Gvermi12187.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12187.t1
Unique NameGvermi12187.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3783127..3783810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001742793.1
PFAMsGLTP
Max annot lvl33154|Opisthokonta
KEGG koko:K08051
Evalue1.52e-22
EggNOG OGsKOG3221@1|root,KOG3221@2759|Eukaryota,392MM@33154|Opisthokonta
Descriptionglycolipid transporter activity
COG categoryG
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12187Gvermi12187Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3783127..3783810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12187.t1.stop1Gvermi12187.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3783127..3783129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12187.t1.CDS1Gvermi12187.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3783127..3783810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12187.t1.exon1Gvermi12187.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3783127..3783810 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12187.t1.start1Gvermi12187.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3783808..3783810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12187.t1Gvermi12187.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3783127..3783810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12187.t1 ID=Gvermi12187.t1|Name=Gvermi12187.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=228bp
MSSSTAPQRDFGFFLQIVEAFKTSAASAPNGDFKNMNVSKFVEAMTMFLR
IFDAFANPFFSDFVKKDVQGNIDKLRAGAENTKCSTIESVVDAECADPKL
KKLIVKESGEGSETATVGLLWMKRTMQFVIGLLRYLVQDSSISLSSASRK
SYSETLRYCHNFVTRGVFDTGLRFAPTRESFYKNLAGGAQDISIVDAPMK
EFLEVFDPQLNGIVAMYKAKNLETYIK*
back to top

spliced messenger RNA

>Gvermi12187.t1 ID=Gvermi12187.t1|Name=Gvermi12187.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp|location=Sequence derived from alignment at ScGOVlb_3404:3783127..3783810- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGTCAACAGCTCCTCAACGCGATTTTGGATTTTTCCTGCAGAT
TGTGGAAGCCTTCAAAACATCAGCTGCTAGCGCTCCTAATGGGGACTTCA
AAAATATGAATGTGAGTAAATTTGTGGAAGCCATGACCATGTTCCTCCGC
ATTTTTGACGCGTTTGCAAACCCCTTTTTCTCAGACTTTGTCAAGAAGGA
CGTACAAGGTAACATTGATAAATTACGTGCAGGTGCAGAGAACACGAAGT
GCTCTACCATTGAAAGTGTTGTCGATGCGGAGTGTGCGGATCCGAAGCTG
AAAAAGTTGATTGTGAAAGAAAGCGGTGAAGGCTCCGAGACCGCTACCGT
AGGTTTGTTGTGGATGAAGCGCACGATGCAGTTTGTGATTGGTTTGTTGC
GTTATCTCGTTCAAGACTCGTCTATCTCGCTGTCGAGTGCAAGTCGAAAG
TCGTACTCGGAGACATTGCGCTATTGCCACAACTTCGTCACCCGTGGGGT
GTTCGACACGGGCTTGAGATTCGCACCGACCCGCGAATCGTTCTACAAGA
ACCTCGCCGGTGGGGCACAGGACATATCGATTGTTGACGCACCGATGAAG
GAGTTCCTTGAAGTATTTGACCCTCAACTAAACGGGATTGTAGCCATGTA
CAAAGCAAAAAACCTCGAAACGTACATAAAGTAA
back to top

protein sequence of Gvermi12187.t1

>Gvermi12187.t1 ID=Gvermi12187.t1|Name=Gvermi12187.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=228bp
MSSSTAPQRDFGFFLQIVEAFKTSAASAPNGDFKNMNVSKFVEAMTMFLR
IFDAFANPFFSDFVKKDVQGNIDKLRAGAENTKCSTIESVVDAECADPKL
KKLIVKESGEGSETATVGLLWMKRTMQFVIGLLRYLVQDSSISLSSASRK
SYSETLRYCHNFVTRGVFDTGLRFAPTRESFYKNLAGGAQDISIVDAPMK
EFLEVFDPQLNGIVAMYKAKNLETYIK*
back to top

mRNA from alignment at ScGOVlb_3404:3783127..3783810-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12187.t1 ID=Gvermi12187.t1|Name=Gvermi12187.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp|location=Sequence derived from alignment at ScGOVlb_3404:3783127..3783810- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCGTCAACAGCTCCTCAACGCGATTTTGGATTTTTCCTGCAGAT
TGTGGAAGCCTTCAAAACATCAGCTGCTAGCGCTCCTAATGGGGACTTCA
AAAATATGAATGTGAGTAAATTTGTGGAAGCCATGACCATGTTCCTCCGC
ATTTTTGACGCGTTTGCAAACCCCTTTTTCTCAGACTTTGTCAAGAAGGA
CGTACAAGGTAACATTGATAAATTACGTGCAGGTGCAGAGAACACGAAGT
GCTCTACCATTGAAAGTGTTGTCGATGCGGAGTGTGCGGATCCGAAGCTG
AAAAAGTTGATTGTGAAAGAAAGCGGTGAAGGCTCCGAGACCGCTACCGT
AGGTTTGTTGTGGATGAAGCGCACGATGCAGTTTGTGATTGGTTTGTTGC
GTTATCTCGTTCAAGACTCGTCTATCTCGCTGTCGAGTGCAAGTCGAAAG
TCGTACTCGGAGACATTGCGCTATTGCCACAACTTCGTCACCCGTGGGGT
GTTCGACACGGGCTTGAGATTCGCACCGACCCGCGAATCGTTCTACAAGA
ACCTCGCCGGTGGGGCACAGGACATATCGATTGTTGACGCACCGATGAAG
GAGTTCCTTGAAGTATTTGACCCTCAACTAAACGGGATTGTAGCCATGTA
CAAAGCAAAAAACCTCGAAACGTACATAAAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3783127..3783810-

>Gvermi12187.t1 ID=Gvermi12187.t1|Name=Gvermi12187.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=684bp|location=Sequence derived from alignment at ScGOVlb_3404:3783127..3783810- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCGTCAACAGCTCCTCAACGCGATTTTGGATTTTTCCTGCAGAT
TGTGGAAGCCTTCAAAACATCAGCTGCTAGCGCTCCTAATGGGGACTTCA
AAAATATGAATGTGAGTAAATTTGTGGAAGCCATGACCATGTTCCTCCGC
ATTTTTGACGCGTTTGCAAACCCCTTTTTCTCAGACTTTGTCAAGAAGGA
CGTACAAGGTAACATTGATAAATTACGTGCAGGTGCAGAGAACACGAAGT
GCTCTACCATTGAAAGTGTTGTCGATGCGGAGTGTGCGGATCCGAAGCTG
AAAAAGTTGATTGTGAAAGAAAGCGGTGAAGGCTCCGAGACCGCTACCGT
AGGTTTGTTGTGGATGAAGCGCACGATGCAGTTTGTGATTGGTTTGTTGC
GTTATCTCGTTCAAGACTCGTCTATCTCGCTGTCGAGTGCAAGTCGAAAG
TCGTACTCGGAGACATTGCGCTATTGCCACAACTTCGTCACCCGTGGGGT
GTTCGACACGGGCTTGAGATTCGCACCGACCCGCGAATCGTTCTACAAGA
ACCTCGCCGGTGGGGCACAGGACATATCGATTGTTGACGCACCGATGAAG
GAGTTCCTTGAAGTATTTGACCCTCAACTAAACGGGATTGTAGCCATGTA
CAAAGCAAAAAACCTCGAAACGTACATAAAGTAA
back to top