Gvermi12173.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12173.t1
Unique NameGvermi12173.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3662868..3663926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702978.1
PFAMsMyb_DNA-binding,RWP-RK
Max annot lvl2759|Eukaryota
Evalue1.38e-10
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Descriptionubiquitin modification-dependent histone binding
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12173Gvermi12173Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3662868..3663926 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12173.t1.stop1Gvermi12173.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3662868..3662870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12173.t1.CDS1Gvermi12173.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3662868..3663926 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12173.t1.exon1Gvermi12173.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3662868..3663926 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12173.t1.start1Gvermi12173.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3663924..3663926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12173.t1Gvermi12173.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3662868..3663926 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12173.t1 ID=Gvermi12173.t1|Name=Gvermi12173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=353bp
MVDTVVAPNYDSIIDRQHKRIVQLEADLARCSSHIRKLKTRSHPSSSMYA
AHDLARLHAAHMHAMLAMSPALHPIAAAHPLHVAAAAAAAAATNVPLMAP
ANAQPAAASTQLTGAHMFARAAAGPADDEDRAGKTRYWTAKEHQQFLYAV
KLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKRRNQALAAAA
ASAAAATASGDSAHHDEHKIAAEDAAESESTCPMDDTMVKDEPTTALNDC
AFSPISHDGEDCVNEDVSVTNVNDKLMNNITPASVNCDGGGMKKDSSLTN
LADYDDFMRRITSVPEHDRSEIFEPRHADLDVDILSDAQKNGQFDDSLLA
EL*
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spliced messenger RNA

>Gvermi12173.t1 ID=Gvermi12173.t1|Name=Gvermi12173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at ScGOVlb_3404:3662868..3663926- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGACACCGTCGTTGCACCCAACTACGATTCCATCATCGATCGCCA
GCACAAGCGAATCGTCCAACTGGAGGCCGACCTGGCGCGCTGCTCGTCGC
ACATCCGAAAATTGAAAACCCGCTCACACCCCTCGTCTTCCATGTATGCC
GCCCACGACCTTGCCCGCTTGCACGCCGCCCATATGCACGCCATGCTGGC
CATGTCGCCGGCTCTGCACCCGATCGCCGCCGCGCACCCGCTACACGTCG
CCGCCGCCGCTGCCGCCGCCGCCGCCACCAACGTGCCGCTCATGGCCCCC
GCCAACGCCCAGCCCGCCGCCGCATCGACCCAGCTCACGGGCGCTCACAT
GTTCGCTCGCGCGGCCGCCGGCCCCGCCGACGACGAGGACAGGGCTGGCA
AAACCCGCTATTGGACCGCCAAGGAGCACCAGCAGTTTTTGTACGCCGTC
AAGTTGTTTGGCGCCAAGAATTACGTGGCTATCAGTCAGTTTGTGGGATC
GAGAACCCCGAAGCAGGTTCGCACGCATGCGCAAAAGTACCAGATGAAGC
TCGAGCGGGAGGCCAAGAAGCGCAGGAATCAGGCTTTGGCCGCCGCTGCC
GCCTCCGCCGCCGCCGCCACGGCCTCCGGTGACTCTGCCCACCATGATGA
ACACAAGATCGCTGCCGAGGATGCCGCGGAGAGTGAGAGCACTTGTCCTA
TGGACGATACTATGGTCAAGGACGAGCCGACCACAGCCCTTAACGATTGC
GCTTTTTCACCGATTTCCCATGACGGCGAGGACTGTGTCAATGAAGACGT
GTCCGTGACGAATGTTAACGATAAATTGATGAATAACATCACGCCGGCTT
CGGTGAATTGTGATGGAGGCGGCATGAAGAAGGATTCTAGTTTGACCAAC
CTGGCGGACTACGATGACTTCATGCGACGGATTACTAGTGTTCCTGAGCA
CGATCGTTCCGAAATTTTTGAGCCGAGGCACGCGGATCTGGACGTGGATA
TTTTGAGTGACGCGCAGAAGAACGGCCAGTTTGATGACTCCCTTTTGGCT
GAACTCTAG
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protein sequence of Gvermi12173.t1

>Gvermi12173.t1 ID=Gvermi12173.t1|Name=Gvermi12173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=353bp
MVDTVVAPNYDSIIDRQHKRIVQLEADLARCSSHIRKLKTRSHPSSSMYA
AHDLARLHAAHMHAMLAMSPALHPIAAAHPLHVAAAAAAAAATNVPLMAP
ANAQPAAASTQLTGAHMFARAAAGPADDEDRAGKTRYWTAKEHQQFLYAV
KLFGAKNYVAISQFVGSRTPKQVRTHAQKYQMKLEREAKKRRNQALAAAA
ASAAAATASGDSAHHDEHKIAAEDAAESESTCPMDDTMVKDEPTTALNDC
AFSPISHDGEDCVNEDVSVTNVNDKLMNNITPASVNCDGGGMKKDSSLTN
LADYDDFMRRITSVPEHDRSEIFEPRHADLDVDILSDAQKNGQFDDSLLA
EL*
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mRNA from alignment at ScGOVlb_3404:3662868..3663926-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12173.t1 ID=Gvermi12173.t1|Name=Gvermi12173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at ScGOVlb_3404:3662868..3663926- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGACACCGTCGTTGCACCCAACTACGATTCCATCATCGATCGCCA
GCACAAGCGAATCGTCCAACTGGAGGCCGACCTGGCGCGCTGCTCGTCGC
ACATCCGAAAATTGAAAACCCGCTCACACCCCTCGTCTTCCATGTATGCC
GCCCACGACCTTGCCCGCTTGCACGCCGCCCATATGCACGCCATGCTGGC
CATGTCGCCGGCTCTGCACCCGATCGCCGCCGCGCACCCGCTACACGTCG
CCGCCGCCGCTGCCGCCGCCGCCGCCACCAACGTGCCGCTCATGGCCCCC
GCCAACGCCCAGCCCGCCGCCGCATCGACCCAGCTCACGGGCGCTCACAT
GTTCGCTCGCGCGGCCGCCGGCCCCGCCGACGACGAGGACAGGGCTGGCA
AAACCCGCTATTGGACCGCCAAGGAGCACCAGCAGTTTTTGTACGCCGTC
AAGTTGTTTGGCGCCAAGAATTACGTGGCTATCAGTCAGTTTGTGGGATC
GAGAACCCCGAAGCAGGTTCGCACGCATGCGCAAAAGTACCAGATGAAGC
TCGAGCGGGAGGCCAAGAAGCGCAGGAATCAGGCTTTGGCCGCCGCTGCC
GCCTCCGCCGCCGCCGCCACGGCCTCCGGTGACTCTGCCCACCATGATGA
ACACAAGATCGCTGCCGAGGATGCCGCGGAGAGTGAGAGCACTTGTCCTA
TGGACGATACTATGGTCAAGGACGAGCCGACCACAGCCCTTAACGATTGC
GCTTTTTCACCGATTTCCCATGACGGCGAGGACTGTGTCAATGAAGACGT
GTCCGTGACGAATGTTAACGATAAATTGATGAATAACATCACGCCGGCTT
CGGTGAATTGTGATGGAGGCGGCATGAAGAAGGATTCTAGTTTGACCAAC
CTGGCGGACTACGATGACTTCATGCGACGGATTACTAGTGTTCCTGAGCA
CGATCGTTCCGAAATTTTTGAGCCGAGGCACGCGGATCTGGACGTGGATA
TTTTGAGTGACGCGCAGAAGAACGGCCAGTTTGATGACTCCCTTTTGGCT
GAACTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3662868..3663926-

>Gvermi12173.t1 ID=Gvermi12173.t1|Name=Gvermi12173.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1059bp|location=Sequence derived from alignment at ScGOVlb_3404:3662868..3663926- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGACACCGTCGTTGCACCCAACTACGATTCCATCATCGATCGCCA
GCACAAGCGAATCGTCCAACTGGAGGCCGACCTGGCGCGCTGCTCGTCGC
ACATCCGAAAATTGAAAACCCGCTCACACCCCTCGTCTTCCATGTATGCC
GCCCACGACCTTGCCCGCTTGCACGCCGCCCATATGCACGCCATGCTGGC
CATGTCGCCGGCTCTGCACCCGATCGCCGCCGCGCACCCGCTACACGTCG
CCGCCGCCGCTGCCGCCGCCGCCGCCACCAACGTGCCGCTCATGGCCCCC
GCCAACGCCCAGCCCGCCGCCGCATCGACCCAGCTCACGGGCGCTCACAT
GTTCGCTCGCGCGGCCGCCGGCCCCGCCGACGACGAGGACAGGGCTGGCA
AAACCCGCTATTGGACCGCCAAGGAGCACCAGCAGTTTTTGTACGCCGTC
AAGTTGTTTGGCGCCAAGAATTACGTGGCTATCAGTCAGTTTGTGGGATC
GAGAACCCCGAAGCAGGTTCGCACGCATGCGCAAAAGTACCAGATGAAGC
TCGAGCGGGAGGCCAAGAAGCGCAGGAATCAGGCTTTGGCCGCCGCTGCC
GCCTCCGCCGCCGCCGCCACGGCCTCCGGTGACTCTGCCCACCATGATGA
ACACAAGATCGCTGCCGAGGATGCCGCGGAGAGTGAGAGCACTTGTCCTA
TGGACGATACTATGGTCAAGGACGAGCCGACCACAGCCCTTAACGATTGC
GCTTTTTCACCGATTTCCCATGACGGCGAGGACTGTGTCAATGAAGACGT
GTCCGTGACGAATGTTAACGATAAATTGATGAATAACATCACGCCGGCTT
CGGTGAATTGTGATGGAGGCGGCATGAAGAAGGATTCTAGTTTGACCAAC
CTGGCGGACTACGATGACTTCATGCGACGGATTACTAGTGTTCCTGAGCA
CGATCGTTCCGAAATTTTTGAGCCGAGGCACGCGGATCTGGACGTGGATA
TTTTGAGTGACGCGCAGAAGAACGGCCAGTTTGATGACTCCCTTTTGGCT
GAACTCTAG
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