Gvermi12183.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12183.t1
Unique NameGvermi12183.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3771036..3772128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704706.1
Preferred nameMSRA
PFAMsPMSR
Max annot lvl2759|Eukaryota
KEGG koko:K07304
GOsGO:0000096,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0007568,GO:0008113,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0015629,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0019752,GO:0030091,GO:0031974,GO:0031981,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901605
Evalue5.69e-85
EggNOG OGsCOG0225@1|root,KOG1635@2759|Eukaryota
EC1.8.4.11
Descriptionpeptide-methionine (S)-S-oxide reductase activity
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12183Gvermi12183Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3771036..3772128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12183.t1Gvermi12183.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3771036..3772128 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12183.t1.start1Gvermi12183.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3771036..3771038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12183.t1.CDS1Gvermi12183.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3771036..3771337 +
Gvermi12183.t1.CDS2Gvermi12183.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3771400..3771529 +
Gvermi12183.t1.CDS3Gvermi12183.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3771607..3771727 +
Gvermi12183.t1.CDS4Gvermi12183.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3771819..3771968 +
Gvermi12183.t1.CDS5Gvermi12183.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3772049..3772128 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12183.t1.exon1Gvermi12183.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3771036..3771337 +
Gvermi12183.t1.exon2Gvermi12183.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3771400..3771529 +
Gvermi12183.t1.exon3Gvermi12183.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3771607..3771727 +
Gvermi12183.t1.exon4Gvermi12183.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3771819..3771968 +
Gvermi12183.t1.exon5Gvermi12183.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3772049..3772128 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12183.t1.intron1Gvermi12183.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3771338..3771399 +
Gvermi12183.t1.intron2Gvermi12183.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3771530..3771606 +
Gvermi12183.t1.intron3Gvermi12183.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3771728..3771818 +
Gvermi12183.t1.intron4Gvermi12183.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3771969..3772048 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12183.t1.stop1Gvermi12183.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3772126..3772128 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12183.t1 ID=Gvermi12183.t1|Name=Gvermi12183.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=261bp
LRPKAIPFAKMPTTFVPPLPVALRPLRHNTSPVRPGKRFVQAAMGPFVWF
QNLMRPATTTKSMTATPIAPPARHVVLGTPIAPPPGGWKPPLHEAMFGLG
CFWGAERKFWQMEGIYTTSVGYAGGETEFPTYRQVCTGRTNHAEVVNVVY
DTSKTSYEDLLNVFWAAHDPTQKNRQGNDVGTQYRSVIYYYNDEQKKAAE
ETRNHFNAILKEAGRNGVATEIQPAPQYFYAEEYHQQYLHKNPMGYCGLG
GTGLYTPRKN*
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spliced messenger RNA

>Gvermi12183.t1 ID=Gvermi12183.t1|Name=Gvermi12183.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=783bp|location=Sequence derived from alignment at ScGOVlb_3404:3771036..3772128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCGTCCAAAAGCCATCCCGTTTGCCAAGATGCCGACCACGTTCGTTCC
GCCGTTGCCAGTCGCCCTAAGACCTCTTCGTCACAACACCAGTCCTGTGC
GCCCAGGAAAACGCTTTGTGCAAGCTGCAATGGGTCCCTTTGTATGGTTT
CAGAATTTGATGCGACCAGCAACAACGACAAAGTCAATGACAGCTACTCC
AATTGCGCCTCCTGCACGGCATGTCGTGCTGGGAACTCCCATCGCCCCGC
CGCCCGGCGGATGGAAGCCTCCTCTACATGAGGCCATGTTTGGTCTAGGA
TGCTTCTGGGGTGCCGAAAGGAAATTCTGGCAGATGGAAGGTATATATAC
CACCAGTGTTGGCTATGCGGGTGGAGAAACAGAGTTTCCCACTTACAGAC
AGGTGTGTACAGGTAGGACTAACCACGCTGAGGTTGTCAATGTCGTGTAC
GACACCTCAAAAACTTCATATGAGGATTTGTTGAATGTGTTCTGGGCAGC
TCATGACCCAACTCAGAAGAACAGACAAGGAAACGATGTCGGCACACAAT
ATCGTTCTGTAATCTACTACTACAATGATGAGCAGAAAAAGGCAGCTGAA
GAGACTCGAAACCACTTCAACGCCATCCTAAAGGAAGCTGGCCGAAATGG
CGTGGCCACCGAAATTCAACCTGCCCCGCAGTACTTCTACGCTGAGGAAT
ATCATCAGCAGTACTTGCACAAAAATCCGATGGGCTACTGCGGACTTGGA
GGAACTGGGCTGTACACGCCTCGAAAAAACTGA
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protein sequence of Gvermi12183.t1

>Gvermi12183.t1 ID=Gvermi12183.t1|Name=Gvermi12183.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=261bp
LRPKAIPFAKMPTTFVPPLPVALRPLRHNTSPVRPGKRFVQAAMGPFVWF
QNLMRPATTTKSMTATPIAPPARHVVLGTPIAPPPGGWKPPLHEAMFGLG
CFWGAERKFWQMEGIYTTSVGYAGGETEFPTYRQVCTGRTNHAEVVNVVY
DTSKTSYEDLLNVFWAAHDPTQKNRQGNDVGTQYRSVIYYYNDEQKKAAE
ETRNHFNAILKEAGRNGVATEIQPAPQYFYAEEYHQQYLHKNPMGYCGLG
GTGLYTPRKN*
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mRNA from alignment at ScGOVlb_3404:3771036..3772128+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12183.t1 ID=Gvermi12183.t1|Name=Gvermi12183.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1093bp|location=Sequence derived from alignment at ScGOVlb_3404:3771036..3772128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCGTCCAAAAGCCATCCCGTTTGCCAAGATGCCGACCACGTTCGTTCC
GCCGTTGCCAGTCGCCCTAAGACCTCTTCGTCACAACACCAGTCCTGTGC
GCCCAGGAAAACGCTTTGTGCAAGCTGCAATGGGTCCCTTTGTATGGTTT
CAGAATTTGATGCGACCAGCAACAACGACAAAGTCAATGACAGCTACTCC
AATTGCGCCTCCTGCACGGCATGTCGTGCTGGGAACTCCCATCGCCCCGC
CGCCCGGCGGATGGAAGCCTCCTCTACATGAGGCCATGTTTGGTCTAGGA
TGGTATGTTGGGATATTTGAAAGTTTATTGCGACAATATGTAAACTAACA
AGACTTCTCGAAAGCTTCTGGGGTGCCGAAAGGAAATTCTGGCAGATGGA
AGGTATATATACCACCAGTGTTGGCTATGCGGGTGGAGAAACAGAGTTTC
CCACTTACAGACAGGTGTGTACAGGTAGGACTAACCACGCTGAGGTAAGT
GCAAGTTTATTGAACACCTATACGATTACTATGCTCTGTGAATTCTCCAA
AGTTGCTAATCATTTGAACAGGTTGTCAATGTCGTGTACGACACCTCAAA
AACTTCATATGAGGATTTGTTGAATGTGTTCTGGGCAGCTCATGACCCAA
CTCAGAAGAACAGACAAGGAAACGATGTCGGCACACAATATCGTACGTTG
CCTTCCTTTGCCACATGTAGTGAGTGTATACGGAGTGATCTTAAAGTAGA
CTCGCTAACCACTTTCACCTTTCGTTACTTTAGGTTCTGTAATCTACTAC
TACAATGATGAGCAGAAAAAGGCAGCTGAAGAGACTCGAAACCACTTCAA
CGCCATCCTAAAGGAAGCTGGCCGAAATGGCGTGGCCACCGAAATTCAAC
CTGCCCCGCAGTACTTCTACGCTGAGGAATATCGTAAGTTGACCCAATCA
CTTTTCCACATTTTTCGCCTATCTGACATACGAAAATATATTCCTCGATG
TTTCCCACCATAGATCAGCAGTACTTGCACAAAAATCCGATGGGCTACTG
CGGACTTGGAGGAACTGGGCTGTACACGCCTCGAAAAAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3771036..3772128+

>Gvermi12183.t1 ID=Gvermi12183.t1|Name=Gvermi12183.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=783bp|location=Sequence derived from alignment at ScGOVlb_3404:3771036..3772128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCGTCCAAAAGCCATCCCGTTTGCCAAGATGCCGACCACGTTCGTTCC
GCCGTTGCCAGTCGCCCTAAGACCTCTTCGTCACAACACCAGTCCTGTGC
GCCCAGGAAAACGCTTTGTGCAAGCTGCAATGGGTCCCTTTGTATGGTTT
CAGAATTTGATGCGACCAGCAACAACGACAAAGTCAATGACAGCTACTCC
AATTGCGCCTCCTGCACGGCATGTCGTGCTGGGAACTCCCATCGCCCCGC
CGCCCGGCGGATGGAAGCCTCCTCTACATGAGGCCATGTTTGGTCTAGGA
TGCTTCTGGGGTGCCGAAAGGAAATTCTGGCAGATGGAAGGTATATATAC
CACCAGTGTTGGCTATGCGGGTGGAGAAACAGAGTTTCCCACTTACAGAC
AGGTGTGTACAGGTAGGACTAACCACGCTGAGGTTGTCAATGTCGTGTAC
GACACCTCAAAAACTTCATATGAGGATTTGTTGAATGTGTTCTGGGCAGC
TCATGACCCAACTCAGAAGAACAGACAAGGAAACGATGTCGGCACACAAT
ATCGTTCTGTAATCTACTACTACAATGATGAGCAGAAAAAGGCAGCTGAA
GAGACTCGAAACCACTTCAACGCCATCCTAAAGGAAGCTGGCCGAAATGG
CGTGGCCACCGAAATTCAACCTGCCCCGCAGTACTTCTACGCTGAGGAAT
ATCATCAGCAGTACTTGCACAAAAATCCGATGGGCTACTGCGGACTTGGA
GGAACTGGGCTGTACACGCCTCGAAAAAACTGA
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