Gvermi12172.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12172.t1
Unique NameGvermi12172.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length542
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3659692..3661317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12172Gvermi12172Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3659692..3661317 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12172.t1.start1Gvermi12172.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3659692..3659694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12172.t1.CDS1Gvermi12172.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3659692..3661317 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12172.t1.exon1Gvermi12172.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3659692..3661317 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12172.t1.stop1Gvermi12172.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3661315..3661317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12172.t1Gvermi12172.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3659692..3661317 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12172.t1 ID=Gvermi12172.t1|Name=Gvermi12172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=542bp
MDFASRVGPPPVPDSIKQLDMLEFHRRQAAEPMPSLPPEVLQAIRERYPR
IKKLDQVMEREMSRDDYDINDHRVCSWAYEYLRPWAMGRPLQALIACSTA
YSTVKLVQYVKSRVSQTVLMSALVSVDTFFTVALGAVFPAFLLSWALHRA
RFNDVRTDGVRRSVFMFCLTALTLPGVWAMAATTNVSLAMVSSVFVRCML
FVPIWGWLDLRREATLGELPLAKLFKVWRVLATVAVLFYGSILRLLTMFV
PQDFPAHFFARRADLLRRALWKTFPVSCSLCNDPRGLFLLGSLVVAGLAI
YALYLIVFVTDCCRIRCHRECESVLTSFCVGKGIYQPNRHPDEIRSSLSA
PDPDETFLPSRPMMLRPDEDQLATNSGVMADKVLPVFAYLDREKEIMKQT
GVTEWMKYRSEQIPAHTEEEKEERDRKALLSWAKALQPEDEKLSIEDYFQ
TVEDDEYFYDPTTGNWLFVEGPEGQKGDKDKGNENTQNGIDLQAEDELEI
PPEWEPIVQRMLDRNNGEGEDESADSRDDEDAGSASASVYV*
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spliced messenger RNA

>Gvermi12172.t1 ID=Gvermi12172.t1|Name=Gvermi12172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at ScGOVlb_3404:3659692..3661317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTCGCATCCAGGGTCGGCCCCCCTCCCGTTCCGGACTCAATAAA
ACAACTGGATATGCTCGAGTTCCACCGCCGACAAGCAGCCGAACCGATGC
CTTCTTTACCTCCTGAAGTGTTGCAAGCCATTCGAGAAAGATATCCCAGG
ATAAAGAAACTTGACCAAGTAATGGAGAGGGAAATGAGCCGAGATGATTA
TGACATCAATGATCATCGTGTTTGTTCTTGGGCTTATGAATACTTGAGAC
CTTGGGCCATGGGTCGGCCTTTGCAAGCGTTGATTGCATGTTCAACAGCA
TATTCTACCGTCAAGCTGGTTCAATACGTAAAAAGTCGAGTATCACAGAC
TGTACTGATGAGCGCTCTTGTTTCCGTGGACACTTTCTTCACAGTGGCCC
TTGGCGCAGTTTTTCCGGCCTTTCTTTTGTCATGGGCATTGCATCGGGCG
CGATTTAACGACGTGCGAACCGATGGCGTCCGTCGTTCGGTTTTTATGTT
CTGCCTCACAGCATTGACGCTTCCGGGCGTTTGGGCCATGGCAGCGACCA
CAAACGTTAGTCTGGCAATGGTTTCCTCCGTATTTGTGCGATGCATGCTT
TTCGTGCCCATTTGGGGGTGGCTGGACCTACGACGAGAAGCCACTCTGGG
AGAGCTTCCGCTGGCAAAGCTGTTCAAAGTTTGGAGAGTTCTCGCAACAG
TAGCAGTCCTGTTTTACGGAAGCATATTGCGATTGTTGACAATGTTCGTG
CCGCAGGACTTTCCAGCTCATTTCTTTGCGCGCCGTGCAGATTTGTTGCG
GCGAGCGCTATGGAAGACGTTTCCAGTTTCATGCTCGCTATGCAATGATC
CGCGCGGATTGTTTCTATTGGGGTCGCTAGTTGTCGCCGGGTTGGCCATA
TACGCTCTCTATTTGATCGTTTTCGTCACAGACTGTTGCCGAATCAGATG
TCATCGTGAATGCGAATCCGTGCTAACATCCTTCTGTGTAGGAAAGGGAA
TATATCAACCAAATCGTCATCCCGACGAAATACGAAGCTCTCTCTCTGCG
CCCGATCCCGACGAGACATTCCTTCCTTCTCGTCCCATGATGTTGCGCCC
AGATGAGGATCAGTTGGCAACCAACTCTGGGGTCATGGCTGATAAGGTGT
TGCCAGTTTTCGCATACTTGGACAGAGAAAAAGAAATAATGAAGCAAACA
GGAGTTACTGAATGGATGAAGTACCGCTCCGAGCAAATTCCGGCGCACAC
CGAAGAAGAAAAGGAGGAGCGAGACAGGAAAGCTCTCCTCTCCTGGGCCA
AAGCGCTGCAGCCTGAGGACGAAAAGCTGTCGATTGAAGACTATTTCCAG
ACTGTGGAAGATGACGAGTACTTTTACGACCCAACAACAGGAAACTGGTT
GTTTGTAGAAGGTCCAGAAGGACAAAAAGGCGACAAGGACAAGGGCAATG
AGAACACCCAGAACGGAATAGACCTGCAGGCTGAGGACGAGCTGGAGATC
CCGCCTGAGTGGGAGCCTATTGTACAGCGTATGCTCGATAGGAACAACGG
TGAGGGTGAAGACGAAAGTGCAGATTCGCGAGATGATGAGGATGCAGGAT
CTGCCTCTGCCTCCGTGTATGTATAG
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protein sequence of Gvermi12172.t1

>Gvermi12172.t1 ID=Gvermi12172.t1|Name=Gvermi12172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=542bp
MDFASRVGPPPVPDSIKQLDMLEFHRRQAAEPMPSLPPEVLQAIRERYPR
IKKLDQVMEREMSRDDYDINDHRVCSWAYEYLRPWAMGRPLQALIACSTA
YSTVKLVQYVKSRVSQTVLMSALVSVDTFFTVALGAVFPAFLLSWALHRA
RFNDVRTDGVRRSVFMFCLTALTLPGVWAMAATTNVSLAMVSSVFVRCML
FVPIWGWLDLRREATLGELPLAKLFKVWRVLATVAVLFYGSILRLLTMFV
PQDFPAHFFARRADLLRRALWKTFPVSCSLCNDPRGLFLLGSLVVAGLAI
YALYLIVFVTDCCRIRCHRECESVLTSFCVGKGIYQPNRHPDEIRSSLSA
PDPDETFLPSRPMMLRPDEDQLATNSGVMADKVLPVFAYLDREKEIMKQT
GVTEWMKYRSEQIPAHTEEEKEERDRKALLSWAKALQPEDEKLSIEDYFQ
TVEDDEYFYDPTTGNWLFVEGPEGQKGDKDKGNENTQNGIDLQAEDELEI
PPEWEPIVQRMLDRNNGEGEDESADSRDDEDAGSASASVYV*
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mRNA from alignment at ScGOVlb_3404:3659692..3661317+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12172.t1 ID=Gvermi12172.t1|Name=Gvermi12172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at ScGOVlb_3404:3659692..3661317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTTCGCATCCAGGGTCGGCCCCCCTCCCGTTCCGGACTCAATAAA
ACAACTGGATATGCTCGAGTTCCACCGCCGACAAGCAGCCGAACCGATGC
CTTCTTTACCTCCTGAAGTGTTGCAAGCCATTCGAGAAAGATATCCCAGG
ATAAAGAAACTTGACCAAGTAATGGAGAGGGAAATGAGCCGAGATGATTA
TGACATCAATGATCATCGTGTTTGTTCTTGGGCTTATGAATACTTGAGAC
CTTGGGCCATGGGTCGGCCTTTGCAAGCGTTGATTGCATGTTCAACAGCA
TATTCTACCGTCAAGCTGGTTCAATACGTAAAAAGTCGAGTATCACAGAC
TGTACTGATGAGCGCTCTTGTTTCCGTGGACACTTTCTTCACAGTGGCCC
TTGGCGCAGTTTTTCCGGCCTTTCTTTTGTCATGGGCATTGCATCGGGCG
CGATTTAACGACGTGCGAACCGATGGCGTCCGTCGTTCGGTTTTTATGTT
CTGCCTCACAGCATTGACGCTTCCGGGCGTTTGGGCCATGGCAGCGACCA
CAAACGTTAGTCTGGCAATGGTTTCCTCCGTATTTGTGCGATGCATGCTT
TTCGTGCCCATTTGGGGGTGGCTGGACCTACGACGAGAAGCCACTCTGGG
AGAGCTTCCGCTGGCAAAGCTGTTCAAAGTTTGGAGAGTTCTCGCAACAG
TAGCAGTCCTGTTTTACGGAAGCATATTGCGATTGTTGACAATGTTCGTG
CCGCAGGACTTTCCAGCTCATTTCTTTGCGCGCCGTGCAGATTTGTTGCG
GCGAGCGCTATGGAAGACGTTTCCAGTTTCATGCTCGCTATGCAATGATC
CGCGCGGATTGTTTCTATTGGGGTCGCTAGTTGTCGCCGGGTTGGCCATA
TACGCTCTCTATTTGATCGTTTTCGTCACAGACTGTTGCCGAATCAGATG
TCATCGTGAATGCGAATCCGTGCTAACATCCTTCTGTGTAGGAAAGGGAA
TATATCAACCAAATCGTCATCCCGACGAAATACGAAGCTCTCTCTCTGCG
CCCGATCCCGACGAGACATTCCTTCCTTCTCGTCCCATGATGTTGCGCCC
AGATGAGGATCAGTTGGCAACCAACTCTGGGGTCATGGCTGATAAGGTGT
TGCCAGTTTTCGCATACTTGGACAGAGAAAAAGAAATAATGAAGCAAACA
GGAGTTACTGAATGGATGAAGTACCGCTCCGAGCAAATTCCGGCGCACAC
CGAAGAAGAAAAGGAGGAGCGAGACAGGAAAGCTCTCCTCTCCTGGGCCA
AAGCGCTGCAGCCTGAGGACGAAAAGCTGTCGATTGAAGACTATTTCCAG
ACTGTGGAAGATGACGAGTACTTTTACGACCCAACAACAGGAAACTGGTT
GTTTGTAGAAGGTCCAGAAGGACAAAAAGGCGACAAGGACAAGGGCAATG
AGAACACCCAGAACGGAATAGACCTGCAGGCTGAGGACGAGCTGGAGATC
CCGCCTGAGTGGGAGCCTATTGTACAGCGTATGCTCGATAGGAACAACGG
TGAGGGTGAAGACGAAAGTGCAGATTCGCGAGATGATGAGGATGCAGGAT
CTGCCTCTGCCTCCGTGTATGTATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3659692..3661317+

>Gvermi12172.t1 ID=Gvermi12172.t1|Name=Gvermi12172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1626bp|location=Sequence derived from alignment at ScGOVlb_3404:3659692..3661317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTTCGCATCCAGGGTCGGCCCCCCTCCCGTTCCGGACTCAATAAA
ACAACTGGATATGCTCGAGTTCCACCGCCGACAAGCAGCCGAACCGATGC
CTTCTTTACCTCCTGAAGTGTTGCAAGCCATTCGAGAAAGATATCCCAGG
ATAAAGAAACTTGACCAAGTAATGGAGAGGGAAATGAGCCGAGATGATTA
TGACATCAATGATCATCGTGTTTGTTCTTGGGCTTATGAATACTTGAGAC
CTTGGGCCATGGGTCGGCCTTTGCAAGCGTTGATTGCATGTTCAACAGCA
TATTCTACCGTCAAGCTGGTTCAATACGTAAAAAGTCGAGTATCACAGAC
TGTACTGATGAGCGCTCTTGTTTCCGTGGACACTTTCTTCACAGTGGCCC
TTGGCGCAGTTTTTCCGGCCTTTCTTTTGTCATGGGCATTGCATCGGGCG
CGATTTAACGACGTGCGAACCGATGGCGTCCGTCGTTCGGTTTTTATGTT
CTGCCTCACAGCATTGACGCTTCCGGGCGTTTGGGCCATGGCAGCGACCA
CAAACGTTAGTCTGGCAATGGTTTCCTCCGTATTTGTGCGATGCATGCTT
TTCGTGCCCATTTGGGGGTGGCTGGACCTACGACGAGAAGCCACTCTGGG
AGAGCTTCCGCTGGCAAAGCTGTTCAAAGTTTGGAGAGTTCTCGCAACAG
TAGCAGTCCTGTTTTACGGAAGCATATTGCGATTGTTGACAATGTTCGTG
CCGCAGGACTTTCCAGCTCATTTCTTTGCGCGCCGTGCAGATTTGTTGCG
GCGAGCGCTATGGAAGACGTTTCCAGTTTCATGCTCGCTATGCAATGATC
CGCGCGGATTGTTTCTATTGGGGTCGCTAGTTGTCGCCGGGTTGGCCATA
TACGCTCTCTATTTGATCGTTTTCGTCACAGACTGTTGCCGAATCAGATG
TCATCGTGAATGCGAATCCGTGCTAACATCCTTCTGTGTAGGAAAGGGAA
TATATCAACCAAATCGTCATCCCGACGAAATACGAAGCTCTCTCTCTGCG
CCCGATCCCGACGAGACATTCCTTCCTTCTCGTCCCATGATGTTGCGCCC
AGATGAGGATCAGTTGGCAACCAACTCTGGGGTCATGGCTGATAAGGTGT
TGCCAGTTTTCGCATACTTGGACAGAGAAAAAGAAATAATGAAGCAAACA
GGAGTTACTGAATGGATGAAGTACCGCTCCGAGCAAATTCCGGCGCACAC
CGAAGAAGAAAAGGAGGAGCGAGACAGGAAAGCTCTCCTCTCCTGGGCCA
AAGCGCTGCAGCCTGAGGACGAAAAGCTGTCGATTGAAGACTATTTCCAG
ACTGTGGAAGATGACGAGTACTTTTACGACCCAACAACAGGAAACTGGTT
GTTTGTAGAAGGTCCAGAAGGACAAAAAGGCGACAAGGACAAGGGCAATG
AGAACACCCAGAACGGAATAGACCTGCAGGCTGAGGACGAGCTGGAGATC
CCGCCTGAGTGGGAGCCTATTGTACAGCGTATGCTCGATAGGAACAACGG
TGAGGGTGAAGACGAAAGTGCAGATTCGCGAGATGATGAGGATGCAGGAT
CTGCCTCTGCCTCCGTGTATGTATAG
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