Gvermi12194.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12194.t1
Unique NameGvermi12194.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3803307..3803626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72664.XP_006413806.1
PFAMsCmc1
Max annot lvl35493|Streptophyta
KEGG koko:K18172
Evalue3.12e-16
EggNOG OGs2CZWX@1|root,2SBZE@2759|Eukaryota,388GU@33090|Viridiplantae,3GX8J@35493|Streptophyta,3I10M@3699|Brassicales
DescriptionCOX assembly mitochondrial protein
COG categoryO
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12194Gvermi12194Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3803307..3803626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12194.t1Gvermi12194.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3803307..3803626 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12194.t1.stop1Gvermi12194.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3803307..3803309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12194.t1.CDS1Gvermi12194.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3803307..3803513 -
Gvermi12194.t1.CDS2Gvermi12194.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3803591..3803626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12194.t1.exon1Gvermi12194.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3803307..3803513 -
Gvermi12194.t1.exon2Gvermi12194.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3803591..3803626 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12194.t1.intron1Gvermi12194.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3803514..3803590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12194.t1.start1Gvermi12194.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3803624..3803626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12194.t1 ID=Gvermi12194.t1|Name=Gvermi12194.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=81bp
MHPTLAPHLHPMCQEAILNLKQCHAHHRFAKFLGACNNAKAALDKCLSQE
YLVKRELNAAKAKKEKDRLRQTLEDEKHFQ*
back to top

spliced messenger RNA

>Gvermi12194.t1 ID=Gvermi12194.t1|Name=Gvermi12194.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=243bp|location=Sequence derived from alignment at ScGOVlb_3404:3803307..3803626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCAACCCTCGCCCCACACCTGCATCCCATGTGTCAAGAAGCAAT
CCTGAATCTTAAACAATGCCACGCACATCATCGTTTTGCCAAATTTCTCG
GCGCTTGCAACAATGCAAAGGCGGCTCTTGATAAATGCTTATCTCAAGAG
TATCTCGTCAAGAGGGAACTCAACGCCGCCAAGGCAAAGAAGGAGAAAGA
CCGCCTTCGCCAAACGTTGGAAGACGAAAAGCACTTTCAGTGA
back to top

protein sequence of Gvermi12194.t1

>Gvermi12194.t1 ID=Gvermi12194.t1|Name=Gvermi12194.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=81bp
MHPTLAPHLHPMCQEAILNLKQCHAHHRFAKFLGACNNAKAALDKCLSQE
YLVKRELNAAKAKKEKDRLRQTLEDEKHFQ*
back to top

mRNA from alignment at ScGOVlb_3404:3803307..3803626-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12194.t1 ID=Gvermi12194.t1|Name=Gvermi12194.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=320bp|location=Sequence derived from alignment at ScGOVlb_3404:3803307..3803626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCCAACCCTCGCCCCACACCTGCATCCCATGGTACGCTCAAGCAC
CCAACATATATAATTTTTCAGTAGAATGTCGTCCAAAAGAGCGCCTCTGA
CGTGTGAAAAAAGTGTCAAGAAGCAATCCTGAATCTTAAACAATGCCACG
CACATCATCGTTTTGCCAAATTTCTCGGCGCTTGCAACAATGCAAAGGCG
GCTCTTGATAAATGCTTATCTCAAGAGTATCTCGTCAAGAGGGAACTCAA
CGCCGCCAAGGCAAAGAAGGAGAAAGACCGCCTTCGCCAAACGTTGGAAG
ACGAAAAGCACTTTCAGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3803307..3803626-

>Gvermi12194.t1 ID=Gvermi12194.t1|Name=Gvermi12194.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=243bp|location=Sequence derived from alignment at ScGOVlb_3404:3803307..3803626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCCAACCCTCGCCCCACACCTGCATCCCATGTGTCAAGAAGCAAT
CCTGAATCTTAAACAATGCCACGCACATCATCGTTTTGCCAAATTTCTCG
GCGCTTGCAACAATGCAAAGGCGGCTCTTGATAAATGCTTATCTCAAGAG
TATCTCGTCAAGAGGGAACTCAACGCCGCCAAGGCAAAGAAGGAGAAAGA
CCGCCTTCGCCAAACGTTGGAAGACGAAAAGCACTTTCAGTGA
back to top