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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 109760.SPPG_08087T1 |
| PFAMs | Helicase_C,SNF2_N |
| Max annot lvl | 4751|Fungi |
| Evalue | 1.09e-122 |
| EggNOG OGs | COG0553@1|root,KOG1000@2759|Eukaryota,38C05@33154|Opisthokonta,3PBVX@4751|Fungi |
| Description | SNF2 family N-terminal domain |
| COG category | A |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi12160.t1 ID=Gvermi12160.t1|Name=Gvermi12160.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=910bp MAPATSASNDTTRGNQARNEALHQPGAHHVPNPAQQLINVDRSPLPGGVP GVANVPNCRCGSAAARRTVRKDGRNKGRSFYACPKPVGQQCGFFEWDTNA GNTNAEQGRNPPSERVHSQNAPHSSAKPNPGAAHGIPQAKDTESEDTPKC SCGLQAVDYTVKKQGPNHGRKFFTCPKSREMRCRFFQWVEEAGRKRPATS IHHDSSDAASCPPSKRAKQKSGDLIEIHMEEIDSFKFTMYPRFSASLKDA IKQYEGLRIEKSEKLGAEEVTVPLETLQHFESYVTASAGALVKRDISDDL LRRIMKYFEKESERQKRDLIRAPLDEILPSIVCDKLMQFQWEGVNFALKR GGRCLIGDDMGLGKTLQAIAVARIYMTNWPLLIICPSSLRLNWKEELLNW LSSDLEEDDILVMMTGKDTEKKVRRVNIVSYDLVRKIPRASVSKCHFIIA DESHYLKSGTAKRTQAVVPMLKTAKRAILLSGTPALSRPVELFSQVNAIA PDLFPNYHEYVQRYCNAHYGFFGYDVSGASNLQELNVLLRGSILIRRKKE DVLTQLPDKQRQVIWVQTKSKIMKDVSSVTDKLSAARQALNSAANETQAM SLQMAVRSAQNELYSLTGQAKLDSVLEFCRDTSESGCKFIVFAHHALVMD PVHDYVTKKLKLDAIRIDGNTKQESRQSLCSRFQNDPKCKVAVLSITAAG VGITLTEAKVVLFAELYWNPGSLLQAEDRAHRIGQRDCVLVQYLLAKNTI DVSMWGTVRKKLHVVGHSLTGTAGRMEVGKEQNDKGNGDTRDLESYFKKM PKDKRRREVEDTEDDIEDDVGAILTEDIGSPPSATQTPTQNRKPSARSDA YGSSSIFFPTRMDELEPNPCEDINGWHARGDKTGAVQRRIDADRALAEKL QAEFNKEPL* back to topspliced messenger RNA >Gvermi12160.t1 ID=Gvermi12160.t1|Name=Gvermi12160.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2730bp|location=Sequence derived from alignment at ScGOVlb_3404:3628017..3630746- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCCCAGCGACTTCGGCATCCAATGACACAACTCGAGGCAATCAGGC TCGAAACGAAGCTCTCCACCAGCCAGGCGCCCATCATGTACCCAATCCCG CGCAGCAACTGATTAATGTTGACCGCAGCCCGCTCCCCGGTGGTGTCCCA GGCGTCGCTAATGTTCCGAATTGCCGCTGTGGCTCGGCAGCTGCACGGCG CACCGTTCGCAAGGATGGCAGGAATAAGGGCAGGTCCTTTTATGCATGCC CCAAGCCCGTCGGGCAGCAGTGTGGCTTTTTCGAGTGGGATACTAATGCG GGGAACACCAATGCGGAACAAGGCCGAAATCCACCGTCTGAACGCGTTCA CTCGCAAAACGCCCCACACAGTTCCGCCAAACCAAATCCGGGTGCCGCTC ATGGTATACCGCAAGCAAAAGACACAGAATCAGAAGACACACCCAAGTGC TCATGTGGTCTCCAAGCTGTAGATTATACCGTGAAGAAGCAGGGTCCGAA TCATGGCAGAAAGTTCTTCACTTGCCCAAAGTCGCGGGAAATGAGGTGTC GGTTCTTCCAGTGGGTAGAGGAGGCTGGACGGAAACGGCCGGCTACTTCC ATCCATCACGATTCGTCGGACGCCGCTTCCTGTCCGCCCTCGAAGAGGGC GAAGCAAAAATCAGGAGACCTCATTGAGATACACATGGAGGAAATTGATA GTTTCAAGTTTACAATGTATCCCAGATTCTCGGCCAGTTTGAAGGACGCA ATCAAACAGTATGAAGGTTTAAGGATTGAAAAAAGCGAAAAGCTTGGAGC CGAAGAGGTCACTGTCCCTTTGGAGACGTTGCAACATTTTGAGAGTTACG TCACCGCTTCCGCCGGAGCACTCGTGAAGCGGGACATCAGCGACGATCTT CTACGCCGTATAATGAAGTATTTCGAGAAAGAGAGTGAAAGGCAGAAACG CGATTTGATCAGGGCCCCACTTGACGAGATTCTCCCGTCCATTGTATGTG ACAAACTCATGCAGTTTCAGTGGGAGGGGGTAAATTTTGCGCTGAAGCGA GGTGGTCGTTGTCTCATTGGAGATGACATGGGACTCGGCAAGACTCTACA AGCCATAGCCGTCGCTCGCATCTACATGACCAACTGGCCTCTTCTCATCA TCTGCCCGAGTTCTTTGCGTCTCAATTGGAAAGAGGAACTTTTGAACTGG TTAAGCAGTGACCTTGAGGAAGACGACATCCTAGTGATGATGACAGGCAA GGACACCGAGAAGAAAGTACGCCGTGTGAACATTGTCTCATATGATCTCG TGCGCAAAATCCCTCGAGCATCTGTATCCAAGTGTCACTTTATCATTGCA GACGAGTCTCACTATCTGAAATCCGGAACTGCGAAACGAACTCAAGCAGT GGTCCCTATGCTGAAGACGGCAAAGCGAGCAATACTTCTCTCTGGAACGC CGGCGTTATCAAGACCAGTTGAACTATTCTCACAAGTCAACGCAATTGCA CCGGATTTATTCCCAAACTATCATGAGTATGTTCAACGGTATTGCAATGC ACACTATGGGTTTTTTGGATACGACGTGTCGGGCGCTTCCAATCTTCAAG AGCTCAACGTCCTATTGAGGGGTAGCATCCTCATTAGACGGAAAAAGGAA GATGTACTAACGCAATTACCCGACAAGCAAAGGCAAGTAATCTGGGTGCA GACGAAATCCAAAATTATGAAGGACGTTTCATCTGTTACCGACAAACTTT CCGCAGCAAGACAGGCTTTGAATTCAGCTGCTAATGAAACGCAAGCGATG TCGTTACAAATGGCGGTAAGGTCTGCGCAGAACGAGCTGTACTCGCTAAC TGGTCAGGCAAAGTTGGATTCCGTCCTTGAATTTTGTCGTGATACCTCCG AGTCTGGATGCAAGTTTATAGTTTTTGCGCATCATGCACTGGTCATGGAC CCTGTTCACGATTATGTCACGAAGAAGCTCAAACTTGATGCAATTCGTAT CGACGGAAATACAAAACAGGAAAGTCGACAGTCTCTTTGTTCGAGGTTTC AGAACGACCCAAAGTGCAAAGTCGCGGTGCTCTCAATAACCGCAGCTGGG GTGGGTATCACGTTAACCGAAGCCAAAGTAGTGCTTTTCGCAGAACTGTA TTGGAACCCAGGGAGCCTTCTTCAGGCTGAGGATCGAGCCCATAGAATTG GTCAAAGAGATTGTGTCCTGGTGCAATACTTGCTAGCAAAGAACACTATT GATGTGTCCATGTGGGGAACCGTTCGGAAGAAACTGCACGTCGTTGGTCA CTCTTTGACAGGGACCGCCGGTCGCATGGAGGTCGGCAAGGAACAGAATG ACAAGGGGAATGGAGACACGAGAGACTTAGAATCTTATTTTAAGAAGATG CCAAAAGACAAGCGTAGAAGGGAAGTGGAGGACACAGAAGATGACATTGA GGACGACGTAGGTGCAATTCTTACTGAAGATATCGGAAGCCCTCCCTCAG CAACACAAACACCTACACAAAATCGAAAACCCAGCGCCCGTAGCGACGCC TATGGATCCTCGTCGATATTTTTCCCCACGCGAATGGATGAGCTCGAACC AAACCCATGCGAAGACATTAATGGTTGGCATGCCAGAGGCGATAAAACTG GAGCTGTGCAAAGACGAATAGACGCTGATCGTGCACTGGCCGAAAAGCTG CAAGCGGAGTTCAACAAGGAGCCCCTGTGA back to topprotein sequence of Gvermi12160.t1 >Gvermi12160.t1 ID=Gvermi12160.t1|Name=Gvermi12160.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=910bp
MAPATSASNDTTRGNQARNEALHQPGAHHVPNPAQQLINVDRSPLPGGVP GVANVPNCRCGSAAARRTVRKDGRNKGRSFYACPKPVGQQCGFFEWDTNA GNTNAEQGRNPPSERVHSQNAPHSSAKPNPGAAHGIPQAKDTESEDTPKC SCGLQAVDYTVKKQGPNHGRKFFTCPKSREMRCRFFQWVEEAGRKRPATS IHHDSSDAASCPPSKRAKQKSGDLIEIHMEEIDSFKFTMYPRFSASLKDA IKQYEGLRIEKSEKLGAEEVTVPLETLQHFESYVTASAGALVKRDISDDL LRRIMKYFEKESERQKRDLIRAPLDEILPSIVCDKLMQFQWEGVNFALKR GGRCLIGDDMGLGKTLQAIAVARIYMTNWPLLIICPSSLRLNWKEELLNW LSSDLEEDDILVMMTGKDTEKKVRRVNIVSYDLVRKIPRASVSKCHFIIA DESHYLKSGTAKRTQAVVPMLKTAKRAILLSGTPALSRPVELFSQVNAIA PDLFPNYHEYVQRYCNAHYGFFGYDVSGASNLQELNVLLRGSILIRRKKE DVLTQLPDKQRQVIWVQTKSKIMKDVSSVTDKLSAARQALNSAANETQAM SLQMAVRSAQNELYSLTGQAKLDSVLEFCRDTSESGCKFIVFAHHALVMD PVHDYVTKKLKLDAIRIDGNTKQESRQSLCSRFQNDPKCKVAVLSITAAG VGITLTEAKVVLFAELYWNPGSLLQAEDRAHRIGQRDCVLVQYLLAKNTI DVSMWGTVRKKLHVVGHSLTGTAGRMEVGKEQNDKGNGDTRDLESYFKKM PKDKRRREVEDTEDDIEDDVGAILTEDIGSPPSATQTPTQNRKPSARSDA YGSSSIFFPTRMDELEPNPCEDINGWHARGDKTGAVQRRIDADRALAEKL QAEFNKEPL* back to topmRNA from alignment at ScGOVlb_3404:3628017..3630746- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi12160.t1 ID=Gvermi12160.t1|Name=Gvermi12160.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2730bp|location=Sequence derived from alignment at ScGOVlb_3404:3628017..3630746- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCCCAGCGACTTCGGCATCCAATGACACAACTCGAGGCAATCAGGC
TCGAAACGAAGCTCTCCACCAGCCAGGCGCCCATCATGTACCCAATCCCG
CGCAGCAACTGATTAATGTTGACCGCAGCCCGCTCCCCGGTGGTGTCCCA
GGCGTCGCTAATGTTCCGAATTGCCGCTGTGGCTCGGCAGCTGCACGGCG
CACCGTTCGCAAGGATGGCAGGAATAAGGGCAGGTCCTTTTATGCATGCC
CCAAGCCCGTCGGGCAGCAGTGTGGCTTTTTCGAGTGGGATACTAATGCG
GGGAACACCAATGCGGAACAAGGCCGAAATCCACCGTCTGAACGCGTTCA
CTCGCAAAACGCCCCACACAGTTCCGCCAAACCAAATCCGGGTGCCGCTC
ATGGTATACCGCAAGCAAAAGACACAGAATCAGAAGACACACCCAAGTGC
TCATGTGGTCTCCAAGCTGTAGATTATACCGTGAAGAAGCAGGGTCCGAA
TCATGGCAGAAAGTTCTTCACTTGCCCAAAGTCGCGGGAAATGAGGTGTC
GGTTCTTCCAGTGGGTAGAGGAGGCTGGACGGAAACGGCCGGCTACTTCC
ATCCATCACGATTCGTCGGACGCCGCTTCCTGTCCGCCCTCGAAGAGGGC
GAAGCAAAAATCAGGAGACCTCATTGAGATACACATGGAGGAAATTGATA
GTTTCAAGTTTACAATGTATCCCAGATTCTCGGCCAGTTTGAAGGACGCA
ATCAAACAGTATGAAGGTTTAAGGATTGAAAAAAGCGAAAAGCTTGGAGC
CGAAGAGGTCACTGTCCCTTTGGAGACGTTGCAACATTTTGAGAGTTACG
TCACCGCTTCCGCCGGAGCACTCGTGAAGCGGGACATCAGCGACGATCTT
CTACGCCGTATAATGAAGTATTTCGAGAAAGAGAGTGAAAGGCAGAAACG
CGATTTGATCAGGGCCCCACTTGACGAGATTCTCCCGTCCATTGTATGTG
ACAAACTCATGCAGTTTCAGTGGGAGGGGGTAAATTTTGCGCTGAAGCGA
GGTGGTCGTTGTCTCATTGGAGATGACATGGGACTCGGCAAGACTCTACA
AGCCATAGCCGTCGCTCGCATCTACATGACCAACTGGCCTCTTCTCATCA
TCTGCCCGAGTTCTTTGCGTCTCAATTGGAAAGAGGAACTTTTGAACTGG
TTAAGCAGTGACCTTGAGGAAGACGACATCCTAGTGATGATGACAGGCAA
GGACACCGAGAAGAAAGTACGCCGTGTGAACATTGTCTCATATGATCTCG
TGCGCAAAATCCCTCGAGCATCTGTATCCAAGTGTCACTTTATCATTGCA
GACGAGTCTCACTATCTGAAATCCGGAACTGCGAAACGAACTCAAGCAGT
GGTCCCTATGCTGAAGACGGCAAAGCGAGCAATACTTCTCTCTGGAACGC
CGGCGTTATCAAGACCAGTTGAACTATTCTCACAAGTCAACGCAATTGCA
CCGGATTTATTCCCAAACTATCATGAGTATGTTCAACGGTATTGCAATGC
ACACTATGGGTTTTTTGGATACGACGTGTCGGGCGCTTCCAATCTTCAAG
AGCTCAACGTCCTATTGAGGGGTAGCATCCTCATTAGACGGAAAAAGGAA
GATGTACTAACGCAATTACCCGACAAGCAAAGGCAAGTAATCTGGGTGCA
GACGAAATCCAAAATTATGAAGGACGTTTCATCTGTTACCGACAAACTTT
CCGCAGCAAGACAGGCTTTGAATTCAGCTGCTAATGAAACGCAAGCGATG
TCGTTACAAATGGCGGTAAGGTCTGCGCAGAACGAGCTGTACTCGCTAAC
TGGTCAGGCAAAGTTGGATTCCGTCCTTGAATTTTGTCGTGATACCTCCG
AGTCTGGATGCAAGTTTATAGTTTTTGCGCATCATGCACTGGTCATGGAC
CCTGTTCACGATTATGTCACGAAGAAGCTCAAACTTGATGCAATTCGTAT
CGACGGAAATACAAAACAGGAAAGTCGACAGTCTCTTTGTTCGAGGTTTC
AGAACGACCCAAAGTGCAAAGTCGCGGTGCTCTCAATAACCGCAGCTGGG
GTGGGTATCACGTTAACCGAAGCCAAAGTAGTGCTTTTCGCAGAACTGTA
TTGGAACCCAGGGAGCCTTCTTCAGGCTGAGGATCGAGCCCATAGAATTG
GTCAAAGAGATTGTGTCCTGGTGCAATACTTGCTAGCAAAGAACACTATT
GATGTGTCCATGTGGGGAACCGTTCGGAAGAAACTGCACGTCGTTGGTCA
CTCTTTGACAGGGACCGCCGGTCGCATGGAGGTCGGCAAGGAACAGAATG
ACAAGGGGAATGGAGACACGAGAGACTTAGAATCTTATTTTAAGAAGATG
CCAAAAGACAAGCGTAGAAGGGAAGTGGAGGACACAGAAGATGACATTGA
GGACGACGTAGGTGCAATTCTTACTGAAGATATCGGAAGCCCTCCCTCAG
CAACACAAACACCTACACAAAATCGAAAACCCAGCGCCCGTAGCGACGCC
TATGGATCCTCGTCGATATTTTTCCCCACGCGAATGGATGAGCTCGAACC
AAACCCATGCGAAGACATTAATGGTTGGCATGCCAGAGGCGATAAAACTG
GAGCTGTGCAAAGACGAATAGACGCTGATCGTGCACTGGCCGAAAAGCTG
CAAGCGGAGTTCAACAAGGAGCCCCTGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:3628017..3630746- >Gvermi12160.t1 ID=Gvermi12160.t1|Name=Gvermi12160.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2730bp|location=Sequence derived from alignment at ScGOVlb_3404:3628017..3630746- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCCCAGCGACTTCGGCATCCAATGACACAACTCGAGGCAATCAGGC TCGAAACGAAGCTCTCCACCAGCCAGGCGCCCATCATGTACCCAATCCCG CGCAGCAACTGATTAATGTTGACCGCAGCCCGCTCCCCGGTGGTGTCCCA GGCGTCGCTAATGTTCCGAATTGCCGCTGTGGCTCGGCAGCTGCACGGCG CACCGTTCGCAAGGATGGCAGGAATAAGGGCAGGTCCTTTTATGCATGCC CCAAGCCCGTCGGGCAGCAGTGTGGCTTTTTCGAGTGGGATACTAATGCG GGGAACACCAATGCGGAACAAGGCCGAAATCCACCGTCTGAACGCGTTCA CTCGCAAAACGCCCCACACAGTTCCGCCAAACCAAATCCGGGTGCCGCTC ATGGTATACCGCAAGCAAAAGACACAGAATCAGAAGACACACCCAAGTGC TCATGTGGTCTCCAAGCTGTAGATTATACCGTGAAGAAGCAGGGTCCGAA TCATGGCAGAAAGTTCTTCACTTGCCCAAAGTCGCGGGAAATGAGGTGTC GGTTCTTCCAGTGGGTAGAGGAGGCTGGACGGAAACGGCCGGCTACTTCC ATCCATCACGATTCGTCGGACGCCGCTTCCTGTCCGCCCTCGAAGAGGGC GAAGCAAAAATCAGGAGACCTCATTGAGATACACATGGAGGAAATTGATA GTTTCAAGTTTACAATGTATCCCAGATTCTCGGCCAGTTTGAAGGACGCA ATCAAACAGTATGAAGGTTTAAGGATTGAAAAAAGCGAAAAGCTTGGAGC CGAAGAGGTCACTGTCCCTTTGGAGACGTTGCAACATTTTGAGAGTTACG TCACCGCTTCCGCCGGAGCACTCGTGAAGCGGGACATCAGCGACGATCTT CTACGCCGTATAATGAAGTATTTCGAGAAAGAGAGTGAAAGGCAGAAACG CGATTTGATCAGGGCCCCACTTGACGAGATTCTCCCGTCCATTGTATGTG ACAAACTCATGCAGTTTCAGTGGGAGGGGGTAAATTTTGCGCTGAAGCGA GGTGGTCGTTGTCTCATTGGAGATGACATGGGACTCGGCAAGACTCTACA AGCCATAGCCGTCGCTCGCATCTACATGACCAACTGGCCTCTTCTCATCA TCTGCCCGAGTTCTTTGCGTCTCAATTGGAAAGAGGAACTTTTGAACTGG TTAAGCAGTGACCTTGAGGAAGACGACATCCTAGTGATGATGACAGGCAA GGACACCGAGAAGAAAGTACGCCGTGTGAACATTGTCTCATATGATCTCG TGCGCAAAATCCCTCGAGCATCTGTATCCAAGTGTCACTTTATCATTGCA GACGAGTCTCACTATCTGAAATCCGGAACTGCGAAACGAACTCAAGCAGT GGTCCCTATGCTGAAGACGGCAAAGCGAGCAATACTTCTCTCTGGAACGC CGGCGTTATCAAGACCAGTTGAACTATTCTCACAAGTCAACGCAATTGCA CCGGATTTATTCCCAAACTATCATGAGTATGTTCAACGGTATTGCAATGC ACACTATGGGTTTTTTGGATACGACGTGTCGGGCGCTTCCAATCTTCAAG AGCTCAACGTCCTATTGAGGGGTAGCATCCTCATTAGACGGAAAAAGGAA GATGTACTAACGCAATTACCCGACAAGCAAAGGCAAGTAATCTGGGTGCA GACGAAATCCAAAATTATGAAGGACGTTTCATCTGTTACCGACAAACTTT CCGCAGCAAGACAGGCTTTGAATTCAGCTGCTAATGAAACGCAAGCGATG TCGTTACAAATGGCGGTAAGGTCTGCGCAGAACGAGCTGTACTCGCTAAC TGGTCAGGCAAAGTTGGATTCCGTCCTTGAATTTTGTCGTGATACCTCCG AGTCTGGATGCAAGTTTATAGTTTTTGCGCATCATGCACTGGTCATGGAC CCTGTTCACGATTATGTCACGAAGAAGCTCAAACTTGATGCAATTCGTAT CGACGGAAATACAAAACAGGAAAGTCGACAGTCTCTTTGTTCGAGGTTTC AGAACGACCCAAAGTGCAAAGTCGCGGTGCTCTCAATAACCGCAGCTGGG GTGGGTATCACGTTAACCGAAGCCAAAGTAGTGCTTTTCGCAGAACTGTA TTGGAACCCAGGGAGCCTTCTTCAGGCTGAGGATCGAGCCCATAGAATTG GTCAAAGAGATTGTGTCCTGGTGCAATACTTGCTAGCAAAGAACACTATT GATGTGTCCATGTGGGGAACCGTTCGGAAGAAACTGCACGTCGTTGGTCA CTCTTTGACAGGGACCGCCGGTCGCATGGAGGTCGGCAAGGAACAGAATG ACAAGGGGAATGGAGACACGAGAGACTTAGAATCTTATTTTAAGAAGATG CCAAAAGACAAGCGTAGAAGGGAAGTGGAGGACACAGAAGATGACATTGA GGACGACGTAGGTGCAATTCTTACTGAAGATATCGGAAGCCCTCCCTCAG CAACACAAACACCTACACAAAATCGAAAACCCAGCGCCCGTAGCGACGCC TATGGATCCTCGTCGATATTTTTCCCCACGCGAATGGATGAGCTCGAACC AAACCCATGCGAAGACATTAATGGTTGGCATGCCAGAGGCGATAAAACTG GAGCTGTGCAAAGACGAATAGACGCTGATCGTGCACTGGCCGAAAAGCTG CAAGCGGAGTTCAACAAGGAGCCCCTGTGA back to top
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