Gvermi12178.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12178.t1
Unique NameGvermi12178.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3682794..3684276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118163.Ple7327_1681
PFAMsGlyco_transf_28,UDPGT
Max annot lvl1117|Cyanobacteria
Evalue4.97e-93
EggNOG OGsCOG1819@1|root,COG1819@2|Bacteria,1G1XQ@1117|Cyanobacteria,3VKX2@52604|Pleurocapsales
DescriptionUDP-glucoronosyl and UDP-glucosyl transferase
COG categoryCG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12178Gvermi12178Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3682794..3684276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12178.t1Gvermi12178.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3682794..3684276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12178.t1.start1Gvermi12178.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3682794..3682796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12178.t1.CDS1Gvermi12178.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3682794..3684010 +
Gvermi12178.t1.CDS2Gvermi12178.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3684273..3684276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12178.t1.exon1Gvermi12178.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3682794..3684010 +
Gvermi12178.t1.exon2Gvermi12178.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3684273..3684276 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12178.t1.intron1Gvermi12178.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3684011..3684272 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12178.t1.stop1Gvermi12178.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3684274..3684276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12178.t1 ID=Gvermi12178.t1|Name=Gvermi12178.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=407bp
MTEIALELRRRGNQIVFIGIPDIRPKLKDFDFELLHVGKAEFPLGYVSTS
MKMLGELQGYQALRFSSDHIAENGRVFLRDAPDIVRAAKLDLLVIEQTVV
SMMTVADAQNIPYITVCVSLISNSDPLVPPVFSHRIPSDGSLSKIHTFIE
HKMEKILTHNIFAEIHRKRREWNLPPIHDPTTTHSPYATVVQLPKSIDFP
RKHLPLNYHYVGRFCDPSGTEPLCRNVSFPFEKLDGRPVLYASLGTIVND
IKDLYKKVVESCKSLNAQLVVSLGNPQAFVKDDFGDAIVVPFAPQEKLVS
MASVVITHGGNNTVTMALSYGVPMVVIPVANDQPGVAARVVASGLGVCIN
AKKMNLGNIRSSISNVMTDSKYRERAEKVRREIEEAGGVRKTADIAEMVA
RTRQPV*
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spliced messenger RNA

>Gvermi12178.t1 ID=Gvermi12178.t1|Name=Gvermi12178.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3682794..3684276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAAATCGCTCTCGAACTTCGACGTCGCGGAAATCAAATCGTCTT
CATTGGCATTCCGGACATTCGCCCAAAGTTAAAAGATTTTGACTTCGAGC
TGCTTCATGTAGGCAAAGCTGAATTTCCCTTGGGATATGTGTCAACGTCA
ATGAAAATGTTGGGAGAACTCCAAGGTTACCAGGCCTTGCGTTTTTCCTC
TGATCATATCGCGGAAAACGGAAGGGTATTCCTCAGAGATGCGCCAGATA
TTGTGCGAGCGGCCAAATTGGATCTTTTGGTCATTGAACAAACCGTTGTT
TCCATGATGACTGTCGCGGATGCTCAAAATATTCCTTACATCACTGTTTG
TGTTTCACTTATCTCTAACTCTGATCCTCTCGTGCCTCCGGTATTTTCAC
ATCGCATTCCATCTGATGGGTCTTTATCCAAGATTCACACATTCATCGAA
CACAAGATGGAAAAAATCTTAACACATAACATATTTGCAGAGATCCATCG
CAAGCGCAGGGAATGGAACTTGCCTCCAATTCATGACCCTACCACCACTC
ATTCGCCTTACGCGACTGTGGTTCAGCTCCCCAAATCGATTGATTTTCCG
AGGAAACACTTGCCTTTGAACTACCACTATGTTGGGCGATTTTGTGATCC
ATCAGGTACGGAGCCGTTGTGCAGGAATGTTTCATTTCCATTCGAAAAGC
TTGACGGAAGACCTGTACTATATGCCTCCTTGGGCACCATTGTTAATGAT
ATCAAAGATCTGTATAAGAAAGTGGTTGAATCATGCAAGAGCTTAAACGC
ACAGCTTGTTGTTTCACTTGGGAACCCGCAGGCTTTTGTTAAAGATGACT
TTGGGGACGCGATCGTGGTTCCGTTTGCACCTCAGGAAAAGCTTGTTTCA
ATGGCTTCGGTGGTTATCACACATGGTGGAAATAATACTGTTACAATGGC
GCTATCCTACGGGGTGCCTATGGTCGTTATTCCGGTGGCTAATGATCAGC
CTGGCGTTGCGGCACGCGTGGTAGCTAGTGGCCTGGGTGTCTGCATCAAC
GCGAAGAAAATGAACCTTGGAAATATTCGCTCTTCCATAAGTAACGTCAT
GACGGACAGTAAATATCGTGAACGAGCAGAAAAGGTGCGCAGGGAAATAG
AAGAAGCGGGAGGGGTGAGAAAAACTGCCGATATTGCTGAGATGGTTGCA
AGGACCAGGCAGCCTGTATAG
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protein sequence of Gvermi12178.t1

>Gvermi12178.t1 ID=Gvermi12178.t1|Name=Gvermi12178.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MTEIALELRRRGNQIVFIGIPDIRPKLKDFDFELLHVGKAEFPLGYVSTS
MKMLGELQGYQALRFSSDHIAENGRVFLRDAPDIVRAAKLDLLVIEQTVV
SMMTVADAQNIPYITVCVSLISNSDPLVPPVFSHRIPSDGSLSKIHTFIE
HKMEKILTHNIFAEIHRKRREWNLPPIHDPTTTHSPYATVVQLPKSIDFP
RKHLPLNYHYVGRFCDPSGTEPLCRNVSFPFEKLDGRPVLYASLGTIVND
IKDLYKKVVESCKSLNAQLVVSLGNPQAFVKDDFGDAIVVPFAPQEKLVS
MASVVITHGGNNTVTMALSYGVPMVVIPVANDQPGVAARVVASGLGVCIN
AKKMNLGNIRSSISNVMTDSKYRERAEKVRREIEEAGGVRKTADIAEMVA
RTRQPV*
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mRNA from alignment at ScGOVlb_3404:3682794..3684276+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12178.t1 ID=Gvermi12178.t1|Name=Gvermi12178.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1483bp|location=Sequence derived from alignment at ScGOVlb_3404:3682794..3684276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGAAATCGCTCTCGAACTTCGACGTCGCGGAAATCAAATCGTCTT
CATTGGCATTCCGGACATTCGCCCAAAGTTAAAAGATTTTGACTTCGAGC
TGCTTCATGTAGGCAAAGCTGAATTTCCCTTGGGATATGTGTCAACGTCA
ATGAAAATGTTGGGAGAACTCCAAGGTTACCAGGCCTTGCGTTTTTCCTC
TGATCATATCGCGGAAAACGGAAGGGTATTCCTCAGAGATGCGCCAGATA
TTGTGCGAGCGGCCAAATTGGATCTTTTGGTCATTGAACAAACCGTTGTT
TCCATGATGACTGTCGCGGATGCTCAAAATATTCCTTACATCACTGTTTG
TGTTTCACTTATCTCTAACTCTGATCCTCTCGTGCCTCCGGTATTTTCAC
ATCGCATTCCATCTGATGGGTCTTTATCCAAGATTCACACATTCATCGAA
CACAAGATGGAAAAAATCTTAACACATAACATATTTGCAGAGATCCATCG
CAAGCGCAGGGAATGGAACTTGCCTCCAATTCATGACCCTACCACCACTC
ATTCGCCTTACGCGACTGTGGTTCAGCTCCCCAAATCGATTGATTTTCCG
AGGAAACACTTGCCTTTGAACTACCACTATGTTGGGCGATTTTGTGATCC
ATCAGGTACGGAGCCGTTGTGCAGGAATGTTTCATTTCCATTCGAAAAGC
TTGACGGAAGACCTGTACTATATGCCTCCTTGGGCACCATTGTTAATGAT
ATCAAAGATCTGTATAAGAAAGTGGTTGAATCATGCAAGAGCTTAAACGC
ACAGCTTGTTGTTTCACTTGGGAACCCGCAGGCTTTTGTTAAAGATGACT
TTGGGGACGCGATCGTGGTTCCGTTTGCACCTCAGGAAAAGCTTGTTTCA
ATGGCTTCGGTGGTTATCACACATGGTGGAAATAATACTGTTACAATGGC
GCTATCCTACGGGGTGCCTATGGTCGTTATTCCGGTGGCTAATGATCAGC
CTGGCGTTGCGGCACGCGTGGTAGCTAGTGGCCTGGGTGTCTGCATCAAC
GCGAAGAAAATGAACCTTGGAAATATTCGCTCTTCCATAAGTAACGTCAT
GACGGACAGTAAATATCGTGAACGAGCAGAAAAGGTGCGCAGGGAAATAG
AAGAAGCGGGAGGGGTGAGAAAAACTGCCGATATTGCTGAGATGGTTGCA
AGGACCAGGCAGCCTGTGTTGTCTGTGTGAGTGTACGACGTCACAAGAAC
TGAAGAGACTCTTATTCGATTTCGTACCCTGGGAGTATTTCATACGACTT
AATACTAGGTGGATCTCTCAAGAAGGTTACGGCATGTCTTGTTCCTCGGA
ATGGTCGCTATGCACCTTTTCCTCTAGCAAACTAGAGACGTAGTCATCTT
ACATAGCACCACGTTAGAACGAACACCAGCATGTTTCCTGTTCGGTTTGA
TTATTAGTGCAACTGTGGCATGTTTTGAGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3682794..3684276+

>Gvermi12178.t1 ID=Gvermi12178.t1|Name=Gvermi12178.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3682794..3684276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGAAATCGCTCTCGAACTTCGACGTCGCGGAAATCAAATCGTCTT
CATTGGCATTCCGGACATTCGCCCAAAGTTAAAAGATTTTGACTTCGAGC
TGCTTCATGTAGGCAAAGCTGAATTTCCCTTGGGATATGTGTCAACGTCA
ATGAAAATGTTGGGAGAACTCCAAGGTTACCAGGCCTTGCGTTTTTCCTC
TGATCATATCGCGGAAAACGGAAGGGTATTCCTCAGAGATGCGCCAGATA
TTGTGCGAGCGGCCAAATTGGATCTTTTGGTCATTGAACAAACCGTTGTT
TCCATGATGACTGTCGCGGATGCTCAAAATATTCCTTACATCACTGTTTG
TGTTTCACTTATCTCTAACTCTGATCCTCTCGTGCCTCCGGTATTTTCAC
ATCGCATTCCATCTGATGGGTCTTTATCCAAGATTCACACATTCATCGAA
CACAAGATGGAAAAAATCTTAACACATAACATATTTGCAGAGATCCATCG
CAAGCGCAGGGAATGGAACTTGCCTCCAATTCATGACCCTACCACCACTC
ATTCGCCTTACGCGACTGTGGTTCAGCTCCCCAAATCGATTGATTTTCCG
AGGAAACACTTGCCTTTGAACTACCACTATGTTGGGCGATTTTGTGATCC
ATCAGGTACGGAGCCGTTGTGCAGGAATGTTTCATTTCCATTCGAAAAGC
TTGACGGAAGACCTGTACTATATGCCTCCTTGGGCACCATTGTTAATGAT
ATCAAAGATCTGTATAAGAAAGTGGTTGAATCATGCAAGAGCTTAAACGC
ACAGCTTGTTGTTTCACTTGGGAACCCGCAGGCTTTTGTTAAAGATGACT
TTGGGGACGCGATCGTGGTTCCGTTTGCACCTCAGGAAAAGCTTGTTTCA
ATGGCTTCGGTGGTTATCACACATGGTGGAAATAATACTGTTACAATGGC
GCTATCCTACGGGGTGCCTATGGTCGTTATTCCGGTGGCTAATGATCAGC
CTGGCGTTGCGGCACGCGTGGTAGCTAGTGGCCTGGGTGTCTGCATCAAC
GCGAAGAAAATGAACCTTGGAAATATTCGCTCTTCCATAAGTAACGTCAT
GACGGACAGTAAATATCGTGAACGAGCAGAAAAGGTGCGCAGGGAAATAG
AAGAAGCGGGAGGGGTGAGAAAAACTGCCGATATTGCTGAGATGGTTGCA
AGGACCAGGCAGCCTGTATAG
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