Gvermi12158.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12158.t1
Unique NameGvermi12158.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3624934..3625784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709398.1
PFAMsGot1
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016192,GO:0051179,GO:0051234
Evalue1.02e-28
EggNOG OGsCOG5102@1|root,KOG2887@2759|Eukaryota
Descriptionvesicle-mediated transport
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12158Gvermi12158Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3624934..3625784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12158.t1Gvermi12158.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3624934..3625784 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12158.t1.stop1Gvermi12158.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3624934..3624936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12158.t1.CDS1Gvermi12158.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3624934..3625022 -
Gvermi12158.t1.CDS2Gvermi12158.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3625130..3625784 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12158.t1.exon1Gvermi12158.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3624934..3625022 -
Gvermi12158.t1.exon2Gvermi12158.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3625130..3625784 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12158.t1.intron1Gvermi12158.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3625023..3625129 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12158.t1.start1Gvermi12158.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3625782..3625784 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12158.t1 ID=Gvermi12158.t1|Name=Gvermi12158.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=248bp
MLKLRPNRSTSQMGLLEGLNSLQGAPLPAPATSGAASASGDALASLSASA
KSLFGDLSGSLGPSLESLNDKAKQSVGSVRRLMGDEAAGDEEAPAQMTLS
DEINTMLNLSMVQRIGLFGMIFGTGVLLICMSFTFLPLIVVVPHKFAASF
TLGNVLAITSTWVLVGPRAQIRNMFNPVRAVASAVYLASLVFTLLAAFFG
GQLRYLLVMVALVAELASLIWYALSYIPYGRQMICRVVGVMGISFGS*
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spliced messenger RNA

>Gvermi12158.t1 ID=Gvermi12158.t1|Name=Gvermi12158.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:3624934..3625784- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGCTGCGGCCAAACCGGTCCACGTCGCAAATGGGGCTGCTGGA
GGGGCTCAACTCGCTGCAAGGCGCGCCGCTGCCGGCGCCGGCCACGTCGG
GCGCGGCCAGCGCGAGCGGCGACGCGCTGGCGTCGCTGTCGGCGTCGGCG
AAGAGCCTGTTCGGCGACCTGTCCGGCTCGCTGGGGCCGTCGCTGGAGTC
GCTCAACGACAAGGCCAAGCAGTCGGTGGGCTCGGTGCGGCGGCTGATGG
GCGACGAGGCGGCAGGAGACGAGGAGGCGCCGGCGCAAATGACGCTCTCG
GACGAGATTAACACGATGTTGAACCTGAGCATGGTGCAGAGGATTGGGCT
GTTCGGCATGATATTTGGCACGGGCGTGTTGCTGATCTGCATGTCGTTCA
CGTTCCTGCCGCTCATCGTGGTGGTGCCGCACAAGTTTGCGGCCAGTTTC
ACGCTGGGAAACGTGCTGGCCATCACGAGCACGTGGGTGCTGGTGGGGCC
GCGCGCGCAGATACGCAACATGTTCAACCCGGTGCGGGCGGTGGCGTCGG
CGGTATACCTGGCCTCGCTGGTGTTTACGCTGCTGGCGGCGTTCTTCGGC
GGCCAGCTGCGCTATTTGTTGGTGATGGTGGCTCTTGTTGCGGAGCTTGC
ATCTCTGATTTGGTACGCACTGAGTTACATCCCGTACGGGAGGCAAATGA
TATGCAGAGTGGTTGGCGTGATGGGCATCTCGTTCGGATCGTGA
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protein sequence of Gvermi12158.t1

>Gvermi12158.t1 ID=Gvermi12158.t1|Name=Gvermi12158.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MLKLRPNRSTSQMGLLEGLNSLQGAPLPAPATSGAASASGDALASLSASA
KSLFGDLSGSLGPSLESLNDKAKQSVGSVRRLMGDEAAGDEEAPAQMTLS
DEINTMLNLSMVQRIGLFGMIFGTGVLLICMSFTFLPLIVVVPHKFAASF
TLGNVLAITSTWVLVGPRAQIRNMFNPVRAVASAVYLASLVFTLLAAFFG
GQLRYLLVMVALVAELASLIWYALSYIPYGRQMICRVVGVMGISFGS*
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mRNA from alignment at ScGOVlb_3404:3624934..3625784-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12158.t1 ID=Gvermi12158.t1|Name=Gvermi12158.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=851bp|location=Sequence derived from alignment at ScGOVlb_3404:3624934..3625784- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAAGCTGCGGCCAAACCGGTCCACGTCGCAAATGGGGCTGCTGGA
GGGGCTCAACTCGCTGCAAGGCGCGCCGCTGCCGGCGCCGGCCACGTCGG
GCGCGGCCAGCGCGAGCGGCGACGCGCTGGCGTCGCTGTCGGCGTCGGCG
AAGAGCCTGTTCGGCGACCTGTCCGGCTCGCTGGGGCCGTCGCTGGAGTC
GCTCAACGACAAGGCCAAGCAGTCGGTGGGCTCGGTGCGGCGGCTGATGG
GCGACGAGGCGGCAGGAGACGAGGAGGCGCCGGCGCAAATGACGCTCTCG
GACGAGATTAACACGATGTTGAACCTGAGCATGGTGCAGAGGATTGGGCT
GTTCGGCATGATATTTGGCACGGGCGTGTTGCTGATCTGCATGTCGTTCA
CGTTCCTGCCGCTCATCGTGGTGGTGCCGCACAAGTTTGCGGCCAGTTTC
ACGCTGGGAAACGTGCTGGCCATCACGAGCACGTGGGTGCTGGTGGGGCC
GCGCGCGCAGATACGCAACATGTTCAACCCGGTGCGGGCGGTGGCGTCGG
CGGTATACCTGGCCTCGCTGGTGTTTACGCTGCTGGCGGCGTTCTTCGGC
GGCCAGCTGCGCTATTTGTTGGTGATGGTGGCTCTTGTTGCGGAGCTTGC
ATCTCGTAAGTTTGCACGCGCTCGCGGACGGGCGACGCGAAACGGGTTTA
TTGTGAACGCGGAGACTGACGTGATGCGGTTTTGTGTGTGTGTGTGTGTG
TTGCAACGGCAGTGATTTGGTACGCACTGAGTTACATCCCGTACGGGAGG
CAAATGATATGCAGAGTGGTTGGCGTGATGGGCATCTCGTTCGGATCGTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3624934..3625784-

>Gvermi12158.t1 ID=Gvermi12158.t1|Name=Gvermi12158.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=744bp|location=Sequence derived from alignment at ScGOVlb_3404:3624934..3625784- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAAGCTGCGGCCAAACCGGTCCACGTCGCAAATGGGGCTGCTGGA
GGGGCTCAACTCGCTGCAAGGCGCGCCGCTGCCGGCGCCGGCCACGTCGG
GCGCGGCCAGCGCGAGCGGCGACGCGCTGGCGTCGCTGTCGGCGTCGGCG
AAGAGCCTGTTCGGCGACCTGTCCGGCTCGCTGGGGCCGTCGCTGGAGTC
GCTCAACGACAAGGCCAAGCAGTCGGTGGGCTCGGTGCGGCGGCTGATGG
GCGACGAGGCGGCAGGAGACGAGGAGGCGCCGGCGCAAATGACGCTCTCG
GACGAGATTAACACGATGTTGAACCTGAGCATGGTGCAGAGGATTGGGCT
GTTCGGCATGATATTTGGCACGGGCGTGTTGCTGATCTGCATGTCGTTCA
CGTTCCTGCCGCTCATCGTGGTGGTGCCGCACAAGTTTGCGGCCAGTTTC
ACGCTGGGAAACGTGCTGGCCATCACGAGCACGTGGGTGCTGGTGGGGCC
GCGCGCGCAGATACGCAACATGTTCAACCCGGTGCGGGCGGTGGCGTCGG
CGGTATACCTGGCCTCGCTGGTGTTTACGCTGCTGGCGGCGTTCTTCGGC
GGCCAGCTGCGCTATTTGTTGGTGATGGTGGCTCTTGTTGCGGAGCTTGC
ATCTCTGATTTGGTACGCACTGAGTTACATCCCGTACGGGAGGCAAATGA
TATGCAGAGTGGTTGGCGTGATGGGCATCTCGTTCGGATCGTGA
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