Gvermi12175.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12175.t1
Unique Name	Gvermi12175.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3669122..3669949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	330214.NIDE2127
PFAMs	adh_short
Max annot lvl	2\|Bacteria
KEGG ko	ko:K07124
Evalue	4.13e-46
EggNOG OGs	COG0300@1\|root,COG0300@2\|Bacteria
Description	Belongs to the short-chain dehydrogenases reductases (SDR) family
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12175	Gvermi12175	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3669122..3669949 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12175.t1.start1	Gvermi12175.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3669122..3669124 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12175.t1.CDS1	Gvermi12175.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3669122..3669949 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12175.t1.exon1	Gvermi12175.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3669122..3669949 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12175.t1.stop1	Gvermi12175.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3669947..3669949 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12175.t1	Gvermi12175.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3669122..3669949 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3669122..3669949+
coding sequence from alignment at ScGOVlb_3404:3669122..3669949+

mRNA sequence

>Gvermi12175.t1 ID=Gvermi12175.t1|Name=Gvermi12175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=276bp
MALPSDFAEKYGPWALVTGSSAGMGAEYAKQLAATGLNIVLVARRKSLMD
KIASSISEEYNVQTRCIAEDLSSSAGCDAVRAACDDIEVGLLVNNAGIAL
NGSFFRDDETQHRKLVDLNCTAVVSLSHSFGRLMIERKRGGIIFMSSVMS
SPMPYFSTYCASKSFVSCFAKTLREELGKYGVSATVIEPGAVDTDMSREA
GKNIDFAKGGFASMSAEQCITEALAAFAAGRASYIPGVKNKVSMSIMRSI
PDPISIKLGNVLVGTMMNPEIMKPS*

spliced messenger RNA

>Gvermi12175.t1 ID=Gvermi12175.t1|Name=Gvermi12175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:3669122..3669949+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTCCATCTGACTTTGCAGAAAAGTACGGTCCATGGGCGCTTGT
GACTGGATCATCAGCTGGAATGGGCGCAGAGTATGCCAAGCAACTCGCTG
CAACAGGTTTAAACATCGTTCTGGTCGCACGTCGCAAGTCCTTGATGGAC
AAAATCGCGTCTTCGATCAGTGAAGAATACAATGTCCAAACTCGATGCAT
TGCCGAAGACCTATCCAGCAGCGCAGGCTGTGATGCGGTCAGAGCCGCAT
GTGACGACATCGAAGTTGGTCTGCTGGTCAACAATGCTGGAATAGCCTTG
AATGGCTCTTTTTTCAGAGACGATGAAACACAGCATCGAAAATTGGTAGA
TTTGAACTGCACCGCTGTTGTCTCTTTGAGTCACTCTTTTGGAAGATTGA
TGATCGAACGAAAGCGGGGCGGCATTATTTTCATGAGCAGCGTTATGTCT
TCTCCAATGCCATACTTTTCAACGTATTGTGCATCAAAGAGTTTTGTCTC
TTGCTTTGCGAAGACGTTGAGAGAAGAGCTTGGCAAATATGGCGTTTCTG
CCACTGTTATAGAACCAGGGGCTGTCGATACTGACATGAGTCGCGAGGCT
GGGAAAAACATCGATTTTGCCAAGGGCGGTTTTGCGAGTATGTCCGCTGA
ACAATGCATTACGGAAGCTTTGGCTGCCTTTGCTGCCGGGAGGGCTTCTT
ACATCCCTGGAGTGAAGAACAAGGTTTCGATGTCCATTATGAGATCCATT
CCTGATCCGATATCGATTAAGTTGGGAAATGTACTGGTTGGCACAATGAT
GAATCCCGAGATTATGAAGCCAAGCTAG

protein sequence of Gvermi12175.t1

>Gvermi12175.t1 ID=Gvermi12175.t1|Name=Gvermi12175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=276bp
MALPSDFAEKYGPWALVTGSSAGMGAEYAKQLAATGLNIVLVARRKSLMD
KIASSISEEYNVQTRCIAEDLSSSAGCDAVRAACDDIEVGLLVNNAGIAL
NGSFFRDDETQHRKLVDLNCTAVVSLSHSFGRLMIERKRGGIIFMSSVMS
SPMPYFSTYCASKSFVSCFAKTLREELGKYGVSATVIEPGAVDTDMSREA
GKNIDFAKGGFASMSAEQCITEALAAFAAGRASYIPGVKNKVSMSIMRSI
PDPISIKLGNVLVGTMMNPEIMKPS*

mRNA from alignment at ScGOVlb_3404:3669122..3669949+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12175.t1 ID=Gvermi12175.t1|Name=Gvermi12175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:3669122..3669949+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCTTCCATCTGACTTTGCAGAAAAGTACGGTCCATGGGCGCTTGT
GACTGGATCATCAGCTGGAATGGGCGCAGAGTATGCCAAGCAACTCGCTG
CAACAGGTTTAAACATCGTTCTGGTCGCACGTCGCAAGTCCTTGATGGAC
AAAATCGCGTCTTCGATCAGTGAAGAATACAATGTCCAAACTCGATGCAT
TGCCGAAGACCTATCCAGCAGCGCAGGCTGTGATGCGGTCAGAGCCGCAT
GTGACGACATCGAAGTTGGTCTGCTGGTCAACAATGCTGGAATAGCCTTG
AATGGCTCTTTTTTCAGAGACGATGAAACACAGCATCGAAAATTGGTAGA
TTTGAACTGCACCGCTGTTGTCTCTTTGAGTCACTCTTTTGGAAGATTGA
TGATCGAACGAAAGCGGGGCGGCATTATTTTCATGAGCAGCGTTATGTCT
TCTCCAATGCCATACTTTTCAACGTATTGTGCATCAAAGAGTTTTGTCTC
TTGCTTTGCGAAGACGTTGAGAGAAGAGCTTGGCAAATATGGCGTTTCTG
CCACTGTTATAGAACCAGGGGCTGTCGATACTGACATGAGTCGCGAGGCT
GGGAAAAACATCGATTTTGCCAAGGGCGGTTTTGCGAGTATGTCCGCTGA
ACAATGCATTACGGAAGCTTTGGCTGCCTTTGCTGCCGGGAGGGCTTCTT
ACATCCCTGGAGTGAAGAACAAGGTTTCGATGTCCATTATGAGATCCATT
CCTGATCCGATATCGATTAAGTTGGGAAATGTACTGGTTGGCACAATGAT
GAATCCCGAGATTATGAAGCCAAGCTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:3669122..3669949+

>Gvermi12175.t1 ID=Gvermi12175.t1|Name=Gvermi12175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:3669122..3669949+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCTTCCATCTGACTTTGCAGAAAAGTACGGTCCATGGGCGCTTGT
GACTGGATCATCAGCTGGAATGGGCGCAGAGTATGCCAAGCAACTCGCTG
CAACAGGTTTAAACATCGTTCTGGTCGCACGTCGCAAGTCCTTGATGGAC
AAAATCGCGTCTTCGATCAGTGAAGAATACAATGTCCAAACTCGATGCAT
TGCCGAAGACCTATCCAGCAGCGCAGGCTGTGATGCGGTCAGAGCCGCAT
GTGACGACATCGAAGTTGGTCTGCTGGTCAACAATGCTGGAATAGCCTTG
AATGGCTCTTTTTTCAGAGACGATGAAACACAGCATCGAAAATTGGTAGA
TTTGAACTGCACCGCTGTTGTCTCTTTGAGTCACTCTTTTGGAAGATTGA
TGATCGAACGAAAGCGGGGCGGCATTATTTTCATGAGCAGCGTTATGTCT
TCTCCAATGCCATACTTTTCAACGTATTGTGCATCAAAGAGTTTTGTCTC
TTGCTTTGCGAAGACGTTGAGAGAAGAGCTTGGCAAATATGGCGTTTCTG
CCACTGTTATAGAACCAGGGGCTGTCGATACTGACATGAGTCGCGAGGCT
GGGAAAAACATCGATTTTGCCAAGGGCGGTTTTGCGAGTATGTCCGCTGA
ACAATGCATTACGGAAGCTTTGGCTGCCTTTGCTGCCGGGAGGGCTTCTT
ACATCCCTGGAGTGAAGAACAAGGTTTCGATGTCCATTATGAGATCCATT
CCTGATCCGATATCGATTAAGTTGGGAAATGTACTGGTTGGCACAATGAT
GAATCCCGAGATTATGAAGCCAAGCTAG