Gvermi12171.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12171.t1
Unique NameGvermi12171.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3658318..3659187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29760.VIT_01s0010g01670.t01
PFAMsSwi3,zf-CCHC
Max annot lvl35493|Streptophyta
KEGG koko:K10904
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0019219,GO:0019222,GO:0022402,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032991,GO:0033262,GO:0033554,GO:0034641,GO:0034645,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1903047,GO:2000104,GO:2000112,GO:2000113
Evalue0.000749
EggNOG OGsKOG3004@1|root,KOG3004@2759|Eukaryota,37KH8@33090|Viridiplantae,3GDF9@35493|Streptophyta
DescriptionTIMELESS-interacting protein
COG categoryD
BRITEko00000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12171Gvermi12171Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3658318..3659187 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12171.t1.stop1Gvermi12171.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3658318..3658320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12171.t1.CDS1Gvermi12171.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3658318..3659187 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12171.t1.exon1Gvermi12171.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3658318..3659187 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12171.t1.start1Gvermi12171.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3659185..3659187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12171.t1Gvermi12171.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3658318..3659187 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12171.t1 ID=Gvermi12171.t1|Name=Gvermi12171.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=290bp
MSAQAISAQNGVARPASVPLSAEPPKKKSRAAHLIPKLTVGDFSETSFQD
LIKIGRKAKARGKPREGHEAKALGDLLRNVSLWAKEVAPQYSMSEFIFAS
QALGTNRSLKPMLANLRLAEFREVNAEFEGIPSVDQPVVDQAVGSDLNFT
DTGVKVMAEAPPDEMDALEWSMVPSDQWEEEDVMMDRMEMEMNTIQPKQV
VSHQNTAKSVAAAVQNSDEAHSAQNDERHEKSRSEIPQLQQEPDSLIELR
QSHEENEEVRKTTADVETHSQQNIHKSDGGESNIDPCSS*
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spliced messenger RNA

>Gvermi12171.t1 ID=Gvermi12171.t1|Name=Gvermi12171.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:3658318..3659187- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGCAGGCCATCTCTGCTCAAAATGGCGTCGCACGTCCGGCTTC
CGTCCCGCTCTCGGCAGAACCCCCTAAAAAGAAATCACGTGCCGCCCATT
TAATACCAAAACTAACCGTTGGCGATTTCTCCGAAACTTCATTTCAAGAT
CTCATCAAAATTGGGAGGAAAGCGAAGGCTCGTGGTAAACCTCGAGAGGG
GCACGAAGCAAAAGCTCTCGGGGATTTGTTGCGTAATGTATCGCTGTGGG
CTAAAGAGGTTGCTCCCCAGTACTCCATGTCGGAATTCATTTTCGCGTCG
CAGGCATTAGGCACAAATAGGTCCCTCAAACCAATGCTCGCTAATCTGCG
ATTGGCGGAATTTCGTGAGGTTAACGCTGAATTTGAAGGAATTCCCTCTG
TTGACCAACCGGTTGTTGATCAGGCTGTCGGTTCTGACTTAAATTTCACA
GATACTGGTGTGAAGGTCATGGCAGAAGCTCCTCCTGATGAGATGGATGC
TTTGGAATGGAGCATGGTGCCCTCTGACCAGTGGGAGGAAGAGGACGTTA
TGATGGACAGAATGGAAATGGAAATGAACACCATTCAACCAAAACAAGTT
GTTTCACATCAAAATACTGCGAAAAGCGTAGCGGCTGCAGTACAGAACAG
TGATGAAGCACATTCTGCACAAAACGATGAAAGGCATGAAAAAAGTCGTT
CTGAAATACCTCAACTGCAACAAGAGCCGGATTCCCTTATAGAGTTGAGA
CAATCACATGAGGAAAATGAGGAAGTTCGCAAAACCACTGCCGATGTAGA
GACCCATTCCCAGCAAAACATTCATAAATCAGACGGTGGCGAGTCGAACA
TTGATCCTTGTAGCTCGTGA
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protein sequence of Gvermi12171.t1

>Gvermi12171.t1 ID=Gvermi12171.t1|Name=Gvermi12171.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=290bp
MSAQAISAQNGVARPASVPLSAEPPKKKSRAAHLIPKLTVGDFSETSFQD
LIKIGRKAKARGKPREGHEAKALGDLLRNVSLWAKEVAPQYSMSEFIFAS
QALGTNRSLKPMLANLRLAEFREVNAEFEGIPSVDQPVVDQAVGSDLNFT
DTGVKVMAEAPPDEMDALEWSMVPSDQWEEEDVMMDRMEMEMNTIQPKQV
VSHQNTAKSVAAAVQNSDEAHSAQNDERHEKSRSEIPQLQQEPDSLIELR
QSHEENEEVRKTTADVETHSQQNIHKSDGGESNIDPCSS*
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mRNA from alignment at ScGOVlb_3404:3658318..3659187-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12171.t1 ID=Gvermi12171.t1|Name=Gvermi12171.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:3658318..3659187- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGCAGGCCATCTCTGCTCAAAATGGCGTCGCACGTCCGGCTTC
CGTCCCGCTCTCGGCAGAACCCCCTAAAAAGAAATCACGTGCCGCCCATT
TAATACCAAAACTAACCGTTGGCGATTTCTCCGAAACTTCATTTCAAGAT
CTCATCAAAATTGGGAGGAAAGCGAAGGCTCGTGGTAAACCTCGAGAGGG
GCACGAAGCAAAAGCTCTCGGGGATTTGTTGCGTAATGTATCGCTGTGGG
CTAAAGAGGTTGCTCCCCAGTACTCCATGTCGGAATTCATTTTCGCGTCG
CAGGCATTAGGCACAAATAGGTCCCTCAAACCAATGCTCGCTAATCTGCG
ATTGGCGGAATTTCGTGAGGTTAACGCTGAATTTGAAGGAATTCCCTCTG
TTGACCAACCGGTTGTTGATCAGGCTGTCGGTTCTGACTTAAATTTCACA
GATACTGGTGTGAAGGTCATGGCAGAAGCTCCTCCTGATGAGATGGATGC
TTTGGAATGGAGCATGGTGCCCTCTGACCAGTGGGAGGAAGAGGACGTTA
TGATGGACAGAATGGAAATGGAAATGAACACCATTCAACCAAAACAAGTT
GTTTCACATCAAAATACTGCGAAAAGCGTAGCGGCTGCAGTACAGAACAG
TGATGAAGCACATTCTGCACAAAACGATGAAAGGCATGAAAAAAGTCGTT
CTGAAATACCTCAACTGCAACAAGAGCCGGATTCCCTTATAGAGTTGAGA
CAATCACATGAGGAAAATGAGGAAGTTCGCAAAACCACTGCCGATGTAGA
GACCCATTCCCAGCAAAACATTCATAAATCAGACGGTGGCGAGTCGAACA
TTGATCCTTGTAGCTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3658318..3659187-

>Gvermi12171.t1 ID=Gvermi12171.t1|Name=Gvermi12171.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:3658318..3659187- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGCAGGCCATCTCTGCTCAAAATGGCGTCGCACGTCCGGCTTC
CGTCCCGCTCTCGGCAGAACCCCCTAAAAAGAAATCACGTGCCGCCCATT
TAATACCAAAACTAACCGTTGGCGATTTCTCCGAAACTTCATTTCAAGAT
CTCATCAAAATTGGGAGGAAAGCGAAGGCTCGTGGTAAACCTCGAGAGGG
GCACGAAGCAAAAGCTCTCGGGGATTTGTTGCGTAATGTATCGCTGTGGG
CTAAAGAGGTTGCTCCCCAGTACTCCATGTCGGAATTCATTTTCGCGTCG
CAGGCATTAGGCACAAATAGGTCCCTCAAACCAATGCTCGCTAATCTGCG
ATTGGCGGAATTTCGTGAGGTTAACGCTGAATTTGAAGGAATTCCCTCTG
TTGACCAACCGGTTGTTGATCAGGCTGTCGGTTCTGACTTAAATTTCACA
GATACTGGTGTGAAGGTCATGGCAGAAGCTCCTCCTGATGAGATGGATGC
TTTGGAATGGAGCATGGTGCCCTCTGACCAGTGGGAGGAAGAGGACGTTA
TGATGGACAGAATGGAAATGGAAATGAACACCATTCAACCAAAACAAGTT
GTTTCACATCAAAATACTGCGAAAAGCGTAGCGGCTGCAGTACAGAACAG
TGATGAAGCACATTCTGCACAAAACGATGAAAGGCATGAAAAAAGTCGTT
CTGAAATACCTCAACTGCAACAAGAGCCGGATTCCCTTATAGAGTTGAGA
CAATCACATGAGGAAAATGAGGAAGTTCGCAAAACCACTGCCGATGTAGA
GACCCATTCCCAGCAAAACATTCATAAATCAGACGGTGGCGAGTCGAACA
TTGATCCTTGTAGCTCGTGA
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