Gvermi12188.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12188.t1
Unique NameGvermi12188.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3785082..3786590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12188Gvermi12188Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3785082..3786590 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12188.t1.start1Gvermi12188.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3785082..3785084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12188.t1.CDS1Gvermi12188.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3785082..3786590 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12188.t1.exon1Gvermi12188.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3785082..3786590 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12188.t1.stop1Gvermi12188.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3786588..3786590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12188.t1Gvermi12188.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3785082..3786590 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12188.t1 ID=Gvermi12188.t1|Name=Gvermi12188.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=503bp
MSANLSFPTALLLTDAPEPPWGFINITGENPGKYVFGSNTFKPDLQLLKA
KWYERKIYPERWDEVILGYVSVLLITIFTEIVISFLKSVLPYICSCVNPK
QTNKTYYWREVADGVHTLLSYRFLNLWKRYRSEQKFRSGKVVMTIIALGI
FFLDGYIIILTQPNQYRSDQYDYNLIGSHPIGTDIGLGKFLRRNARERPC
VTPVFYNSNPTRNFSLSTCHTLNIREAHYEVNDTVDSVRIGSWFHEGGSD
HLITFGNASIEVKARALIYGAEGGTWRLLFPVLHKNHTAITYYLHQLVFQ
NILQYGCDENSNPKSCEELFVRHRIEAKLVSKEIKLWIPGEKGIKRRRQV
RGLETTLVVRIEQPWSTVFRSIGPLMTTELIEEVAGPGSYAHIATEEERN
GIPGLIYLERRNVSVILLLLCFPSAVVLLSCIKIGWRKAEHSQGSGKSDL
EVFSSGDMTPMTSSKNVDDKKDVTSANSPELQSVVCSQDSNSHGTRSDSS
EN*
back to top

spliced messenger RNA

>Gvermi12188.t1 ID=Gvermi12188.t1|Name=Gvermi12188.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at ScGOVlb_3404:3785082..3786590+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCAAACCTCTCGTTCCCTACTGCTCTTCTTCTCACGGATGCACC
CGAGCCTCCTTGGGGATTTATAAACATCACTGGTGAAAATCCAGGAAAAT
ATGTTTTCGGGTCGAACACCTTCAAACCTGATCTACAACTACTGAAAGCC
AAATGGTATGAGAGAAAAATATATCCCGAGCGATGGGATGAAGTGATACT
TGGATACGTCTCAGTTTTATTGATCACGATCTTTACCGAGATTGTGATAT
CCTTTCTCAAATCAGTACTTCCATACATATGTTCATGCGTGAATCCAAAA
CAAACGAACAAGACATACTACTGGAGAGAAGTTGCCGATGGCGTACATAC
GTTGCTGAGCTATCGTTTTCTTAACTTGTGGAAACGATATAGGTCTGAAC
AAAAGTTTCGATCCGGGAAAGTTGTTATGACTATAATTGCTCTTGGTATT
TTCTTTCTAGATGGCTATATAATAATCCTTACTCAACCAAATCAGTACCG
GAGCGATCAATATGATTATAACTTGATAGGAAGTCATCCCATTGGCACCG
ACATTGGCTTGGGAAAGTTCTTGCGCAGGAATGCAAGAGAGCGTCCATGT
GTAACACCTGTGTTCTATAACTCCAATCCCACTCGAAATTTCTCCCTCAG
CACATGCCATACTCTCAATATCAGAGAAGCTCATTACGAAGTCAATGATA
CGGTGGACTCTGTGAGAATAGGATCATGGTTTCATGAGGGCGGTAGCGAT
CACCTTATAACGTTTGGTAATGCCAGCATTGAAGTTAAAGCGCGTGCGCT
TATTTACGGGGCAGAAGGTGGGACTTGGAGACTTCTTTTTCCCGTTTTGC
ACAAGAATCACACTGCTATCACATATTACCTACATCAGCTGGTCTTTCAA
AATATCTTACAATATGGTTGTGACGAGAATTCAAATCCGAAAAGTTGTGA
AGAACTGTTCGTTAGGCATCGAATTGAAGCAAAATTGGTGTCCAAAGAGA
TCAAACTCTGGATACCGGGAGAAAAGGGCATTAAACGGAGGAGGCAAGTC
CGAGGCTTAGAGACAACCTTGGTAGTGAGAATAGAACAGCCATGGTCAAC
TGTGTTTCGGAGCATTGGACCTTTGATGACAACGGAGCTTATTGAAGAAG
TTGCAGGCCCAGGTTCTTATGCCCACATAGCCACTGAGGAAGAAAGAAAT
GGAATCCCAGGGCTCATATATCTAGAACGAAGAAATGTCAGTGTTATTTT
GCTGCTTCTGTGCTTTCCTTCCGCTGTAGTGCTTCTGTCATGCATTAAAA
TTGGCTGGAGAAAAGCCGAGCACTCCCAAGGTTCCGGAAAAAGTGACCTT
GAGGTGTTCTCTAGCGGAGATATGACGCCCATGACCTCATCTAAAAATGT
TGATGATAAGAAAGATGTGACAAGTGCAAATTCTCCCGAACTTCAATCTG
TGGTGTGCTCTCAAGATAGCAACTCTCATGGAACAAGATCGGATTCGTCA
GAGAATTGA
back to top

protein sequence of Gvermi12188.t1

>Gvermi12188.t1 ID=Gvermi12188.t1|Name=Gvermi12188.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=503bp
MSANLSFPTALLLTDAPEPPWGFINITGENPGKYVFGSNTFKPDLQLLKA
KWYERKIYPERWDEVILGYVSVLLITIFTEIVISFLKSVLPYICSCVNPK
QTNKTYYWREVADGVHTLLSYRFLNLWKRYRSEQKFRSGKVVMTIIALGI
FFLDGYIIILTQPNQYRSDQYDYNLIGSHPIGTDIGLGKFLRRNARERPC
VTPVFYNSNPTRNFSLSTCHTLNIREAHYEVNDTVDSVRIGSWFHEGGSD
HLITFGNASIEVKARALIYGAEGGTWRLLFPVLHKNHTAITYYLHQLVFQ
NILQYGCDENSNPKSCEELFVRHRIEAKLVSKEIKLWIPGEKGIKRRRQV
RGLETTLVVRIEQPWSTVFRSIGPLMTTELIEEVAGPGSYAHIATEEERN
GIPGLIYLERRNVSVILLLLCFPSAVVLLSCIKIGWRKAEHSQGSGKSDL
EVFSSGDMTPMTSSKNVDDKKDVTSANSPELQSVVCSQDSNSHGTRSDSS
EN*
back to top

mRNA from alignment at ScGOVlb_3404:3785082..3786590+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12188.t1 ID=Gvermi12188.t1|Name=Gvermi12188.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at ScGOVlb_3404:3785082..3786590+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGCAAACCTCTCGTTCCCTACTGCTCTTCTTCTCACGGATGCACC
CGAGCCTCCTTGGGGATTTATAAACATCACTGGTGAAAATCCAGGAAAAT
ATGTTTTCGGGTCGAACACCTTCAAACCTGATCTACAACTACTGAAAGCC
AAATGGTATGAGAGAAAAATATATCCCGAGCGATGGGATGAAGTGATACT
TGGATACGTCTCAGTTTTATTGATCACGATCTTTACCGAGATTGTGATAT
CCTTTCTCAAATCAGTACTTCCATACATATGTTCATGCGTGAATCCAAAA
CAAACGAACAAGACATACTACTGGAGAGAAGTTGCCGATGGCGTACATAC
GTTGCTGAGCTATCGTTTTCTTAACTTGTGGAAACGATATAGGTCTGAAC
AAAAGTTTCGATCCGGGAAAGTTGTTATGACTATAATTGCTCTTGGTATT
TTCTTTCTAGATGGCTATATAATAATCCTTACTCAACCAAATCAGTACCG
GAGCGATCAATATGATTATAACTTGATAGGAAGTCATCCCATTGGCACCG
ACATTGGCTTGGGAAAGTTCTTGCGCAGGAATGCAAGAGAGCGTCCATGT
GTAACACCTGTGTTCTATAACTCCAATCCCACTCGAAATTTCTCCCTCAG
CACATGCCATACTCTCAATATCAGAGAAGCTCATTACGAAGTCAATGATA
CGGTGGACTCTGTGAGAATAGGATCATGGTTTCATGAGGGCGGTAGCGAT
CACCTTATAACGTTTGGTAATGCCAGCATTGAAGTTAAAGCGCGTGCGCT
TATTTACGGGGCAGAAGGTGGGACTTGGAGACTTCTTTTTCCCGTTTTGC
ACAAGAATCACACTGCTATCACATATTACCTACATCAGCTGGTCTTTCAA
AATATCTTACAATATGGTTGTGACGAGAATTCAAATCCGAAAAGTTGTGA
AGAACTGTTCGTTAGGCATCGAATTGAAGCAAAATTGGTGTCCAAAGAGA
TCAAACTCTGGATACCGGGAGAAAAGGGCATTAAACGGAGGAGGCAAGTC
CGAGGCTTAGAGACAACCTTGGTAGTGAGAATAGAACAGCCATGGTCAAC
TGTGTTTCGGAGCATTGGACCTTTGATGACAACGGAGCTTATTGAAGAAG
TTGCAGGCCCAGGTTCTTATGCCCACATAGCCACTGAGGAAGAAAGAAAT
GGAATCCCAGGGCTCATATATCTAGAACGAAGAAATGTCAGTGTTATTTT
GCTGCTTCTGTGCTTTCCTTCCGCTGTAGTGCTTCTGTCATGCATTAAAA
TTGGCTGGAGAAAAGCCGAGCACTCCCAAGGTTCCGGAAAAAGTGACCTT
GAGGTGTTCTCTAGCGGAGATATGACGCCCATGACCTCATCTAAAAATGT
TGATGATAAGAAAGATGTGACAAGTGCAAATTCTCCCGAACTTCAATCTG
TGGTGTGCTCTCAAGATAGCAACTCTCATGGAACAAGATCGGATTCGTCA
GAGAATTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3785082..3786590+

>Gvermi12188.t1 ID=Gvermi12188.t1|Name=Gvermi12188.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1509bp|location=Sequence derived from alignment at ScGOVlb_3404:3785082..3786590+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGCAAACCTCTCGTTCCCTACTGCTCTTCTTCTCACGGATGCACC
CGAGCCTCCTTGGGGATTTATAAACATCACTGGTGAAAATCCAGGAAAAT
ATGTTTTCGGGTCGAACACCTTCAAACCTGATCTACAACTACTGAAAGCC
AAATGGTATGAGAGAAAAATATATCCCGAGCGATGGGATGAAGTGATACT
TGGATACGTCTCAGTTTTATTGATCACGATCTTTACCGAGATTGTGATAT
CCTTTCTCAAATCAGTACTTCCATACATATGTTCATGCGTGAATCCAAAA
CAAACGAACAAGACATACTACTGGAGAGAAGTTGCCGATGGCGTACATAC
GTTGCTGAGCTATCGTTTTCTTAACTTGTGGAAACGATATAGGTCTGAAC
AAAAGTTTCGATCCGGGAAAGTTGTTATGACTATAATTGCTCTTGGTATT
TTCTTTCTAGATGGCTATATAATAATCCTTACTCAACCAAATCAGTACCG
GAGCGATCAATATGATTATAACTTGATAGGAAGTCATCCCATTGGCACCG
ACATTGGCTTGGGAAAGTTCTTGCGCAGGAATGCAAGAGAGCGTCCATGT
GTAACACCTGTGTTCTATAACTCCAATCCCACTCGAAATTTCTCCCTCAG
CACATGCCATACTCTCAATATCAGAGAAGCTCATTACGAAGTCAATGATA
CGGTGGACTCTGTGAGAATAGGATCATGGTTTCATGAGGGCGGTAGCGAT
CACCTTATAACGTTTGGTAATGCCAGCATTGAAGTTAAAGCGCGTGCGCT
TATTTACGGGGCAGAAGGTGGGACTTGGAGACTTCTTTTTCCCGTTTTGC
ACAAGAATCACACTGCTATCACATATTACCTACATCAGCTGGTCTTTCAA
AATATCTTACAATATGGTTGTGACGAGAATTCAAATCCGAAAAGTTGTGA
AGAACTGTTCGTTAGGCATCGAATTGAAGCAAAATTGGTGTCCAAAGAGA
TCAAACTCTGGATACCGGGAGAAAAGGGCATTAAACGGAGGAGGCAAGTC
CGAGGCTTAGAGACAACCTTGGTAGTGAGAATAGAACAGCCATGGTCAAC
TGTGTTTCGGAGCATTGGACCTTTGATGACAACGGAGCTTATTGAAGAAG
TTGCAGGCCCAGGTTCTTATGCCCACATAGCCACTGAGGAAGAAAGAAAT
GGAATCCCAGGGCTCATATATCTAGAACGAAGAAATGTCAGTGTTATTTT
GCTGCTTCTGTGCTTTCCTTCCGCTGTAGTGCTTCTGTCATGCATTAAAA
TTGGCTGGAGAAAAGCCGAGCACTCCCAAGGTTCCGGAAAAAGTGACCTT
GAGGTGTTCTCTAGCGGAGATATGACGCCCATGACCTCATCTAAAAATGT
TGATGATAAGAAAGATGTGACAAGTGCAAATTCTCCCGAACTTCAATCTG
TGGTGTGCTCTCAAGATAGCAACTCTCATGGAACAAGATCGGATTCGTCA
GAGAATTGA
back to top