Gvermi12164.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12164.t1
Unique NameGvermi12164.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3644321..3645133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FYM6
Preferred nameTMX2
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K20030
Evalue7.52e-30
EggNOG OGsKOG0914@1|root,KOG0914@2759|Eukaryota
EC2.3.1.225
Descriptionthioredoxin-related transmembrane protein
COG categoryS
BRITEko00000,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12164Gvermi12164Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3644321..3645133 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12164.t1.stop1Gvermi12164.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3644321..3644323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12164.t1.CDS1Gvermi12164.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3644321..3645133 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12164.t1.exon1Gvermi12164.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3644321..3645133 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12164.t1.start1Gvermi12164.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3645131..3645133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12164.t1Gvermi12164.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3644321..3645133 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12164.t1 ID=Gvermi12164.t1|Name=Gvermi12164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=271bp
MIVDSRFLHPYYVLNAALVVAYAALRAKRLDPGELRAEDMFGITREHQIY
FCTALMLITRALSAPTLDAYLASAFMFARVAIAVLLWFMHPHLLALFLAL
WTVLYAVCPQPRFKLPPSVSTLNPVTFNERIARNRHRTVYVLWCHATWSA
RCSQLVPVLASLANAYNHPRIRFARVDVSKFPALSDTLSVSVSPASKQLP
TVICYKQGVEVARIPEMDRRGNLPKKWARGFTAAHVAEALDLNTHLNTAK
QWEQDARQKFRQSQAQKKAN*
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spliced messenger RNA

>Gvermi12164.t1 ID=Gvermi12164.t1|Name=Gvermi12164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_3404:3644321..3645133- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGTCGACAGCAGGTTCCTGCACCCGTACTACGTGCTCAACGCCGC
TCTGGTCGTCGCGTACGCCGCGCTGCGCGCCAAGCGCCTCGACCCCGGCG
AGCTGCGCGCCGAAGACATGTTCGGCATCACGCGCGAGCACCAGATCTAC
TTCTGCACCGCGCTCATGCTCATCACGCGCGCGCTGTCCGCCCCCACGCT
GGACGCCTACCTCGCCTCCGCCTTCATGTTTGCGCGCGTCGCCATCGCCG
TCCTGCTGTGGTTCATGCACCCCCACCTGCTGGCGCTCTTCCTCGCCCTG
TGGACCGTGCTGTACGCCGTGTGCCCGCAGCCGCGCTTCAAGCTGCCCCC
CTCCGTCTCCACCCTCAACCCCGTCACCTTCAACGAGCGCATTGCGCGCA
ACCGCCACCGCACCGTCTACGTCCTGTGGTGCCACGCCACGTGGTCGGCG
CGCTGCTCCCAGCTCGTCCCCGTCCTCGCGTCGCTCGCCAACGCCTACAA
CCACCCGCGCATCCGTTTTGCGCGCGTCGATGTGTCCAAGTTCCCCGCCC
TGTCCGACACCCTCTCCGTCTCCGTGTCCCCGGCCTCCAAGCAGCTGCCC
ACCGTCATCTGCTACAAGCAGGGCGTCGAGGTCGCGCGCATCCCCGAAAT
GGACCGCCGCGGCAACCTCCCCAAAAAGTGGGCCCGCGGCTTCACCGCCG
CCCACGTCGCCGAGGCCCTCGACCTCAACACCCACCTCAACACCGCCAAG
CAGTGGGAGCAGGATGCGCGCCAAAAGTTCCGCCAAAGCCAAGCCCAGAA
GAAGGCCAACTGA
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protein sequence of Gvermi12164.t1

>Gvermi12164.t1 ID=Gvermi12164.t1|Name=Gvermi12164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=271bp
MIVDSRFLHPYYVLNAALVVAYAALRAKRLDPGELRAEDMFGITREHQIY
FCTALMLITRALSAPTLDAYLASAFMFARVAIAVLLWFMHPHLLALFLAL
WTVLYAVCPQPRFKLPPSVSTLNPVTFNERIARNRHRTVYVLWCHATWSA
RCSQLVPVLASLANAYNHPRIRFARVDVSKFPALSDTLSVSVSPASKQLP
TVICYKQGVEVARIPEMDRRGNLPKKWARGFTAAHVAEALDLNTHLNTAK
QWEQDARQKFRQSQAQKKAN*
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mRNA from alignment at ScGOVlb_3404:3644321..3645133-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12164.t1 ID=Gvermi12164.t1|Name=Gvermi12164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_3404:3644321..3645133- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGTCGACAGCAGGTTCCTGCACCCGTACTACGTGCTCAACGCCGC
TCTGGTCGTCGCGTACGCCGCGCTGCGCGCCAAGCGCCTCGACCCCGGCG
AGCTGCGCGCCGAAGACATGTTCGGCATCACGCGCGAGCACCAGATCTAC
TTCTGCACCGCGCTCATGCTCATCACGCGCGCGCTGTCCGCCCCCACGCT
GGACGCCTACCTCGCCTCCGCCTTCATGTTTGCGCGCGTCGCCATCGCCG
TCCTGCTGTGGTTCATGCACCCCCACCTGCTGGCGCTCTTCCTCGCCCTG
TGGACCGTGCTGTACGCCGTGTGCCCGCAGCCGCGCTTCAAGCTGCCCCC
CTCCGTCTCCACCCTCAACCCCGTCACCTTCAACGAGCGCATTGCGCGCA
ACCGCCACCGCACCGTCTACGTCCTGTGGTGCCACGCCACGTGGTCGGCG
CGCTGCTCCCAGCTCGTCCCCGTCCTCGCGTCGCTCGCCAACGCCTACAA
CCACCCGCGCATCCGTTTTGCGCGCGTCGATGTGTCCAAGTTCCCCGCCC
TGTCCGACACCCTCTCCGTCTCCGTGTCCCCGGCCTCCAAGCAGCTGCCC
ACCGTCATCTGCTACAAGCAGGGCGTCGAGGTCGCGCGCATCCCCGAAAT
GGACCGCCGCGGCAACCTCCCCAAAAAGTGGGCCCGCGGCTTCACCGCCG
CCCACGTCGCCGAGGCCCTCGACCTCAACACCCACCTCAACACCGCCAAG
CAGTGGGAGCAGGATGCGCGCCAAAAGTTCCGCCAAAGCCAAGCCCAGAA
GAAGGCCAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3644321..3645133-

>Gvermi12164.t1 ID=Gvermi12164.t1|Name=Gvermi12164.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=813bp|location=Sequence derived from alignment at ScGOVlb_3404:3644321..3645133- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGTCGACAGCAGGTTCCTGCACCCGTACTACGTGCTCAACGCCGC
TCTGGTCGTCGCGTACGCCGCGCTGCGCGCCAAGCGCCTCGACCCCGGCG
AGCTGCGCGCCGAAGACATGTTCGGCATCACGCGCGAGCACCAGATCTAC
TTCTGCACCGCGCTCATGCTCATCACGCGCGCGCTGTCCGCCCCCACGCT
GGACGCCTACCTCGCCTCCGCCTTCATGTTTGCGCGCGTCGCCATCGCCG
TCCTGCTGTGGTTCATGCACCCCCACCTGCTGGCGCTCTTCCTCGCCCTG
TGGACCGTGCTGTACGCCGTGTGCCCGCAGCCGCGCTTCAAGCTGCCCCC
CTCCGTCTCCACCCTCAACCCCGTCACCTTCAACGAGCGCATTGCGCGCA
ACCGCCACCGCACCGTCTACGTCCTGTGGTGCCACGCCACGTGGTCGGCG
CGCTGCTCCCAGCTCGTCCCCGTCCTCGCGTCGCTCGCCAACGCCTACAA
CCACCCGCGCATCCGTTTTGCGCGCGTCGATGTGTCCAAGTTCCCCGCCC
TGTCCGACACCCTCTCCGTCTCCGTGTCCCCGGCCTCCAAGCAGCTGCCC
ACCGTCATCTGCTACAAGCAGGGCGTCGAGGTCGCGCGCATCCCCGAAAT
GGACCGCCGCGGCAACCTCCCCAAAAAGTGGGCCCGCGGCTTCACCGCCG
CCCACGTCGCCGAGGCCCTCGACCTCAACACCCACCTCAACACCGCCAAG
CAGTGGGAGCAGGATGCGCGCCAAAAGTTCCGCCAAAGCCAAGCCCAGAA
GAAGGCCAACTGA
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