Gvermi12163.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12163.t1
Unique Name	Gvermi12163.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	656

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3641921..3643888 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12163	Gvermi12163	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3641921..3643888 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12163.t1.start1	Gvermi12163.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3641921..3641923 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12163.t1.CDS1	Gvermi12163.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3641921..3643888 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12163.t1.exon1	Gvermi12163.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3641921..3643888 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12163.t1.stop1	Gvermi12163.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3643886..3643888 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12163.t1	Gvermi12163.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3641921..3643888 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3641921..3643888+
coding sequence from alignment at ScGOVlb_3404:3641921..3643888+

mRNA sequence

>Gvermi12163.t1 ID=Gvermi12163.t1|Name=Gvermi12163.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=656bp
MGTNPPPTPSFLSRFRRFRNWTANSYSHSTLQLPHAISYPDSVRSTSAPP
SSATSVRGSRHQTPPQVPPNHNNPIPPNITKQPSSAPQRHQTHSSARDTD
GILRKVRDLEAQLPHRSHRFKYNPQGLGQRLLVSARLKNKLETSKIIRMP
YSKSYKYTLVCALLFTGAFLTPQMLPKWIGFEWASPEDLCQSPEAKLVHI
QQQLVNLTSMRQSKHFLQQQQYTLDCMNRSAADFYHGHSGSPPRFLWPHE
CDSEKARVSLNETTCVEQKTNVCKRVNFFARIFASISGDCVQKVAPDLCV
QSTNAERSESLYQLEKERNALQQNISELDTEPIVSTAESKISAVVTRLMT
QIDLAADCFIVYSVVAVMVGIPLVVSKREKTSRVMSATLGLTKMTFVMVF
VILLSLYDSFFLVFQDTDFPRLFQNFLNDPCYVNPAFSSKRVGMIVDMCN
NISLIEQQSDYTLQRMDTVYYDARLFGHCKDDTRELAVHPKLEAMDEIRT
LYREGNISNPGVCNATELDERTSIAPENERASKWKALLGSGVVAQLALKI
IFTSWIIHLLAFMEPMVLHNGKVELWGMKPKMLLTVEDETAIRRFARDKH
LLPLVVFSVLLVVELALFGYSIYTTINGAHEIATLNSTLPLTPAPEWQCP
SSLGM*

spliced messenger RNA

>Gvermi12163.t1 ID=Gvermi12163.t1|Name=Gvermi12163.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1968bp|location=Sequence derived from alignment at ScGOVlb_3404:3641921..3643888+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACAAACCCCCCGCCCACGCCTTCGTTCTTGTCTCGATTCCGCCG
TTTCCGCAATTGGACAGCAAACAGCTACAGCCACAGCACCTTGCAGTTGC
CTCATGCCATTTCGTATCCAGACAGCGTTCGATCGACATCTGCGCCGCCT
TCTTCGGCGACGTCTGTTCGAGGCAGTCGCCACCAAACCCCGCCACAAGT
TCCTCCAAACCACAACAACCCTATTCCCCCAAACATAACTAAGCAACCGT
CCTCAGCCCCCCAACGCCATCAAACGCACAGCAGCGCGCGCGACACGGAT
GGCATACTGCGCAAGGTCCGAGACCTGGAAGCGCAACTGCCGCATCGATC
ACACCGCTTTAAGTACAACCCGCAGGGTCTTGGCCAGCGTCTGCTCGTCA
GTGCGCGCCTCAAGAACAAGCTTGAAACGAGCAAGATCATTCGCATGCCG
TACTCGAAGAGCTACAAGTACACCCTCGTTTGCGCCCTCTTGTTCACGGG
AGCTTTCCTCACCCCGCAAATGCTTCCCAAGTGGATTGGCTTCGAGTGGG
CCTCCCCGGAGGACCTGTGCCAGTCGCCCGAAGCAAAGCTCGTGCACATC
CAGCAACAGCTCGTCAATCTCACCTCCATGCGCCAGTCAAAACACTTTCT
GCAGCAGCAGCAGTACACGCTCGACTGCATGAACCGCTCGGCAGCCGATT
TCTACCACGGCCACAGCGGCAGCCCGCCCCGATTCCTGTGGCCGCACGAG
TGCGACAGCGAAAAGGCCAGAGTGTCGCTCAACGAAACAACGTGCGTCGA
GCAGAAGACCAACGTGTGCAAGCGCGTCAACTTCTTTGCGCGCATCTTCG
CCTCCATCAGCGGCGACTGCGTGCAGAAGGTCGCCCCGGACCTGTGCGTG
CAGAGCACCAACGCAGAGCGCTCCGAGTCGCTGTACCAGCTGGAGAAGGA
GCGCAACGCCCTGCAGCAGAACATCTCCGAGCTGGACACGGAGCCGATCG
TGTCCACGGCCGAGTCCAAAATCAGCGCCGTGGTCACGCGCCTCATGACG
CAGATCGACCTCGCGGCCGACTGCTTCATCGTGTACAGCGTGGTGGCCGT
CATGGTCGGCATCCCGCTCGTCGTCTCCAAGCGCGAGAAGACGTCGCGCG
TGATGAGCGCCACGCTCGGGCTGACCAAGATGACGTTTGTGATGGTGTTT
GTCATCCTGCTGTCGCTGTACGACTCGTTCTTCCTCGTGTTCCAGGACAC
GGACTTTCCGCGCCTGTTCCAGAACTTTTTGAACGACCCGTGCTACGTCA
ACCCCGCGTTTTCGTCCAAGAGGGTGGGCATGATAGTGGACATGTGCAAT
AACATTTCGCTCATCGAGCAGCAGAGTGATTACACGCTGCAAAGAATGGA
CACCGTCTACTACGACGCACGGCTGTTTGGACACTGCAAAGACGACACGC
GGGAGCTGGCCGTACACCCCAAGCTGGAGGCGATGGACGAGATTCGCACG
CTGTACAGGGAAGGGAACATTTCGAACCCCGGGGTGTGCAACGCAACAGA
ACTCGATGAGCGCACGTCGATCGCGCCGGAAAACGAGCGCGCCTCAAAGT
GGAAGGCGCTTCTCGGCAGCGGCGTGGTGGCGCAACTGGCGCTCAAAATC
ATCTTCACCAGCTGGATCATACACCTGCTGGCGTTCATGGAACCCATGGT
GCTGCACAACGGCAAAGTGGAGCTGTGGGGCATGAAGCCCAAGATGCTTT
TGACGGTGGAAGACGAGACGGCCATCAGACGGTTTGCCAGAGACAAGCAT
TTACTGCCGCTGGTGGTTTTCAGCGTTTTGCTCGTTGTGGAACTGGCGCT
GTTCGGGTACAGCATATATACAACTATCAATGGTGCGCACGAAATCGCGA
CTCTCAATTCAACACTGCCGCTGACTCCGGCACCAGAGTGGCAATGCCCG
TCGTCCCTTGGAATGTAA

protein sequence of Gvermi12163.t1

>Gvermi12163.t1 ID=Gvermi12163.t1|Name=Gvermi12163.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=656bp
MGTNPPPTPSFLSRFRRFRNWTANSYSHSTLQLPHAISYPDSVRSTSAPP
SSATSVRGSRHQTPPQVPPNHNNPIPPNITKQPSSAPQRHQTHSSARDTD
GILRKVRDLEAQLPHRSHRFKYNPQGLGQRLLVSARLKNKLETSKIIRMP
YSKSYKYTLVCALLFTGAFLTPQMLPKWIGFEWASPEDLCQSPEAKLVHI
QQQLVNLTSMRQSKHFLQQQQYTLDCMNRSAADFYHGHSGSPPRFLWPHE
CDSEKARVSLNETTCVEQKTNVCKRVNFFARIFASISGDCVQKVAPDLCV
QSTNAERSESLYQLEKERNALQQNISELDTEPIVSTAESKISAVVTRLMT
QIDLAADCFIVYSVVAVMVGIPLVVSKREKTSRVMSATLGLTKMTFVMVF
VILLSLYDSFFLVFQDTDFPRLFQNFLNDPCYVNPAFSSKRVGMIVDMCN
NISLIEQQSDYTLQRMDTVYYDARLFGHCKDDTRELAVHPKLEAMDEIRT
LYREGNISNPGVCNATELDERTSIAPENERASKWKALLGSGVVAQLALKI
IFTSWIIHLLAFMEPMVLHNGKVELWGMKPKMLLTVEDETAIRRFARDKH
LLPLVVFSVLLVVELALFGYSIYTTINGAHEIATLNSTLPLTPAPEWQCP
SSLGM*

mRNA from alignment at ScGOVlb_3404:3641921..3643888+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12163.t1 ID=Gvermi12163.t1|Name=Gvermi12163.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1968bp|location=Sequence derived from alignment at ScGOVlb_3404:3641921..3643888+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCACAAACCCCCCGCCCACGCCTTCGTTCTTGTCTCGATTCCGCCG
TTTCCGCAATTGGACAGCAAACAGCTACAGCCACAGCACCTTGCAGTTGC
CTCATGCCATTTCGTATCCAGACAGCGTTCGATCGACATCTGCGCCGCCT
TCTTCGGCGACGTCTGTTCGAGGCAGTCGCCACCAAACCCCGCCACAAGT
TCCTCCAAACCACAACAACCCTATTCCCCCAAACATAACTAAGCAACCGT
CCTCAGCCCCCCAACGCCATCAAACGCACAGCAGCGCGCGCGACACGGAT
GGCATACTGCGCAAGGTCCGAGACCTGGAAGCGCAACTGCCGCATCGATC
ACACCGCTTTAAGTACAACCCGCAGGGTCTTGGCCAGCGTCTGCTCGTCA
GTGCGCGCCTCAAGAACAAGCTTGAAACGAGCAAGATCATTCGCATGCCG
TACTCGAAGAGCTACAAGTACACCCTCGTTTGCGCCCTCTTGTTCACGGG
AGCTTTCCTCACCCCGCAAATGCTTCCCAAGTGGATTGGCTTCGAGTGGG
CCTCCCCGGAGGACCTGTGCCAGTCGCCCGAAGCAAAGCTCGTGCACATC
CAGCAACAGCTCGTCAATCTCACCTCCATGCGCCAGTCAAAACACTTTCT
GCAGCAGCAGCAGTACACGCTCGACTGCATGAACCGCTCGGCAGCCGATT
TCTACCACGGCCACAGCGGCAGCCCGCCCCGATTCCTGTGGCCGCACGAG
TGCGACAGCGAAAAGGCCAGAGTGTCGCTCAACGAAACAACGTGCGTCGA
GCAGAAGACCAACGTGTGCAAGCGCGTCAACTTCTTTGCGCGCATCTTCG
CCTCCATCAGCGGCGACTGCGTGCAGAAGGTCGCCCCGGACCTGTGCGTG
CAGAGCACCAACGCAGAGCGCTCCGAGTCGCTGTACCAGCTGGAGAAGGA
GCGCAACGCCCTGCAGCAGAACATCTCCGAGCTGGACACGGAGCCGATCG
TGTCCACGGCCGAGTCCAAAATCAGCGCCGTGGTCACGCGCCTCATGACG
CAGATCGACCTCGCGGCCGACTGCTTCATCGTGTACAGCGTGGTGGCCGT
CATGGTCGGCATCCCGCTCGTCGTCTCCAAGCGCGAGAAGACGTCGCGCG
TGATGAGCGCCACGCTCGGGCTGACCAAGATGACGTTTGTGATGGTGTTT
GTCATCCTGCTGTCGCTGTACGACTCGTTCTTCCTCGTGTTCCAGGACAC
GGACTTTCCGCGCCTGTTCCAGAACTTTTTGAACGACCCGTGCTACGTCA
ACCCCGCGTTTTCGTCCAAGAGGGTGGGCATGATAGTGGACATGTGCAAT
AACATTTCGCTCATCGAGCAGCAGAGTGATTACACGCTGCAAAGAATGGA
CACCGTCTACTACGACGCACGGCTGTTTGGACACTGCAAAGACGACACGC
GGGAGCTGGCCGTACACCCCAAGCTGGAGGCGATGGACGAGATTCGCACG
CTGTACAGGGAAGGGAACATTTCGAACCCCGGGGTGTGCAACGCAACAGA
ACTCGATGAGCGCACGTCGATCGCGCCGGAAAACGAGCGCGCCTCAAAGT
GGAAGGCGCTTCTCGGCAGCGGCGTGGTGGCGCAACTGGCGCTCAAAATC
ATCTTCACCAGCTGGATCATACACCTGCTGGCGTTCATGGAACCCATGGT
GCTGCACAACGGCAAAGTGGAGCTGTGGGGCATGAAGCCCAAGATGCTTT
TGACGGTGGAAGACGAGACGGCCATCAGACGGTTTGCCAGAGACAAGCAT
TTACTGCCGCTGGTGGTTTTCAGCGTTTTGCTCGTTGTGGAACTGGCGCT
GTTCGGGTACAGCATATATACAACTATCAATGGTGCGCACGAAATCGCGA
CTCTCAATTCAACACTGCCGCTGACTCCGGCACCAGAGTGGCAATGCCCG
TCGTCCCTTGGAATGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3641921..3643888+

>Gvermi12163.t1 ID=Gvermi12163.t1|Name=Gvermi12163.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1968bp|location=Sequence derived from alignment at ScGOVlb_3404:3641921..3643888+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCACAAACCCCCCGCCCACGCCTTCGTTCTTGTCTCGATTCCGCCG
TTTCCGCAATTGGACAGCAAACAGCTACAGCCACAGCACCTTGCAGTTGC
CTCATGCCATTTCGTATCCAGACAGCGTTCGATCGACATCTGCGCCGCCT
TCTTCGGCGACGTCTGTTCGAGGCAGTCGCCACCAAACCCCGCCACAAGT
TCCTCCAAACCACAACAACCCTATTCCCCCAAACATAACTAAGCAACCGT
CCTCAGCCCCCCAACGCCATCAAACGCACAGCAGCGCGCGCGACACGGAT
GGCATACTGCGCAAGGTCCGAGACCTGGAAGCGCAACTGCCGCATCGATC
ACACCGCTTTAAGTACAACCCGCAGGGTCTTGGCCAGCGTCTGCTCGTCA
GTGCGCGCCTCAAGAACAAGCTTGAAACGAGCAAGATCATTCGCATGCCG
TACTCGAAGAGCTACAAGTACACCCTCGTTTGCGCCCTCTTGTTCACGGG
AGCTTTCCTCACCCCGCAAATGCTTCCCAAGTGGATTGGCTTCGAGTGGG
CCTCCCCGGAGGACCTGTGCCAGTCGCCCGAAGCAAAGCTCGTGCACATC
CAGCAACAGCTCGTCAATCTCACCTCCATGCGCCAGTCAAAACACTTTCT
GCAGCAGCAGCAGTACACGCTCGACTGCATGAACCGCTCGGCAGCCGATT
TCTACCACGGCCACAGCGGCAGCCCGCCCCGATTCCTGTGGCCGCACGAG
TGCGACAGCGAAAAGGCCAGAGTGTCGCTCAACGAAACAACGTGCGTCGA
GCAGAAGACCAACGTGTGCAAGCGCGTCAACTTCTTTGCGCGCATCTTCG
CCTCCATCAGCGGCGACTGCGTGCAGAAGGTCGCCCCGGACCTGTGCGTG
CAGAGCACCAACGCAGAGCGCTCCGAGTCGCTGTACCAGCTGGAGAAGGA
GCGCAACGCCCTGCAGCAGAACATCTCCGAGCTGGACACGGAGCCGATCG
TGTCCACGGCCGAGTCCAAAATCAGCGCCGTGGTCACGCGCCTCATGACG
CAGATCGACCTCGCGGCCGACTGCTTCATCGTGTACAGCGTGGTGGCCGT
CATGGTCGGCATCCCGCTCGTCGTCTCCAAGCGCGAGAAGACGTCGCGCG
TGATGAGCGCCACGCTCGGGCTGACCAAGATGACGTTTGTGATGGTGTTT
GTCATCCTGCTGTCGCTGTACGACTCGTTCTTCCTCGTGTTCCAGGACAC
GGACTTTCCGCGCCTGTTCCAGAACTTTTTGAACGACCCGTGCTACGTCA
ACCCCGCGTTTTCGTCCAAGAGGGTGGGCATGATAGTGGACATGTGCAAT
AACATTTCGCTCATCGAGCAGCAGAGTGATTACACGCTGCAAAGAATGGA
CACCGTCTACTACGACGCACGGCTGTTTGGACACTGCAAAGACGACACGC
GGGAGCTGGCCGTACACCCCAAGCTGGAGGCGATGGACGAGATTCGCACG
CTGTACAGGGAAGGGAACATTTCGAACCCCGGGGTGTGCAACGCAACAGA
ACTCGATGAGCGCACGTCGATCGCGCCGGAAAACGAGCGCGCCTCAAAGT
GGAAGGCGCTTCTCGGCAGCGGCGTGGTGGCGCAACTGGCGCTCAAAATC
ATCTTCACCAGCTGGATCATACACCTGCTGGCGTTCATGGAACCCATGGT
GCTGCACAACGGCAAAGTGGAGCTGTGGGGCATGAAGCCCAAGATGCTTT
TGACGGTGGAAGACGAGACGGCCATCAGACGGTTTGCCAGAGACAAGCAT
TTACTGCCGCTGGTGGTTTTCAGCGTTTTGCTCGTTGTGGAACTGGCGCT
GTTCGGGTACAGCATATATACAACTATCAATGGTGCGCACGAAATCGCGA
CTCTCAATTCAACACTGCCGCTGACTCCGGCACCAGAGTGGCAATGCCCG
TCGTCCCTTGGAATGTAA