Gvermi12154.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12154.t1
Unique NameGvermi12154.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3616868..3617980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.2673
PFAMsUAA
Max annot lvl4776|Peronosporales
KEGG koko:K15275
KEGG TC2.A.7.11.1,2.A.7.11.4
Evalue2.54e-68
EggNOG OGsCOG0697@1|root,KOG1580@2759|Eukaryota,3QC0Z@4776|Peronosporales
DescriptionUAA transporter family
COG categoryG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12154Gvermi12154Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3616868..3617980 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12154.t1.stop1Gvermi12154.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3616868..3616870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12154.t1.CDS1Gvermi12154.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3616868..3617980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12154.t1.exon1Gvermi12154.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3616868..3617980 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12154.t1.start1Gvermi12154.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3617978..3617980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12154.t1Gvermi12154.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3616868..3617980 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12154.t1 ID=Gvermi12154.t1|Name=Gvermi12154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=371bp
MTVASLPPLPPRAQPRARAAPKPLRREWQLLICALGIYVCYLRYGLLQER
IYSTAYGAERFTHSSFLVAVQTLTNAAVALLVLALRRVAAPRPAAPQREP
ADKPPPRTARHRHRHRRAFAAAAAAAAAAAPLADYALVALSYLSAMLFSF
TALNHMSYPMQALGKSCKMIPVMLMGVLIRRHRYAPREYACVALISLGVA
LFSWNSRRAAAAPPASPLGLALLLASLLMDGATGALQERLVARHRPGTHQ
LMLWQNVCAAAWLAAALAATGDGARAAAFVLRHPHVMVDVMQFSLVSALG
QNFIFYTVRNFSALVVTTITTTRKMFTVLLSIFLYSHHMGARRWLGLALV
FAAISWEAAAKQRAHRPKAH*
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spliced messenger RNA

>Gvermi12154.t1 ID=Gvermi12154.t1|Name=Gvermi12154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:3616868..3617980- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTCGCCTCGCTGCCGCCGCTGCCGCCGCGCGCGCAGCCGCGCGC
GCGCGCCGCGCCCAAGCCGCTGCGCCGCGAGTGGCAGCTGCTCATATGCG
CGCTCGGAATCTACGTGTGCTACCTGCGCTACGGCCTGCTGCAGGAGCGC
ATCTACTCCACCGCGTACGGCGCGGAGCGCTTCACGCACTCCTCCTTCCT
GGTCGCCGTGCAGACGCTCACCAACGCCGCCGTCGCGCTGCTGGTGCTGG
CGCTGCGCCGCGTCGCCGCCCCGCGCCCCGCCGCGCCGCAGCGCGAGCCG
GCCGACAAGCCGCCGCCGCGCACCGCCCGCCACCGCCACCGCCACCGCCG
CGCCTTTGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGCTGGCCG
ACTACGCGCTCGTGGCGCTGTCGTACCTGTCCGCCATGCTCTTCTCGTTC
ACGGCGCTCAACCACATGTCGTACCCGATGCAGGCGCTGGGCAAGTCGTG
CAAGATGATCCCGGTCATGCTCATGGGCGTCCTCATCCGCCGCCACCGCT
ACGCGCCGCGCGAGTACGCGTGCGTGGCGCTCATCTCGCTGGGCGTGGCG
CTCTTCTCGTGGAACTCGCGCCGCGCCGCCGCCGCGCCGCCCGCGTCGCC
GCTGGGGCTGGCGCTGCTGCTGGCGTCGCTGCTCATGGACGGCGCCACCG
GCGCGCTGCAGGAGCGGCTCGTGGCGCGCCACCGCCCGGGCACGCACCAG
CTCATGCTGTGGCAGAACGTGTGCGCCGCCGCGTGGCTGGCCGCCGCGCT
GGCCGCCACGGGCGACGGCGCGCGCGCCGCCGCCTTTGTGCTGCGCCACC
CGCACGTCATGGTGGACGTGATGCAGTTCTCGCTCGTGTCCGCGCTGGGG
CAGAACTTCATCTTCTACACCGTGCGCAACTTCAGCGCCCTCGTCGTCAC
CACCATCACCACCACGCGCAAGATGTTCACCGTGCTGCTGTCCATCTTCC
TGTACAGCCACCACATGGGCGCCCGCAGGTGGCTCGGGCTCGCCCTCGTC
TTCGCCGCCATCTCGTGGGAGGCCGCCGCCAAGCAGCGCGCGCACCGCCC
CAAGGCGCACTGA
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protein sequence of Gvermi12154.t1

>Gvermi12154.t1 ID=Gvermi12154.t1|Name=Gvermi12154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=371bp
MTVASLPPLPPRAQPRARAAPKPLRREWQLLICALGIYVCYLRYGLLQER
IYSTAYGAERFTHSSFLVAVQTLTNAAVALLVLALRRVAAPRPAAPQREP
ADKPPPRTARHRHRHRRAFAAAAAAAAAAAPLADYALVALSYLSAMLFSF
TALNHMSYPMQALGKSCKMIPVMLMGVLIRRHRYAPREYACVALISLGVA
LFSWNSRRAAAAPPASPLGLALLLASLLMDGATGALQERLVARHRPGTHQ
LMLWQNVCAAAWLAAALAATGDGARAAAFVLRHPHVMVDVMQFSLVSALG
QNFIFYTVRNFSALVVTTITTTRKMFTVLLSIFLYSHHMGARRWLGLALV
FAAISWEAAAKQRAHRPKAH*
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mRNA from alignment at ScGOVlb_3404:3616868..3617980-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12154.t1 ID=Gvermi12154.t1|Name=Gvermi12154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:3616868..3617980- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGTCGCCTCGCTGCCGCCGCTGCCGCCGCGCGCGCAGCCGCGCGC
GCGCGCCGCGCCCAAGCCGCTGCGCCGCGAGTGGCAGCTGCTCATATGCG
CGCTCGGAATCTACGTGTGCTACCTGCGCTACGGCCTGCTGCAGGAGCGC
ATCTACTCCACCGCGTACGGCGCGGAGCGCTTCACGCACTCCTCCTTCCT
GGTCGCCGTGCAGACGCTCACCAACGCCGCCGTCGCGCTGCTGGTGCTGG
CGCTGCGCCGCGTCGCCGCCCCGCGCCCCGCCGCGCCGCAGCGCGAGCCG
GCCGACAAGCCGCCGCCGCGCACCGCCCGCCACCGCCACCGCCACCGCCG
CGCCTTTGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGCTGGCCG
ACTACGCGCTCGTGGCGCTGTCGTACCTGTCCGCCATGCTCTTCTCGTTC
ACGGCGCTCAACCACATGTCGTACCCGATGCAGGCGCTGGGCAAGTCGTG
CAAGATGATCCCGGTCATGCTCATGGGCGTCCTCATCCGCCGCCACCGCT
ACGCGCCGCGCGAGTACGCGTGCGTGGCGCTCATCTCGCTGGGCGTGGCG
CTCTTCTCGTGGAACTCGCGCCGCGCCGCCGCCGCGCCGCCCGCGTCGCC
GCTGGGGCTGGCGCTGCTGCTGGCGTCGCTGCTCATGGACGGCGCCACCG
GCGCGCTGCAGGAGCGGCTCGTGGCGCGCCACCGCCCGGGCACGCACCAG
CTCATGCTGTGGCAGAACGTGTGCGCCGCCGCGTGGCTGGCCGCCGCGCT
GGCCGCCACGGGCGACGGCGCGCGCGCCGCCGCCTTTGTGCTGCGCCACC
CGCACGTCATGGTGGACGTGATGCAGTTCTCGCTCGTGTCCGCGCTGGGG
CAGAACTTCATCTTCTACACCGTGCGCAACTTCAGCGCCCTCGTCGTCAC
CACCATCACCACCACGCGCAAGATGTTCACCGTGCTGCTGTCCATCTTCC
TGTACAGCCACCACATGGGCGCCCGCAGGTGGCTCGGGCTCGCCCTCGTC
TTCGCCGCCATCTCGTGGGAGGCCGCCGCCAAGCAGCGCGCGCACCGCCC
CAAGGCGCACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3616868..3617980-

>Gvermi12154.t1 ID=Gvermi12154.t1|Name=Gvermi12154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:3616868..3617980- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGTCGCCTCGCTGCCGCCGCTGCCGCCGCGCGCGCAGCCGCGCGC
GCGCGCCGCGCCCAAGCCGCTGCGCCGCGAGTGGCAGCTGCTCATATGCG
CGCTCGGAATCTACGTGTGCTACCTGCGCTACGGCCTGCTGCAGGAGCGC
ATCTACTCCACCGCGTACGGCGCGGAGCGCTTCACGCACTCCTCCTTCCT
GGTCGCCGTGCAGACGCTCACCAACGCCGCCGTCGCGCTGCTGGTGCTGG
CGCTGCGCCGCGTCGCCGCCCCGCGCCCCGCCGCGCCGCAGCGCGAGCCG
GCCGACAAGCCGCCGCCGCGCACCGCCCGCCACCGCCACCGCCACCGCCG
CGCCTTTGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGCTGGCCG
ACTACGCGCTCGTGGCGCTGTCGTACCTGTCCGCCATGCTCTTCTCGTTC
ACGGCGCTCAACCACATGTCGTACCCGATGCAGGCGCTGGGCAAGTCGTG
CAAGATGATCCCGGTCATGCTCATGGGCGTCCTCATCCGCCGCCACCGCT
ACGCGCCGCGCGAGTACGCGTGCGTGGCGCTCATCTCGCTGGGCGTGGCG
CTCTTCTCGTGGAACTCGCGCCGCGCCGCCGCCGCGCCGCCCGCGTCGCC
GCTGGGGCTGGCGCTGCTGCTGGCGTCGCTGCTCATGGACGGCGCCACCG
GCGCGCTGCAGGAGCGGCTCGTGGCGCGCCACCGCCCGGGCACGCACCAG
CTCATGCTGTGGCAGAACGTGTGCGCCGCCGCGTGGCTGGCCGCCGCGCT
GGCCGCCACGGGCGACGGCGCGCGCGCCGCCGCCTTTGTGCTGCGCCACC
CGCACGTCATGGTGGACGTGATGCAGTTCTCGCTCGTGTCCGCGCTGGGG
CAGAACTTCATCTTCTACACCGTGCGCAACTTCAGCGCCCTCGTCGTCAC
CACCATCACCACCACGCGCAAGATGTTCACCGTGCTGCTGTCCATCTTCC
TGTACAGCCACCACATGGGCGCCCGCAGGTGGCTCGGGCTCGCCCTCGTC
TTCGCCGCCATCTCGTGGGAGGCCGCCGCCAAGCAGCGCGCGCACCGCCC
CAAGGCGCACTGA
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