Gvermi12197.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12197.t1
Unique NameGvermi12197.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3811204..3812463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog864702.OsccyDRAFT_3646
PFAMsMethyltransf_21
Max annot lvl1117|Cyanobacteria
Evalue1.14e-23
EggNOG OGs28NYT@1|root,2ZBVV@2|Bacteria,1G71A@1117|Cyanobacteria,1HF2T@1150|Oscillatoriales
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12197Gvermi12197Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3811204..3812463 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12197.t1.stop1Gvermi12197.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3811204..3811206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12197.t1.CDS1Gvermi12197.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3811204..3812463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12197.t1.exon1Gvermi12197.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3811204..3812463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12197.t1.start1Gvermi12197.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3812461..3812463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12197.t1Gvermi12197.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3811204..3812463 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12197.t1 ID=Gvermi12197.t1|Name=Gvermi12197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp
MPRAANVSFKFPTLPNPLKPPASDKMTLDSMYNPAATGVFQKAIRPSIRR
ERLVAITAFVAGFLVCHLFLTSGSAIESGLFDKQHSSKAYQQPVPQPNAY
QYPPPYAVHPHYVPQYPAPNFVAPPGQQSVATAAQLAQQPQPVSAAPPVS
LAPPAPSVKYCEDTSRNDGPCIFDIGHNNGQDTRNYLNEHPKSRVVAIEA
NPTLVADSKTKFADAIEQGRLQLVGIGITAIDPKKDKTEARPKLKFYVNK
NDKFSSFVESLGCRNWGGDVTPPGDRSFCTVMELETRTCSDLVREYGTPV
YMKIDIEGKDRACLESLETLPESDRPKYASIENVTELDINILLRLGYKKF
KVVNQNLLQEGTTDEEEGHSGPWGEDADDAFVGKRWQTADELKKRLPLKN
KMTLNGVERTAWYDLHGSK*
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spliced messenger RNA

>Gvermi12197.t1 ID=Gvermi12197.t1|Name=Gvermi12197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_3404:3811204..3812463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCGTGCCGCCAACGTATCCTTCAAATTCCCCACTCTGCCCAACCC
ATTGAAGCCCCCCGCTTCGGACAAGATGACTCTGGACAGTATGTACAATC
CAGCAGCCACCGGCGTCTTCCAGAAGGCCATCCGGCCCTCAATCCGTCGT
GAGCGACTGGTGGCCATCACCGCTTTTGTGGCTGGCTTCCTAGTGTGTCA
CCTCTTCCTCACATCTGGCTCTGCCATTGAAAGCGGCCTGTTTGACAAAC
AACATTCATCCAAGGCCTATCAACAACCCGTGCCTCAGCCGAACGCATAC
CAATACCCCCCACCGTACGCCGTGCATCCGCACTACGTTCCGCAGTACCC
TGCGCCCAATTTTGTTGCACCCCCAGGCCAGCAGTCCGTCGCCACCGCTG
CGCAGCTTGCCCAACAGCCCCAACCCGTTTCTGCTGCCCCACCTGTCTCC
CTCGCCCCTCCGGCGCCCTCCGTCAAGTACTGTGAGGACACCTCTCGGAA
CGACGGTCCTTGTATCTTTGACATCGGTCACAACAATGGTCAGGATACAC
GCAACTACCTCAACGAACACCCCAAGTCTCGAGTGGTCGCCATCGAGGCC
AACCCCACGCTGGTCGCCGACTCAAAGACCAAGTTTGCCGACGCCATTGA
GCAGGGCCGATTGCAGCTTGTCGGCATTGGCATCACTGCCATCGATCCGA
AGAAAGATAAGACGGAGGCACGCCCGAAGCTCAAGTTTTATGTCAATAAG
AACGACAAGTTCAGTAGCTTTGTGGAGAGTCTGGGCTGCAGAAACTGGGG
TGGTGATGTCACTCCACCCGGCGATCGCTCGTTCTGCACTGTGATGGAAT
TGGAAACCCGCACGTGCTCGGACTTGGTTCGCGAGTACGGAACGCCTGTC
TACATGAAGATCGATATCGAGGGCAAGGACAGAGCGTGTTTGGAGTCGCT
CGAGACACTCCCCGAATCTGATCGACCCAAGTATGCATCCATCGAGAACG
TGACTGAGCTGGACATCAACATCTTGCTTAGATTGGGCTACAAAAAGTTC
AAAGTCGTGAACCAAAACCTTCTGCAGGAGGGCACCACCGACGAGGAGGA
GGGACACAGTGGTCCTTGGGGCGAGGATGCCGACGACGCGTTCGTCGGTA
AGAGATGGCAGACAGCGGATGAGCTGAAGAAGAGGTTGCCGTTGAAGAAC
AAGATGACCCTTAACGGTGTAGAACGTACTGCTTGGTATGACTTGCACGG
AAGCAAATAA
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protein sequence of Gvermi12197.t1

>Gvermi12197.t1 ID=Gvermi12197.t1|Name=Gvermi12197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=420bp
MPRAANVSFKFPTLPNPLKPPASDKMTLDSMYNPAATGVFQKAIRPSIRR
ERLVAITAFVAGFLVCHLFLTSGSAIESGLFDKQHSSKAYQQPVPQPNAY
QYPPPYAVHPHYVPQYPAPNFVAPPGQQSVATAAQLAQQPQPVSAAPPVS
LAPPAPSVKYCEDTSRNDGPCIFDIGHNNGQDTRNYLNEHPKSRVVAIEA
NPTLVADSKTKFADAIEQGRLQLVGIGITAIDPKKDKTEARPKLKFYVNK
NDKFSSFVESLGCRNWGGDVTPPGDRSFCTVMELETRTCSDLVREYGTPV
YMKIDIEGKDRACLESLETLPESDRPKYASIENVTELDINILLRLGYKKF
KVVNQNLLQEGTTDEEEGHSGPWGEDADDAFVGKRWQTADELKKRLPLKN
KMTLNGVERTAWYDLHGSK*
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mRNA from alignment at ScGOVlb_3404:3811204..3812463-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12197.t1 ID=Gvermi12197.t1|Name=Gvermi12197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_3404:3811204..3812463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCGTGCCGCCAACGTATCCTTCAAATTCCCCACTCTGCCCAACCC
ATTGAAGCCCCCCGCTTCGGACAAGATGACTCTGGACAGTATGTACAATC
CAGCAGCCACCGGCGTCTTCCAGAAGGCCATCCGGCCCTCAATCCGTCGT
GAGCGACTGGTGGCCATCACCGCTTTTGTGGCTGGCTTCCTAGTGTGTCA
CCTCTTCCTCACATCTGGCTCTGCCATTGAAAGCGGCCTGTTTGACAAAC
AACATTCATCCAAGGCCTATCAACAACCCGTGCCTCAGCCGAACGCATAC
CAATACCCCCCACCGTACGCCGTGCATCCGCACTACGTTCCGCAGTACCC
TGCGCCCAATTTTGTTGCACCCCCAGGCCAGCAGTCCGTCGCCACCGCTG
CGCAGCTTGCCCAACAGCCCCAACCCGTTTCTGCTGCCCCACCTGTCTCC
CTCGCCCCTCCGGCGCCCTCCGTCAAGTACTGTGAGGACACCTCTCGGAA
CGACGGTCCTTGTATCTTTGACATCGGTCACAACAATGGTCAGGATACAC
GCAACTACCTCAACGAACACCCCAAGTCTCGAGTGGTCGCCATCGAGGCC
AACCCCACGCTGGTCGCCGACTCAAAGACCAAGTTTGCCGACGCCATTGA
GCAGGGCCGATTGCAGCTTGTCGGCATTGGCATCACTGCCATCGATCCGA
AGAAAGATAAGACGGAGGCACGCCCGAAGCTCAAGTTTTATGTCAATAAG
AACGACAAGTTCAGTAGCTTTGTGGAGAGTCTGGGCTGCAGAAACTGGGG
TGGTGATGTCACTCCACCCGGCGATCGCTCGTTCTGCACTGTGATGGAAT
TGGAAACCCGCACGTGCTCGGACTTGGTTCGCGAGTACGGAACGCCTGTC
TACATGAAGATCGATATCGAGGGCAAGGACAGAGCGTGTTTGGAGTCGCT
CGAGACACTCCCCGAATCTGATCGACCCAAGTATGCATCCATCGAGAACG
TGACTGAGCTGGACATCAACATCTTGCTTAGATTGGGCTACAAAAAGTTC
AAAGTCGTGAACCAAAACCTTCTGCAGGAGGGCACCACCGACGAGGAGGA
GGGACACAGTGGTCCTTGGGGCGAGGATGCCGACGACGCGTTCGTCGGTA
AGAGATGGCAGACAGCGGATGAGCTGAAGAAGAGGTTGCCGTTGAAGAAC
AAGATGACCCTTAACGGTGTAGAACGTACTGCTTGGTATGACTTGCACGG
AAGCAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3811204..3812463-

>Gvermi12197.t1 ID=Gvermi12197.t1|Name=Gvermi12197.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1260bp|location=Sequence derived from alignment at ScGOVlb_3404:3811204..3812463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCGTGCCGCCAACGTATCCTTCAAATTCCCCACTCTGCCCAACCC
ATTGAAGCCCCCCGCTTCGGACAAGATGACTCTGGACAGTATGTACAATC
CAGCAGCCACCGGCGTCTTCCAGAAGGCCATCCGGCCCTCAATCCGTCGT
GAGCGACTGGTGGCCATCACCGCTTTTGTGGCTGGCTTCCTAGTGTGTCA
CCTCTTCCTCACATCTGGCTCTGCCATTGAAAGCGGCCTGTTTGACAAAC
AACATTCATCCAAGGCCTATCAACAACCCGTGCCTCAGCCGAACGCATAC
CAATACCCCCCACCGTACGCCGTGCATCCGCACTACGTTCCGCAGTACCC
TGCGCCCAATTTTGTTGCACCCCCAGGCCAGCAGTCCGTCGCCACCGCTG
CGCAGCTTGCCCAACAGCCCCAACCCGTTTCTGCTGCCCCACCTGTCTCC
CTCGCCCCTCCGGCGCCCTCCGTCAAGTACTGTGAGGACACCTCTCGGAA
CGACGGTCCTTGTATCTTTGACATCGGTCACAACAATGGTCAGGATACAC
GCAACTACCTCAACGAACACCCCAAGTCTCGAGTGGTCGCCATCGAGGCC
AACCCCACGCTGGTCGCCGACTCAAAGACCAAGTTTGCCGACGCCATTGA
GCAGGGCCGATTGCAGCTTGTCGGCATTGGCATCACTGCCATCGATCCGA
AGAAAGATAAGACGGAGGCACGCCCGAAGCTCAAGTTTTATGTCAATAAG
AACGACAAGTTCAGTAGCTTTGTGGAGAGTCTGGGCTGCAGAAACTGGGG
TGGTGATGTCACTCCACCCGGCGATCGCTCGTTCTGCACTGTGATGGAAT
TGGAAACCCGCACGTGCTCGGACTTGGTTCGCGAGTACGGAACGCCTGTC
TACATGAAGATCGATATCGAGGGCAAGGACAGAGCGTGTTTGGAGTCGCT
CGAGACACTCCCCGAATCTGATCGACCCAAGTATGCATCCATCGAGAACG
TGACTGAGCTGGACATCAACATCTTGCTTAGATTGGGCTACAAAAAGTTC
AAAGTCGTGAACCAAAACCTTCTGCAGGAGGGCACCACCGACGAGGAGGA
GGGACACAGTGGTCCTTGGGGCGAGGATGCCGACGACGCGTTCGTCGGTA
AGAGATGGCAGACAGCGGATGAGCTGAAGAAGAGGTTGCCGTTGAAGAAC
AAGATGACCCTTAACGGTGTAGAACGTACTGCTTGGTATGACTTGCACGG
AAGCAAATAA
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