukaryota,37I2P@33090\|Viridiplantae,3GFWI@35493\|Streptophyta
Description	Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12209	Gvermi12209	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3853380..3854417 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12209.t1.start1	Gvermi12209.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3853380..3853382 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12209.t1.CDS1	Gvermi12209.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3853380..3854417 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12209.t1.exon1	Gvermi12209.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3853380..3854417 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12209.t1.stop1	Gvermi12209.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3854415..3854417 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12209.t1	Gvermi12209.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3853380..3854417 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3853380..3854417+
coding sequence from alignment at ScGOVlb_3404:3853380..3854417+

mRNA sequence

>Gvermi12209.t1 ID=Gvermi12209.t1|Name=Gvermi12209.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=346bp
MVRMCSACKEENASVKRPKTGKAVCKECFFRLFEEEIHETIVSNKLFSPG
EKVAIGASGGKDSTVLAYVLSLLNRRHSYGLDLFLLSVDEGISGYRDDSL
AAVERNKVEYGLPLLVVDYKQLYGWTMDEIVKVIGRKSNCTFCGVFRRQA
LDRGATVLKADKVATGHNADDIAETIFLNFLRGDFPRLSRCVDPVTGRDS
PLPRVKPFKYTYEKEIVMYAYFKKLDYFATECVYSPNAYRGHARQFLKDL
EAERPSVIVDIIHAAEEFRFPSPGDAAVAMPIQRKCERCSYISSQRLCKA
CVLTDSLNNGKAARINRLSAGQVSSEIIPASAVAKAISRVPDETK*

spliced messenger RNA

>Gvermi12209.t1 ID=Gvermi12209.t1|Name=Gvermi12209.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_3404:3853380..3854417+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGAATGTGTTCCGCATGCAAAGAGGAAAATGCTTCTGTAAAGCG
TCCCAAAACCGGAAAGGCAGTTTGCAAAGAATGCTTTTTCAGGCTCTTTG
AAGAAGAGATTCACGAAACCATTGTATCTAACAAGCTCTTTTCTCCTGGT
GAGAAAGTTGCCATTGGTGCATCCGGTGGAAAAGATTCTACAGTTTTGGC
TTATGTACTATCACTGCTAAATCGTCGCCATTCATACGGGCTGGACCTTT
TCTTGCTTAGTGTTGATGAGGGCATATCTGGATATCGCGACGACAGTCTT
GCTGCTGTTGAAAGAAACAAAGTGGAATACGGTCTTCCGCTTCTAGTTGT
TGATTACAAGCAATTATACGGTTGGACGATGGACGAAATTGTAAAGGTAA
TCGGCCGAAAGTCAAACTGTACATTTTGTGGAGTATTTCGTCGTCAAGCA
CTTGACAGAGGCGCCACTGTTCTCAAAGCTGACAAAGTCGCAACAGGTCA
TAATGCTGATGATATAGCCGAGACGATATTTCTCAACTTTTTGCGAGGAG
ATTTTCCGAGGCTATCCAGATGCGTAGATCCCGTCACTGGACGTGATAGC
CCGCTTCCGCGTGTCAAACCGTTCAAATACACTTATGAAAAGGAAATCGT
TATGTATGCGTACTTCAAGAAACTCGACTACTTTGCAACCGAGTGCGTAT
ATTCTCCAAACGCCTATCGTGGACATGCGCGACAGTTTCTAAAAGATTTG
GAGGCAGAGAGACCTTCTGTGATCGTTGATATTATTCACGCCGCCGAGGA
GTTTCGATTTCCATCCCCTGGAGATGCAGCCGTTGCTATGCCCATACAAA
GAAAGTGCGAACGTTGCTCATACATATCAAGCCAGCGTTTGTGCAAGGCG
TGCGTACTAACAGATAGTTTGAATAATGGAAAAGCAGCGCGGATTAATCG
TCTTTCTGCGGGTCAAGTTTCTTCAGAAATTATACCGGCGAGTGCAGTAG
CGAAGGCAATCAGTCGCGTTCCAGATGAGACCAAGTAG

protein sequence of Gvermi12209.t1

>Gvermi12209.t1 ID=Gvermi12209.t1|Name=Gvermi12209.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=346bp
MVRMCSACKEENASVKRPKTGKAVCKECFFRLFEEEIHETIVSNKLFSPG
EKVAIGASGGKDSTVLAYVLSLLNRRHSYGLDLFLLSVDEGISGYRDDSL
AAVERNKVEYGLPLLVVDYKQLYGWTMDEIVKVIGRKSNCTFCGVFRRQA
LDRGATVLKADKVATGHNADDIAETIFLNFLRGDFPRLSRCVDPVTGRDS
PLPRVKPFKYTYEKEIVMYAYFKKLDYFATECVYSPNAYRGHARQFLKDL
EAERPSVIVDIIHAAEEFRFPSPGDAAVAMPIQRKCERCSYISSQRLCKA
CVLTDSLNNGKAARINRLSAGQVSSEIIPASAVAKAISRVPDETK*

mRNA from alignment at ScGOVlb_3404:3853380..3854417+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12209.t1 ID=Gvermi12209.t1|Name=Gvermi12209.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_3404:3853380..3854417+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTCGAATGTGTTCCGCATGCAAAGAGGAAAATGCTTCTGTAAAGCG
TCCCAAAACCGGAAAGGCAGTTTGCAAAGAATGCTTTTTCAGGCTCTTTG
AAGAAGAGATTCACGAAACCATTGTATCTAACAAGCTCTTTTCTCCTGGT
GAGAAAGTTGCCATTGGTGCATCCGGTGGAAAAGATTCTACAGTTTTGGC
TTATGTACTATCACTGCTAAATCGTCGCCATTCATACGGGCTGGACCTTT
TCTTGCTTAGTGTTGATGAGGGCATATCTGGATATCGCGACGACAGTCTT
GCTGCTGTTGAAAGAAACAAAGTGGAATACGGTCTTCCGCTTCTAGTTGT
TGATTACAAGCAATTATACGGTTGGACGATGGACGAAATTGTAAAGGTAA
TCGGCCGAAAGTCAAACTGTACATTTTGTGGAGTATTTCGTCGTCAAGCA
CTTGACAGAGGCGCCACTGTTCTCAAAGCTGACAAAGTCGCAACAGGTCA
TAATGCTGATGATATAGCCGAGACGATATTTCTCAACTTTTTGCGAGGAG
ATTTTCCGAGGCTATCCAGATGCGTAGATCCCGTCACTGGACGTGATAGC
CCGCTTCCGCGTGTCAAACCGTTCAAATACACTTATGAAAAGGAAATCGT
TATGTATGCGTACTTCAAGAAACTCGACTACTTTGCAACCGAGTGCGTAT
ATTCTCCAAACGCCTATCGTGGACATGCGCGACAGTTTCTAAAAGATTTG
GAGGCAGAGAGACCTTCTGTGATCGTTGATATTATTCACGCCGCCGAGGA
GTTTCGATTTCCATCCCCTGGAGATGCAGCCGTTGCTATGCCCATACAAA
GAAAGTGCGAACGTTGCTCATACATATCAAGCCAGCGTTTGTGCAAGGCG
TGCGTACTAACAGATAGTTTGAATAATGGAAAAGCAGCGCGGATTAATCG
TCTTTCTGCGGGTCAAGTTTCTTCAGAAATTATACCGGCGAGTGCAGTAG
CGAAGGCAATCAGTCGCGTTCCAGATGAGACCAAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:3853380..3854417+

>Gvermi12209.t1 ID=Gvermi12209.t1|Name=Gvermi12209.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1038bp|location=Sequence derived from alignment at ScGOVlb_3404:3853380..3854417+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTCGAATGTGTTCCGCATGCAAAGAGGAAAATGCTTCTGTAAAGCG
TCCCAAAACCGGAAAGGCAGTTTGCAAAGAATGCTTTTTCAGGCTCTTTG
AAGAAGAGATTCACGAAACCATTGTATCTAACAAGCTCTTTTCTCCTGGT
GAGAAAGTTGCCATTGGTGCATCCGGTGGAAAAGATTCTACAGTTTTGGC
TTATGTACTATCACTGCTAAATCGTCGCCATTCATACGGGCTGGACCTTT
TCTTGCTTAGTGTTGATGAGGGCATATCTGGATATCGCGACGACAGTCTT
GCTGCTGTTGAAAGAAACAAAGTGGAATACGGTCTTCCGCTTCTAGTTGT
TGATTACAAGCAATTATACGGTTGGACGATGGACGAAATTGTAAAGGTAA
TCGGCCGAAAGTCAAACTGTACATTTTGTGGAGTATTTCGTCGTCAAGCA
CTTGACAGAGGCGCCACTGTTCTCAAAGCTGACAAAGTCGCAACAGGTCA
TAATGCTGATGATATAGCCGAGACGATATTTCTCAACTTTTTGCGAGGAG
ATTTTCCGAGGCTATCCAGATGCGTAGATCCCGTCACTGGACGTGATAGC
CCGCTTCCGCGTGTCAAACCGTTCAAATACACTTATGAAAAGGAAATCGT
TATGTATGCGTACTTCAAGAAACTCGACTACTTTGCAACCGAGTGCGTAT
ATTCTCCAAACGCCTATCGTGGACATGCGCGACAGTTTCTAAAAGATTTG
GAGGCAGAGAGACCTTCTGTGATCGTTGATATTATTCACGCCGCCGAGGA
GTTTCGATTTCCATCCCCTGGAGATGCAGCCGTTGCTATGCCCATACAAA
GAAAGTGCGAACGTTGCTCATACATATCAAGCCAGCGTTTGTGCAAGGCG
TGCGTACTAACAGATAGTTTGAATAATGGAAAAGCAGCGCGGATTAATCG
TCTTTCTGCGGGTCAAGTTTCTTCAGAAATTATACCGGCGAGTGCAGTAG
CGAAGGCAATCAGTCGCGTTCCAGATGAGACCAAGTAG