Gvermi12166.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12166.t1
Unique NameGvermi12166.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3648348..3651434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12166Gvermi12166Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3648348..3651434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12166.t1Gvermi12166.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3648348..3651434 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12166.t1.start1Gvermi12166.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3648348..3648350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12166.t1.CDS1Gvermi12166.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3648348..3649457 +
Gvermi12166.t1.CDS2Gvermi12166.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3651420..3651434 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12166.t1.exon1Gvermi12166.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3648348..3649457 +
Gvermi12166.t1.exon2Gvermi12166.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3651420..3651434 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12166.t1.intron1Gvermi12166.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3649458..3651419 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12166.t1.stop1Gvermi12166.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3651432..3651434 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12166.t1 ID=Gvermi12166.t1|Name=Gvermi12166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=375bp
MAAALGHASVLPLLVSALNAFADDLPLVKTLVLLARSLLLHHDPNRAAFC
RLHGLPALAAAMARFPHRQSIQSSAAALIASVCYASPDRRRLACQCNLPS
LLLQLLARFPNPAPATLHANACMALRNLTLEPTVCTLVLDHPDALRSVVA
VIAPRANTSAVEQALGVCLNVLTASDQSTPHPHAAAALQRACPLASAQVA
RFLAATPSDSLRSARCHELAFAVLRACEPLERPRAPPRQRKEWMQLAVAY
ATAYASNRSAHSAAVVSSACLFVRTAVIDADNRALFAQLRRGVPALVRSV
AFLARSPRHVEHALLALGNALFDSPPAKLRACQWGALRAVAAVLDANAAA
PAPVEAALMAVHALCAGCAATQPD*
back to top

spliced messenger RNA

>Gvermi12166.t1 ID=Gvermi12166.t1|Name=Gvermi12166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at ScGOVlb_3404:3648348..3651434+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGCCCTGGGTcacgcctccgtcctcccgctcctcgtctccgc
gctcaacgcCTTCGCCGACGACCTCCCGCTCGTCAAGACCCTCGTCCTGC
TGGCCCGCTCCTTGCTGCTGCACCACGACCCCAACCGCGCCGCCTTCTGC
CGCCTCCACGGGCTCCCCGCCCTGGCCGCCGCCATGGCCCGCTTCCCGCA
CCGCCAGTCCATCCAGTCCTCGGCCGCCGCCCTCATAGCGTCCGTGTGCT
ACGCCAGCCCCGACCGCCGCCGCCTTGCGTGCCAGTGCAACCTGCCGTCG
CTGCTGCTGCAGCTGCTCGCCCGCTTTCCCAACCCCGCCCCGGCCACCCT
GCACGCCAACGCCTGCATGGCCCTGCGCAACCTCACCCTGGAGCCCACCG
TGTGCACCCTCGTCCTGGACCACCCCGACGCCCTGCGCTCCGTCGTCGCC
GTCATCGCCCCGCGTGCCAACACGTCTGCAGTTGAACAGGCGCTGGGCGT
GTGCCTCAACGTCCTCACCGCCTCCGACCAGTCAACCCCGCACCCGCACG
CCGCCGCCGCCTTGCAGCGCGCCTGCCCGCTCGCCTCTGCGCAGGTCGCC
CGCTTCCTCGCCGCCACACCCTCCGACTCGCTGCGCAGCGCCAGGTGCCA
CGAGCTGGCCTTCGCCGTCCTGCGCGCTTGCGAGCCGCTGGAGCGCCCCC
GCGCCCCACCCCGCCAGAGAAAGGAATGGATGCAGCTCGCCGTCGCGTAC
GCCACGGCGTACGCCTCCAACCGCAGCGCCCACTCTGCCGCCGTCGTCTC
CAGCGCGTGCCTCTTCGTGCGCACCGCCGTCATCGACGCCGACAACCGCG
CGCTGTTCGCCCAGCTGCGCCGCGGCGTGCCCGCGCTCGTGCGCAGCGTC
GCCTTCCTCGCGCGCAGCCCGCGCCACGTCGAGCACGCGCTGCTCGCGCT
GGGCAACGCCCTGTTCGACTCGCCGCCCGCCAAGCTGCGCGCGTGCCAGT
GGGGCGCCCTGCGCGCCGTCGCCGCCGTGCTGGACGCCAACGCCGCCGCG
CCCGCCCCCGTCGAGGCCGCGCTCATGGCCGTGCACGCGCTGTGCGCCGG
CTGCGCCGCCACCCAACCCGATTAG
back to top

protein sequence of Gvermi12166.t1

>Gvermi12166.t1 ID=Gvermi12166.t1|Name=Gvermi12166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=375bp
MAAALGHASVLPLLVSALNAFADDLPLVKTLVLLARSLLLHHDPNRAAFC
RLHGLPALAAAMARFPHRQSIQSSAAALIASVCYASPDRRRLACQCNLPS
LLLQLLARFPNPAPATLHANACMALRNLTLEPTVCTLVLDHPDALRSVVA
VIAPRANTSAVEQALGVCLNVLTASDQSTPHPHAAAALQRACPLASAQVA
RFLAATPSDSLRSARCHELAFAVLRACEPLERPRAPPRQRKEWMQLAVAY
ATAYASNRSAHSAAVVSSACLFVRTAVIDADNRALFAQLRRGVPALVRSV
AFLARSPRHVEHALLALGNALFDSPPAKLRACQWGALRAVAAVLDANAAA
PAPVEAALMAVHALCAGCAATQPD*
back to top

mRNA from alignment at ScGOVlb_3404:3648348..3651434+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12166.t1 ID=Gvermi12166.t1|Name=Gvermi12166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3087bp|location=Sequence derived from alignment at ScGOVlb_3404:3648348..3651434+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCGCCCTGGGTcacgcctccgtcctcccgctcctcgtctccgc
gctcaacgcCTTCGCCGACGACCTCCCGCTCGTCAAGACCCTCGTCCTGC
TGGCCCGCTCCTTGCTGCTGCACCACGACCCCAACCGCGCCGCCTTCTGC
CGCCTCCACGGGCTCCCCGCCCTGGCCGCCGCCATGGCCCGCTTCCCGCA
CCGCCAGTCCATCCAGTCCTCGGCCGCCGCCCTCATAGCGTCCGTGTGCT
ACGCCAGCCCCGACCGCCGCCGCCTTGCGTGCCAGTGCAACCTGCCGTCG
CTGCTGCTGCAGCTGCTCGCCCGCTTTCCCAACCCCGCCCCGGCCACCCT
GCACGCCAACGCCTGCATGGCCCTGCGCAACCTCACCCTGGAGCCCACCG
TGTGCACCCTCGTCCTGGACCACCCCGACGCCCTGCGCTCCGTCGTCGCC
GTCATCGCCCCGCGTGCCAACACGTCTGCAGTTGAACAGGCGCTGGGCGT
GTGCCTCAACGTCCTCACCGCCTCCGACCAGTCAACCCCGCACCCGCACG
CCGCCGCCGCCTTGCAGCGCGCCTGCCCGCTCGCCTCTGCGCAGGTCGCC
CGCTTCCTCGCCGCCACACCCTCCGACTCGCTGCGCAGCGCCAGGTGCCA
CGAGCTGGCCTTCGCCGTCCTGCGCGCTTGCGAGCCGCTGGAGCGCCCCC
GCGCCCCACCCCGCCAGAGAAAGGAATGGATGCAGCTCGCCGTCGCGTAC
GCCACGGCGTACGCCTCCAACCGCAGCGCCCACTCTGCCGCCGTCGTCTC
CAGCGCGTGCCTCTTCGTGCGCACCGCCGTCATCGACGCCGACAACCGCG
CGCTGTTCGCCCAGCTGCGCCGCGGCGTGCCCGCGCTCGTGCGCAGCGTC
GCCTTCCTCGCGCGCAGCCCGCGCCACGTCGAGCACGCGCTGCTCGCGCT
GGGCAACGCCCTGTTCGACTCGCCGCCCGCCAAGCTGCGCGCGTGCCAGT
GGGGCGCCCTGCGCGCCGTCGCCGCCGTGCTGGACGCCAACGCCGCCGCG
CCCGCCCCCGTCGAGGCCGCGCTCATGGCCGTGCACGCGCTGTGCGCCGG
CTGCGCCGCCGTCGCCGCGCTCGCCGCCGCGCTCCGCTTCCACCACCGCT
GCGCCGCCGCGCTGCGCCGCTTTGCGCGCTGCTGCCGCATCCAGGAGCGC
GCGCTCGCCGCGCTGCTCAGCCTCGGCGCCGGCCCGCTCGCGCGCCGCCA
CCTCCGCGAGTGCGGCGCGCCGGCCGCCGCCGCGCGCGCTGCGCGAGCCT
TCCCGTACTCCCGCAGCGTGCAGGCGCTCTGCGCAAAGGTGCGCAGCCTG
gacgccgccgacgccgccgacgccgccgacgccgccgacgccgccgacgc
cgccgacgcgcccgcgcccgcgcctgcgcccgcgctgcccgcgggcggcg
ccggccgcgcgggggggcgccagctcgagcgccacgctgcgcgcgACAGC
GACAGCAGGCCGTCGGCGCGCGAGTCGCTTGCCGATAGAATCATTGGTAA
ACTGCCGTCGTCGGCGCACAGAACGCTCAGCAGGCCCGAGTAGCGAGCTT
CGAAACATGCAGTGCGCCTTGCTGCGCTTGTTCACTCCCGTTGGCACGCG
GCTGGCAGCCGATTGCTGCTGCTGCTGCCTTGGTTTGGTTCTTGTGCTTG
CGCTGTCGTGCTGTGCCGCACGTTGCCCTTCGGTGCTGTTTGCTTCGTTG
CTTTCCGCCGAACGATCGTCTCGAGACTTGCGCGTCCGAAAATTGGAGTC
GCAAGACTAACGCCAGTGCAGAGGCAGCTGGGAGGTGGGGGGGCTCCCTC
TTCCGTGTTTTTAAGCGGTGCAGAACGGCACGGCACAGCAAGCGAGGGTT
CTCGTGAGATGGAATGGCCAATGCGGTCGCTGAAATGAATCATTGAGAAT
CAGTATCGATACTGTCTTCTCTTCCTCATATACAGATATTCTTCCAACAC
TTTGTACTGTTATTGTCTTCTCGCTCTCATAAATTGTACAACAAGCAACA
AATGTTgcctaaagagagtgaaaaaagcggtcgaaatgaaagaaagagga
tgaaagttgagagaggtcgttagcaaaatgctgacattcctgggaatgct
gtgaaggtcaaatgccttcgttgcacaactaccctgtggtgaagtgagcg
tgatgcggttggaggcttgcagacaatgattagatgtttcttgagacgca
atgtaggtCTAGCGAGCCAAATCATTACGAGAAATCAGAGGGACGCACTC
TTCAACAAGATGATTATACCACTTTACTGATTCAAGTTGAATAATACGTA
TTCAACTCGAAACAGCGTAATCTTGATTGCAATCTCGGTCGTTACAACTT
ATCAACTGCAGTCGGGATTTTTGATTGGtacagtggtcttcaaaaatata
ccaacggctccggtttcaaagtgtaaacaagttaacgttgatgtatagtt
ctttccagtctcccacttattgacctttcataaaagcttcttcacatatt
tgtttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNattgaggttgtcggatatcatcttaattggtaatatatcaaggaa
cgagtttacgttgggattcataaacgtatactccgattcggagctttttg
tggccgtacgtatacttttggagaccactgtaGAGAGAGATTGCGACAGA
GATTGTGATTTCTGTAATAGATTGCAAACCATACCCACGGGATTGGTTCC
GTGCCTGCATCCGCGAGATAGCGTTGTTGGTATGTTGAGGTTGTAAAAGT
TCTATGCGATGGACAGCTAGGACGTGGCGCATTACGACGATGAAACTACA
GTGAACTATCAACACACTGTGCGTACGGCTTTTTCGCAGTATGGGAGGTT
GTCTTTTAAAAGTTGGCTTACCCGGCAGCCAGGGATGTTCTCCGGCACAT
CGGCCTTGCTCCAATTACGCAGACCCAACCCGATTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3648348..3651434+

>Gvermi12166.t1 ID=Gvermi12166.t1|Name=Gvermi12166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1125bp|location=Sequence derived from alignment at ScGOVlb_3404:3648348..3651434+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCGCCCTGGGTcacgcctccgtcctcccgctcctcgtctccgc
gctcaacgcCTTCGCCGACGACCTCCCGCTCGTCAAGACCCTCGTCCTGC
TGGCCCGCTCCTTGCTGCTGCACCACGACCCCAACCGCGCCGCCTTCTGC
CGCCTCCACGGGCTCCCCGCCCTGGCCGCCGCCATGGCCCGCTTCCCGCA
CCGCCAGTCCATCCAGTCCTCGGCCGCCGCCCTCATAGCGTCCGTGTGCT
ACGCCAGCCCCGACCGCCGCCGCCTTGCGTGCCAGTGCAACCTGCCGTCG
CTGCTGCTGCAGCTGCTCGCCCGCTTTCCCAACCCCGCCCCGGCCACCCT
GCACGCCAACGCCTGCATGGCCCTGCGCAACCTCACCCTGGAGCCCACCG
TGTGCACCCTCGTCCTGGACCACCCCGACGCCCTGCGCTCCGTCGTCGCC
GTCATCGCCCCGCGTGCCAACACGTCTGCAGTTGAACAGGCGCTGGGCGT
GTGCCTCAACGTCCTCACCGCCTCCGACCAGTCAACCCCGCACCCGCACG
CCGCCGCCGCCTTGCAGCGCGCCTGCCCGCTCGCCTCTGCGCAGGTCGCC
CGCTTCCTCGCCGCCACACCCTCCGACTCGCTGCGCAGCGCCAGGTGCCA
CGAGCTGGCCTTCGCCGTCCTGCGCGCTTGCGAGCCGCTGGAGCGCCCCC
GCGCCCCACCCCGCCAGAGAAAGGAATGGATGCAGCTCGCCGTCGCGTAC
GCCACGGCGTACGCCTCCAACCGCAGCGCCCACTCTGCCGCCGTCGTCTC
CAGCGCGTGCCTCTTCGTGCGCACCGCCGTCATCGACGCCGACAACCGCG
CGCTGTTCGCCCAGCTGCGCCGCGGCGTGCCCGCGCTCGTGCGCAGCGTC
GCCTTCCTCGCGCGCAGCCCGCGCCACGTCGAGCACGCGCTGCTCGCGCT
GGGCAACGCCCTGTTCGACTCGCCGCCCGCCAAGCTGCGCGCGTGCCAGT
GGGGCGCCCTGCGCGCCGTCGCCGCCGTGCTGGACGCCAACGCCGCCGCG
CCCGCCCCCGTCGAGGCCGCGCTCATGGCCGTGCACGCGCTGTGCGCCGG
CTGCGCCGCCACCCAACCCGATTAG
back to top