Gvermi12156.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12156.t1
Unique NameGvermi12156.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3620993..3621862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1313294.BPA_0077800
Preferred namepcs
PFAMsCDP-OH_P_transf
Max annot lvl2|Bacteria
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K01004,ko:K17103
KEGG ReactionR01800,R05794
KEGG Pathwayko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110
KEGG ModuleM00093
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0050520,GO:0071704,GO:0090407,GO:1901576
Evalue8.99e-39
EggNOG OGsCOG1183@1|root,COG1183@2|Bacteria
EC2.7.8.24,2.7.8.8
Descriptionphosphatidylcholine synthase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12156Gvermi12156Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3620993..3621862 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12156.t1.stop1Gvermi12156.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3620993..3620995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12156.t1.CDS1Gvermi12156.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3620993..3621862 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12156.t1.exon1Gvermi12156.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3620993..3621862 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12156.t1.start1Gvermi12156.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3621860..3621862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12156.t1Gvermi12156.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3620993..3621862 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12156.t1 ID=Gvermi12156.t1|Name=Gvermi12156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=290bp
MELRSRTIGKSDASSTATSEKTGASAAEMSAQQSAELSAEPGATPRRRPA
RAFPWYQVVAAWMVHLLTASGLLVNMFSLLHAIFGRADFNLFAKLNWLAI
FIDAVDGTFARAVDIKNVVPTYDGAMLDNIIDFQTFSVLPALAIVVFEMV
HGVAAQYAAAVAILLASAYQFCQTVAKTADAFVGFPSYWNIVVFYLYYLQ
PPSAVSLLLIFSCAVLSFVPLHFIYPTRTKQLHYVNHAGAYVWAALMMVP
TMAPDSRYVRPALYVSFVYVVYYFALSIVLDARRRKARA*
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spliced messenger RNA

>Gvermi12156.t1 ID=Gvermi12156.t1|Name=Gvermi12156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:3620993..3621862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGCGCAGCCGCACGATCGGCAAGTCGGACGCCTCCTCCACGGC
CACGTCGGAGAAGACGGGCGCGTCCGCCGCCGAGATGAGCGCGCAGCAGA
GCGCCGAGCTGAGCGCCGAGCCGGGCGCCACGCCGCGCCGCCGCCCCGCG
CGCGCGTTCCCGTGGTACCAGGTGGTGGCCGCGTGGATGGTGCACCTGCT
CACGGCGTCGGGGCTGCTGGTCAACATGTTCTCGCTGCTGCACGCCATTT
TCGGCCGCGCCGACTTCAACCTGTTCGCCAAGCTCAACTGGCTGGCCATT
TTCATCGACGCCGTGGACGGCACCTTTGCGAGGGCCGTCGACATCAAGAA
CGTGGTGCCCACGTACGACGGCGCCATGCTGGACAACATCATCGACTTCC
AGACGTTCTCCGTGCTGCCCGCGCTGGCCATCGTCGTGTTCGAGATGGTG
CACGGCGTGGCGGCGCAGTACGCCGCCGCCGTGGCCATCCTGCTGGCGTC
GGCGTACCAGTTTTGCCAGACGGTGGCCAAGACGGCCGACGCCTTTGTGG
GCTTTCCGAGCTACTGGAACATTGTCGTGTTCTACCTGTACTACCTGCAG
CCGCCCAGCGCCGTGTCGCTGCTGCTCATCTTCAGCTGCGCCGTGCTGTC
GTTTGTGCCGCTGCACTTTATCTACCCGACGCGCACCAAGCAGCTGCACT
ACGTCAACCACGCGGGCGCGTACGTGTGGGCGGCGCTCATGATGGTGCCG
ACCATGGCGCCCGACTCGCGCTACGTCAGGCCGGCGCTGTACGTGTCGTT
TGTGTACGTGGTGTACTACTTTGCGCTCTCCATCGTGCTGGACGCGCGCC
GACGGAAAGCGCGCGCGTGA
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protein sequence of Gvermi12156.t1

>Gvermi12156.t1 ID=Gvermi12156.t1|Name=Gvermi12156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=290bp
MELRSRTIGKSDASSTATSEKTGASAAEMSAQQSAELSAEPGATPRRRPA
RAFPWYQVVAAWMVHLLTASGLLVNMFSLLHAIFGRADFNLFAKLNWLAI
FIDAVDGTFARAVDIKNVVPTYDGAMLDNIIDFQTFSVLPALAIVVFEMV
HGVAAQYAAAVAILLASAYQFCQTVAKTADAFVGFPSYWNIVVFYLYYLQ
PPSAVSLLLIFSCAVLSFVPLHFIYPTRTKQLHYVNHAGAYVWAALMMVP
TMAPDSRYVRPALYVSFVYVVYYFALSIVLDARRRKARA*
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mRNA from alignment at ScGOVlb_3404:3620993..3621862-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12156.t1 ID=Gvermi12156.t1|Name=Gvermi12156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:3620993..3621862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCTGCGCAGCCGCACGATCGGCAAGTCGGACGCCTCCTCCACGGC
CACGTCGGAGAAGACGGGCGCGTCCGCCGCCGAGATGAGCGCGCAGCAGA
GCGCCGAGCTGAGCGCCGAGCCGGGCGCCACGCCGCGCCGCCGCCCCGCG
CGCGCGTTCCCGTGGTACCAGGTGGTGGCCGCGTGGATGGTGCACCTGCT
CACGGCGTCGGGGCTGCTGGTCAACATGTTCTCGCTGCTGCACGCCATTT
TCGGCCGCGCCGACTTCAACCTGTTCGCCAAGCTCAACTGGCTGGCCATT
TTCATCGACGCCGTGGACGGCACCTTTGCGAGGGCCGTCGACATCAAGAA
CGTGGTGCCCACGTACGACGGCGCCATGCTGGACAACATCATCGACTTCC
AGACGTTCTCCGTGCTGCCCGCGCTGGCCATCGTCGTGTTCGAGATGGTG
CACGGCGTGGCGGCGCAGTACGCCGCCGCCGTGGCCATCCTGCTGGCGTC
GGCGTACCAGTTTTGCCAGACGGTGGCCAAGACGGCCGACGCCTTTGTGG
GCTTTCCGAGCTACTGGAACATTGTCGTGTTCTACCTGTACTACCTGCAG
CCGCCCAGCGCCGTGTCGCTGCTGCTCATCTTCAGCTGCGCCGTGCTGTC
GTTTGTGCCGCTGCACTTTATCTACCCGACGCGCACCAAGCAGCTGCACT
ACGTCAACCACGCGGGCGCGTACGTGTGGGCGGCGCTCATGATGGTGCCG
ACCATGGCGCCCGACTCGCGCTACGTCAGGCCGGCGCTGTACGTGTCGTT
TGTGTACGTGGTGTACTACTTTGCGCTCTCCATCGTGCTGGACGCGCGCC
GACGGAAAGCGCGCGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3620993..3621862-

>Gvermi12156.t1 ID=Gvermi12156.t1|Name=Gvermi12156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:3620993..3621862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCTGCGCAGCCGCACGATCGGCAAGTCGGACGCCTCCTCCACGGC
CACGTCGGAGAAGACGGGCGCGTCCGCCGCCGAGATGAGCGCGCAGCAGA
GCGCCGAGCTGAGCGCCGAGCCGGGCGCCACGCCGCGCCGCCGCCCCGCG
CGCGCGTTCCCGTGGTACCAGGTGGTGGCCGCGTGGATGGTGCACCTGCT
CACGGCGTCGGGGCTGCTGGTCAACATGTTCTCGCTGCTGCACGCCATTT
TCGGCCGCGCCGACTTCAACCTGTTCGCCAAGCTCAACTGGCTGGCCATT
TTCATCGACGCCGTGGACGGCACCTTTGCGAGGGCCGTCGACATCAAGAA
CGTGGTGCCCACGTACGACGGCGCCATGCTGGACAACATCATCGACTTCC
AGACGTTCTCCGTGCTGCCCGCGCTGGCCATCGTCGTGTTCGAGATGGTG
CACGGCGTGGCGGCGCAGTACGCCGCCGCCGTGGCCATCCTGCTGGCGTC
GGCGTACCAGTTTTGCCAGACGGTGGCCAAGACGGCCGACGCCTTTGTGG
GCTTTCCGAGCTACTGGAACATTGTCGTGTTCTACCTGTACTACCTGCAG
CCGCCCAGCGCCGTGTCGCTGCTGCTCATCTTCAGCTGCGCCGTGCTGTC
GTTTGTGCCGCTGCACTTTATCTACCCGACGCGCACCAAGCAGCTGCACT
ACGTCAACCACGCGGGCGCGTACGTGTGGGCGGCGCTCATGATGGTGCCG
ACCATGGCGCCCGACTCGCGCTACGTCAGGCCGGCGCTGTACGTGTCGTT
TGTGTACGTGGTGTACTACTTTGCGCTCTCCATCGTGCTGGACGCGCGCC
GACGGAAAGCGCGCGCGTGA
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