Gvermi12170.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12170.t1
Unique NameGvermi12170.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3656728..3657342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706909.1
Preferred nameASMTL
PFAMsDimerisation2,Maf,Methyltransf_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K06287
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue1.1e-56
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota
EC6.1.1.3
Descriptionnucleoside-triphosphate diphosphatase activity
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12170Gvermi12170Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3656728..3657342 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12170.t1.stop1Gvermi12170.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3656728..3656730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12170.t1.CDS1Gvermi12170.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3656728..3657342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12170.t1.exon1Gvermi12170.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3656728..3657342 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12170.t1.start1Gvermi12170.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3657340..3657342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12170.t1Gvermi12170.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3656728..3657342 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12170.t1 ID=Gvermi12170.t1|Name=Gvermi12170.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=205bp
MIIDLLPHLRQKRVILASQSPRRREILELIGLDFVSEASSFAEDLDKSSF
ANPNGYAKKTAEEKTLDVWRKRSKDVDLVIGSDTIVVSEGKILEKPTSEA
DALRMLRSLSGRWHTVVTAVALVCKGELRSFCEEANVCFDNLTDDMISAY
VKTGEPMDKAGAYGIQGRGGAFVKKIDGCYFCVMGLPMNAVSREIRLLVE
DGLL*
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spliced messenger RNA

>Gvermi12170.t1 ID=Gvermi12170.t1|Name=Gvermi12170.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=615bp|location=Sequence derived from alignment at ScGOVlb_3404:3656728..3657342- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATTGATCTTCTACCGCACCTGAGACAAAAGCGGGTCATTTTGGC
CAGTCAGTCTCCTCGTCGCCGAGAAATTCTTGAACTAATTGGGCTGGATT
TTGTGTCTGAAGCTTCATCTTTCGCAGAAGACTTGGACAAGTCAAGTTTT
GCGAACCCGAACGGCTATGCGAAAAAAACAGCGGAGGAAAAGACTCTAGA
CGTGTGGAGAAAGCGAAGTAAGGACGTGGACTTGGTGATCGGTTCCGACA
CAATCGTGGTGTCGGAAGGCAAAATATTGGAGAAGCCCACATCTGAAGCA
GATGCACTTCGCATGCTGAGAAGCTTAAGCGGGAGATGGCACACTGTCGT
CACAGCTGTGGCTCTTGTGTGCAAAGGAGAGCTCAGAAGCTTTTGCGAAG
AGGCAAATGTATGCTTTGACAATCTAACGGATGATATGATCTCTGCGTAT
GTTAAAACCGGTGAACCGATGGACAAGGCAGGAGCATATGGTATCCAAGG
TCGAGGTGGTGCCTTTGTGAAAAAGATCGACGGATGCTACTTTTGTGTTA
TGGGTCTACCGATGAACGCAGTCAGCCGAGAGATTCGGCTGCTTGTTGAA
GACGGTTTGTTGTAA
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protein sequence of Gvermi12170.t1

>Gvermi12170.t1 ID=Gvermi12170.t1|Name=Gvermi12170.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=205bp
MIIDLLPHLRQKRVILASQSPRRREILELIGLDFVSEASSFAEDLDKSSF
ANPNGYAKKTAEEKTLDVWRKRSKDVDLVIGSDTIVVSEGKILEKPTSEA
DALRMLRSLSGRWHTVVTAVALVCKGELRSFCEEANVCFDNLTDDMISAY
VKTGEPMDKAGAYGIQGRGGAFVKKIDGCYFCVMGLPMNAVSREIRLLVE
DGLL*
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mRNA from alignment at ScGOVlb_3404:3656728..3657342-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12170.t1 ID=Gvermi12170.t1|Name=Gvermi12170.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=615bp|location=Sequence derived from alignment at ScGOVlb_3404:3656728..3657342- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCATTGATCTTCTACCGCACCTGAGACAAAAGCGGGTCATTTTGGC
CAGTCAGTCTCCTCGTCGCCGAGAAATTCTTGAACTAATTGGGCTGGATT
TTGTGTCTGAAGCTTCATCTTTCGCAGAAGACTTGGACAAGTCAAGTTTT
GCGAACCCGAACGGCTATGCGAAAAAAACAGCGGAGGAAAAGACTCTAGA
CGTGTGGAGAAAGCGAAGTAAGGACGTGGACTTGGTGATCGGTTCCGACA
CAATCGTGGTGTCGGAAGGCAAAATATTGGAGAAGCCCACATCTGAAGCA
GATGCACTTCGCATGCTGAGAAGCTTAAGCGGGAGATGGCACACTGTCGT
CACAGCTGTGGCTCTTGTGTGCAAAGGAGAGCTCAGAAGCTTTTGCGAAG
AGGCAAATGTATGCTTTGACAATCTAACGGATGATATGATCTCTGCGTAT
GTTAAAACCGGTGAACCGATGGACAAGGCAGGAGCATATGGTATCCAAGG
TCGAGGTGGTGCCTTTGTGAAAAAGATCGACGGATGCTACTTTTGTGTTA
TGGGTCTACCGATGAACGCAGTCAGCCGAGAGATTCGGCTGCTTGTTGAA
GACGGTTTGTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3656728..3657342-

>Gvermi12170.t1 ID=Gvermi12170.t1|Name=Gvermi12170.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=615bp|location=Sequence derived from alignment at ScGOVlb_3404:3656728..3657342- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCATTGATCTTCTACCGCACCTGAGACAAAAGCGGGTCATTTTGGC
CAGTCAGTCTCCTCGTCGCCGAGAAATTCTTGAACTAATTGGGCTGGATT
TTGTGTCTGAAGCTTCATCTTTCGCAGAAGACTTGGACAAGTCAAGTTTT
GCGAACCCGAACGGCTATGCGAAAAAAACAGCGGAGGAAAAGACTCTAGA
CGTGTGGAGAAAGCGAAGTAAGGACGTGGACTTGGTGATCGGTTCCGACA
CAATCGTGGTGTCGGAAGGCAAAATATTGGAGAAGCCCACATCTGAAGCA
GATGCACTTCGCATGCTGAGAAGCTTAAGCGGGAGATGGCACACTGTCGT
CACAGCTGTGGCTCTTGTGTGCAAAGGAGAGCTCAGAAGCTTTTGCGAAG
AGGCAAATGTATGCTTTGACAATCTAACGGATGATATGATCTCTGCGTAT
GTTAAAACCGGTGAACCGATGGACAAGGCAGGAGCATATGGTATCCAAGG
TCGAGGTGGTGCCTTTGTGAAAAAGATCGACGGATGCTACTTTTGTGTTA
TGGGTCTACCGATGAACGCAGTCAGCCGAGAGATTCGGCTGCTTGTTGAA
GACGGTTTGTTGTAA
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