Gvermi12191.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12191.t1
Unique NameGvermi12191.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3794975..3795619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR010069-PA
PFAMsBAG,ubiquitin
Max annot lvl33208|Metazoa
KEGG koko:K09555
KEGG Pathwayko04141,map04141
Evalue3.6e-14
EggNOG OGs2C0R8@1|root,2TB75@2759|Eukaryota,396B6@33154|Opisthokonta,3CAQ0@33208|Metazoa,3DRXD@33213|Bilateria,423A8@6656|Arthropoda
DescriptionBAG domain
COG categoryO
BRITEko00000,ko00001,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12191Gvermi12191Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3794975..3795619 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12191.t1.stop1Gvermi12191.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3794975..3794977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12191.t1.CDS1Gvermi12191.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3794975..3795619 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12191.t1.exon1Gvermi12191.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3794975..3795619 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12191.t1.start1Gvermi12191.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3795617..3795619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12191.t1Gvermi12191.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3794975..3795619 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12191.t1 ID=Gvermi12191.t1|Name=Gvermi12191.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=215bp
MGDSSNMESQRLTLLFDKKTYKVPIRKTTQDLQTDIERLTGIPPEEQTII
VKGKKTVLSSLKADLKGIGITGQSKAMLIRSTRSGGPSISMSPALRSVRS
CSAKVAKLRNDLFAVQESMKKHLQGFLDAPKTREALERDRKGLRVVEEEC
MRILEQLDSLDTGNGRDVECVRTERKNAVSQLQSVLRDIDTISEDIEVFQ
VDKHGEIKARRGKS*
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spliced messenger RNA

>Gvermi12191.t1 ID=Gvermi12191.t1|Name=Gvermi12191.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_3404:3794975..3795619- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACTCGTCTAATATGGAATCTCAGCGATTGACTCTCTTGTTTGA
CAAGAAAACTTACAAGGTTCCTATCAGAAAAACGACCCAAGACTTGCAAA
CTGATATCGAGAGGCTTACTGGTATTCCCCCCGAGGAACAAACAATCATC
GTCAAAGGAAAGAAGACCGTTCTCTCGAGCTTGAAAGCAGACTTGAAGGG
TATTGGCATAACTGGACAAAGCAAGGCGATGTTAATTCGCAGTACTCGGT
CCGGAGGCCCGAGCATTTCCATGTCTCCAGCTCTTCGTTCGGTCCGATCA
TGTTCAGCAAAGGTTGCCAAACTCCGTAATGATCTTTTTGCGGTTCAGGA
ATCTATGAAAAAACATTTGCAGGGGTTTCTCGATGCTCCAAAGACAAGGG
AAGCACTTGAAAGAGATCGAAAAGGGCTTCGAGTAGTTGAGGAAGAATGT
ATGCGCATACTTGAACAGCTTGACAGCCTCGATACTGGAAATGGACGCGA
TGTGGAATGTGTGCGAACTGAGAGGAAAAATGCGGTAAGCCAGTTACAGT
CTGTATTACGTGACATCGACACTATTTCGGAAGACATAGAGGTCTTTCAG
GTCGATAAGCATGGAGAAATCAAAGCTCGACGAGGGAAATCTTAG
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protein sequence of Gvermi12191.t1

>Gvermi12191.t1 ID=Gvermi12191.t1|Name=Gvermi12191.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=215bp
MGDSSNMESQRLTLLFDKKTYKVPIRKTTQDLQTDIERLTGIPPEEQTII
VKGKKTVLSSLKADLKGIGITGQSKAMLIRSTRSGGPSISMSPALRSVRS
CSAKVAKLRNDLFAVQESMKKHLQGFLDAPKTREALERDRKGLRVVEEEC
MRILEQLDSLDTGNGRDVECVRTERKNAVSQLQSVLRDIDTISEDIEVFQ
VDKHGEIKARRGKS*
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mRNA from alignment at ScGOVlb_3404:3794975..3795619-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12191.t1 ID=Gvermi12191.t1|Name=Gvermi12191.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_3404:3794975..3795619- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGACTCGTCTAATATGGAATCTCAGCGATTGACTCTCTTGTTTGA
CAAGAAAACTTACAAGGTTCCTATCAGAAAAACGACCCAAGACTTGCAAA
CTGATATCGAGAGGCTTACTGGTATTCCCCCCGAGGAACAAACAATCATC
GTCAAAGGAAAGAAGACCGTTCTCTCGAGCTTGAAAGCAGACTTGAAGGG
TATTGGCATAACTGGACAAAGCAAGGCGATGTTAATTCGCAGTACTCGGT
CCGGAGGCCCGAGCATTTCCATGTCTCCAGCTCTTCGTTCGGTCCGATCA
TGTTCAGCAAAGGTTGCCAAACTCCGTAATGATCTTTTTGCGGTTCAGGA
ATCTATGAAAAAACATTTGCAGGGGTTTCTCGATGCTCCAAAGACAAGGG
AAGCACTTGAAAGAGATCGAAAAGGGCTTCGAGTAGTTGAGGAAGAATGT
ATGCGCATACTTGAACAGCTTGACAGCCTCGATACTGGAAATGGACGCGA
TGTGGAATGTGTGCGAACTGAGAGGAAAAATGCGGTAAGCCAGTTACAGT
CTGTATTACGTGACATCGACACTATTTCGGAAGACATAGAGGTCTTTCAG
GTCGATAAGCATGGAGAAATCAAAGCTCGACGAGGGAAATCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3794975..3795619-

>Gvermi12191.t1 ID=Gvermi12191.t1|Name=Gvermi12191.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=645bp|location=Sequence derived from alignment at ScGOVlb_3404:3794975..3795619- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGACTCGTCTAATATGGAATCTCAGCGATTGACTCTCTTGTTTGA
CAAGAAAACTTACAAGGTTCCTATCAGAAAAACGACCCAAGACTTGCAAA
CTGATATCGAGAGGCTTACTGGTATTCCCCCCGAGGAACAAACAATCATC
GTCAAAGGAAAGAAGACCGTTCTCTCGAGCTTGAAAGCAGACTTGAAGGG
TATTGGCATAACTGGACAAAGCAAGGCGATGTTAATTCGCAGTACTCGGT
CCGGAGGCCCGAGCATTTCCATGTCTCCAGCTCTTCGTTCGGTCCGATCA
TGTTCAGCAAAGGTTGCCAAACTCCGTAATGATCTTTTTGCGGTTCAGGA
ATCTATGAAAAAACATTTGCAGGGGTTTCTCGATGCTCCAAAGACAAGGG
AAGCACTTGAAAGAGATCGAAAAGGGCTTCGAGTAGTTGAGGAAGAATGT
ATGCGCATACTTGAACAGCTTGACAGCCTCGATACTGGAAATGGACGCGA
TGTGGAATGTGTGCGAACTGAGAGGAAAAATGCGGTAAGCCAGTTACAGT
CTGTATTACGTGACATCGACACTATTTCGGAAGACATAGAGGTCTTTCAG
GTCGATAAGCATGGAGAAATCAAAGCTCGACGAGGGAAATCTTAG
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