Gvermi12185.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12185.t1
Unique Name	Gvermi12185.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3778307..3779257 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706752.1
PFAMs	ARID,RBB1NT,Tudor-knot
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07874,ko:K11763
KEGG Pathway	ko05134,map05134
Evalue	5.92e-11
EggNOG OGs	KOG2744@1\|root,KOG2744@2759\|Eukaryota
Description	DNA binding
COG category	K
BRITE	ko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12185	Gvermi12185	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3778307..3779257 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12185.t1.start1	Gvermi12185.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3778307..3778309 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12185.t1.CDS1	Gvermi12185.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3778307..3779257 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12185.t1.exon1	Gvermi12185.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3778307..3779257 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12185.t1.stop1	Gvermi12185.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3779255..3779257 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12185.t1	Gvermi12185.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3778307..3779257 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3778307..3779257+
coding sequence from alignment at ScGOVlb_3404:3778307..3779257+

mRNA sequence

>Gvermi12185.t1 ID=Gvermi12185.t1|Name=Gvermi12185.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=317bp
MSDSPNFLYDSNPSDEERTQSTAAEQSGANNDDCVELAPGDYTGKLPVDI
MNMPVVPCPLIKLGNRVIICGRYSDDQPCVKAANNLGVIMLSKTFSGHLP
PHTTCSEDRFLADWKAFHHEIYGLVPKLPTVSGAKLDLFLFAQQILLLGG
IDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEERLLQIVS
TPVAHPHALVALKETVACNNEEVQVQSPRRKVRRLDAPHPYTTSLQRAHN
LECDTRIPDSEPPFLPPILREGFETIPRLPPFKMLTSGLALRSGTATKRK
QGATSYLIPKQFDDAS*

spliced messenger RNA

>Gvermi12185.t1 ID=Gvermi12185.t1|Name=Gvermi12185.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=951bp|location=Sequence derived from alignment at ScGOVlb_3404:3778307..3779257+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGATTCGCCTAACTTTCTGTACGACTCAAACCCTTCCGATGAAGA
ACGCACGCAGTCCACGGCTGCCGAGCAATCCGGCGCCAATAACGACGACT
GCGTCGAGCTTGCTCCGGGTGACTACACCGGGAAGCTCCCGGTGGATATC
ATGAACATGCCAGTGGTGCCCTGCCCGCTCATCAAGCTCGGCAACCGCGT
CATCATCTGCGGAAGATATTCGGATGACCAACCATGTGTCAAGGCAGCAA
ACAATCTCGGCGTCATCATGCTTTCTAAAACTTTCTCCGGCCATCTACCT
CCGCATACGACGTGCAGCGAGGATCGCTTCCTTGCGGACTGGAAAGCCTT
TCATCACGAAATTTACGGACTTGTGCCCAAGCTGCCCACCGTCTCGGGCG
CGAAACTGGACCTGTTTCTGTTCGCGCAGCAGATTCTGTTGCTAGGAGGC
ATTGACACCGTAGTCGAAAAACGAGGCTTTGTGGTGCTTGCTAAACAGCT
GCGGCTTTCAAAACCTTGCACCAGCGCTGCTACCGTGCTCCGTCGCGCAC
ACCAGTCGCTAATGCATCAGTACGAAGAAAGACTGTTGCAAATAGTGAGC
ACACCTGTCGCGCACCCCCACGCGCTAGTGGCACTAAAAGAAACGGTCGC
TTGCAACAATGAGGAAGTACAAGTTCAGAGCCCGCGTAGGAAAGTGAGAC
GGTTGGATGCGCCACATCCTTACACAACATCTCTACAAAGGGCGCACAAC
TTGGAATGCGACACAAGAATACCCGACAGCGAACCGCCGTTTTTACCTCC
TATTCTACGAGAGGGCTTTGAAACAATACCGAGGCTTCCCCCCTTCAAAA
TGCTGACTTCGGGGTTGGCGCTGCGTTCTGGCACGGCGACGAAACGGAAA
CAAGGAGCAACGTCTTATCTGATCCCGAAACAATTCGACGACGCGAGCTG
A

protein sequence of Gvermi12185.t1

>Gvermi12185.t1 ID=Gvermi12185.t1|Name=Gvermi12185.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=317bp
MSDSPNFLYDSNPSDEERTQSTAAEQSGANNDDCVELAPGDYTGKLPVDI
MNMPVVPCPLIKLGNRVIICGRYSDDQPCVKAANNLGVIMLSKTFSGHLP
PHTTCSEDRFLADWKAFHHEIYGLVPKLPTVSGAKLDLFLFAQQILLLGG
IDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEERLLQIVS
TPVAHPHALVALKETVACNNEEVQVQSPRRKVRRLDAPHPYTTSLQRAHN
LECDTRIPDSEPPFLPPILREGFETIPRLPPFKMLTSGLALRSGTATKRK
QGATSYLIPKQFDDAS*

mRNA from alignment at ScGOVlb_3404:3778307..3779257+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12185.t1 ID=Gvermi12185.t1|Name=Gvermi12185.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=951bp|location=Sequence derived from alignment at ScGOVlb_3404:3778307..3779257+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGATTCGCCTAACTTTCTGTACGACTCAAACCCTTCCGATGAAGA
ACGCACGCAGTCCACGGCTGCCGAGCAATCCGGCGCCAATAACGACGACT
GCGTCGAGCTTGCTCCGGGTGACTACACCGGGAAGCTCCCGGTGGATATC
ATGAACATGCCAGTGGTGCCCTGCCCGCTCATCAAGCTCGGCAACCGCGT
CATCATCTGCGGAAGATATTCGGATGACCAACCATGTGTCAAGGCAGCAA
ACAATCTCGGCGTCATCATGCTTTCTAAAACTTTCTCCGGCCATCTACCT
CCGCATACGACGTGCAGCGAGGATCGCTTCCTTGCGGACTGGAAAGCCTT
TCATCACGAAATTTACGGACTTGTGCCCAAGCTGCCCACCGTCTCGGGCG
CGAAACTGGACCTGTTTCTGTTCGCGCAGCAGATTCTGTTGCTAGGAGGC
ATTGACACCGTAGTCGAAAAACGAGGCTTTGTGGTGCTTGCTAAACAGCT
GCGGCTTTCAAAACCTTGCACCAGCGCTGCTACCGTGCTCCGTCGCGCAC
ACCAGTCGCTAATGCATCAGTACGAAGAAAGACTGTTGCAAATAGTGAGC
ACACCTGTCGCGCACCCCCACGCGCTAGTGGCACTAAAAGAAACGGTCGC
TTGCAACAATGAGGAAGTACAAGTTCAGAGCCCGCGTAGGAAAGTGAGAC
GGTTGGATGCGCCACATCCTTACACAACATCTCTACAAAGGGCGCACAAC
TTGGAATGCGACACAAGAATACCCGACAGCGAACCGCCGTTTTTACCTCC
TATTCTACGAGAGGGCTTTGAAACAATACCGAGGCTTCCCCCCTTCAAAA
TGCTGACTTCGGGGTTGGCGCTGCGTTCTGGCACGGCGACGAAACGGAAA
CAAGGAGCAACGTCTTATCTGATCCCGAAACAATTCGACGACGCGAGCTG
A

Coding sequence (CDS) from alignment at ScGOVlb_3404:3778307..3779257+

>Gvermi12185.t1 ID=Gvermi12185.t1|Name=Gvermi12185.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=951bp|location=Sequence derived from alignment at ScGOVlb_3404:3778307..3779257+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGATTCGCCTAACTTTCTGTACGACTCAAACCCTTCCGATGAAGA
ACGCACGCAGTCCACGGCTGCCGAGCAATCCGGCGCCAATAACGACGACT
GCGTCGAGCTTGCTCCGGGTGACTACACCGGGAAGCTCCCGGTGGATATC
ATGAACATGCCAGTGGTGCCCTGCCCGCTCATCAAGCTCGGCAACCGCGT
CATCATCTGCGGAAGATATTCGGATGACCAACCATGTGTCAAGGCAGCAA
ACAATCTCGGCGTCATCATGCTTTCTAAAACTTTCTCCGGCCATCTACCT
CCGCATACGACGTGCAGCGAGGATCGCTTCCTTGCGGACTGGAAAGCCTT
TCATCACGAAATTTACGGACTTGTGCCCAAGCTGCCCACCGTCTCGGGCG
CGAAACTGGACCTGTTTCTGTTCGCGCAGCAGATTCTGTTGCTAGGAGGC
ATTGACACCGTAGTCGAAAAACGAGGCTTTGTGGTGCTTGCTAAACAGCT
GCGGCTTTCAAAACCTTGCACCAGCGCTGCTACCGTGCTCCGTCGCGCAC
ACCAGTCGCTAATGCATCAGTACGAAGAAAGACTGTTGCAAATAGTGAGC
ACACCTGTCGCGCACCCCCACGCGCTAGTGGCACTAAAAGAAACGGTCGC
TTGCAACAATGAGGAAGTACAAGTTCAGAGCCCGCGTAGGAAAGTGAGAC
GGTTGGATGCGCCACATCCTTACACAACATCTCTACAAAGGGCGCACAAC
TTGGAATGCGACACAAGAATACCCGACAGCGAACCGCCGTTTTTACCTCC
TATTCTACGAGAGGGCTTTGAAACAATACCGAGGCTTCCCCCCTTCAAAA
TGCTGACTTCGGGGTTGGCGCTGCGTTCTGGCACGGCGACGAAACGGAAA
CAAGGAGCAACGTCTTATCTGATCCCGAAACAATTCGACGACGCGAGCTG
A