Gvermi12150.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12150.t1
Unique Name	Gvermi12150.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3581452..3582903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS076CT
Max annot lvl	2759\|Eukaryota
Evalue	2.44e-07
EggNOG OGs	28PFB@1\|root,2QW3A@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12150	Gvermi12150	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3581452..3582903 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12150.t1.start1	Gvermi12150.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3581452..3581454 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12150.t1.CDS1	Gvermi12150.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3581452..3582903 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12150.t1.exon1	Gvermi12150.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3581452..3582903 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12150.t1.stop1	Gvermi12150.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3582901..3582903 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12150.t1	Gvermi12150.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3581452..3582903 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3581452..3582903+
coding sequence from alignment at ScGOVlb_3404:3581452..3582903+

mRNA sequence

>Gvermi12150.t1 ID=Gvermi12150.t1|Name=Gvermi12150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=484bp
MASSDAPIVDVSAKNEQLSKKASSSSGDEAALVIKNPTDGPGTLPFSLSL
PTGTTVGELKQELNANYPGSPPIQAQRLIYAGKLLRDGQKLREFLSPHQQ
AGTPHTIHLVVSYPQQTRPSSQNAATANQPSTHTGAAGGASGTQLPQLPQ
FAYNGQFLGGQVPIPLQEAMYAHHLQVFENVVARTLQNGNGAQLDPRTLA
QMHAADVAAAAAAANAMDGRTPTHGVPPPLAHVNGVFPGMMPMHPDVRFY
NLPHMNMAAAQHAQHAHHAHTHQQPPLQRFHQNGQPQPHPAQQQRGFNGF
HLDVQIGRHGLPNGMRNALNAQNQPHVRQFVFQIEINWALIAKLLFIVYL
LGHEGNSSRVYSLIIAALGIYLWQTGHLEWFRRLISIALPSPGRLIENLF
PQQTQQHDAQQEDDSRESPPARQNPYGYPALIFFFVYSFVYGIVCSLLPA
WNPQPLPRIDQIVQNPDRPQEEPDVGANHEHVD*

spliced messenger RNA

>Gvermi12150.t1 ID=Gvermi12150.t1|Name=Gvermi12150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:3581452..3582903+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTTCGGATGCCCCCATCGTTGACGTTTCGGCGAAGAACGAGCA
ACTTTCTAAAAAGGCATCATCATCATCTGGTGATGAAGCCGCCCTCGTTA
TCAAGAACCCAACCGACGGACCCGGAACACTGCCTTTTTCCCTCAGCTTG
CCGACGGGTACCACTGTCGGCGAACTCAAGCAGGAGCTGAATGCAAATTA
TCCTGGTTCGCCCCCTATTCAAGCTCAGCGCCTGATATACGCTGGAAAGC
TACTTCGAGATGGGCAGAAGCTCCGTGAATTTCTTTCACCTCATCAGCAA
GCAGGAACTCCCCACACGATTCATCTTGTCGTATCGTATCCGCAACAAAC
TCGACCGTCATCTCAGAATGCAGCGACGGCAAACCAGCCGTCCACACATA
CGGGAGCTGCTGGCGGAGCTTCCGGTACACAGCTACCTCAGCTTCCGCAG
TTCGCCTACAACGGTCAATTTCTTGGAGGCCAGGTGCCGATACCTCTTCA
AGAAGCTATGTATGCCCATCATTTGCAAGTTTTTGAAAATGTAGTTGCCC
GAACATTGCAGAACGGCAACGGCGCGCAACTGGACCCTCGCACGTTGGCT
CAAATGCATgccgcggatgttgctgcggctgcggctgccgctAACGCAAT
GGATGGCCGAACGCCGACCCACGGTGTTCCACCGCCACTCGCGCATGTGA
ATGGCGTATTTCCAGGCATGATGCCCATGCACCCTGATGTCCGTTTTTAC
AACCTCCCTCACATGAACATGGCTGCTGCCCAGCATGCTCAGCATGCCCA
CCATGCCCATACGCACCAACAACCTCCACTACAGCGCTTCCACCAAAACG
GGCAGCCTCAACCTCATCCAGCGCAACAGCAAAGGGGATTCAATGGCTTT
CATCTGGACGTGCAGATTGGTAGGCATGGGTTGCCAAACGGAATGCGTAA
CGCACTTAACGCTCAGAATCAGCCACACGTCAGGCAGTTTGTGTTTCAGA
TTGAGATTAACTGGGCTCTTATCGCAAAACTGCTTTTCATTGTTTACTTA
CTTGGCCATGAAGGAAACTCCAGTCGTGTATACTCTCTTATCATTGCGGC
ATTGGGTATCTATCTGTGGCAGACGGGCCATCTGGAATGGTTCCGTCGTC
TAATTAGCATTGCTCTTCCAAGTCCAGGACGATTGATCGAAAACTTATTT
CCTCAACAAACCCAACAACATGACGCACAGCAAGAAGATGATTCTAGAGA
ATCTCCACCAGCACGACAGAATCCCTACGGTTATCCAGCTCTAATCTTCT
TTTTCGTTTACTCCTTTGTGTACGGGATTGTTTGCTCATTGTTGCCAGCT
TGGAATCCGCAGCCGCTTCCGCGCATTGATCAGATAGTTCAGAATCCAGA
CAGGCCGCAAGAAGAGCCGGATGTTGGGGCAAACCATGAGCATGTGGATT
AG

protein sequence of Gvermi12150.t1

>Gvermi12150.t1 ID=Gvermi12150.t1|Name=Gvermi12150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=484bp
MASSDAPIVDVSAKNEQLSKKASSSSGDEAALVIKNPTDGPGTLPFSLSL
PTGTTVGELKQELNANYPGSPPIQAQRLIYAGKLLRDGQKLREFLSPHQQ
AGTPHTIHLVVSYPQQTRPSSQNAATANQPSTHTGAAGGASGTQLPQLPQ
FAYNGQFLGGQVPIPLQEAMYAHHLQVFENVVARTLQNGNGAQLDPRTLA
QMHAADVAAAAAAANAMDGRTPTHGVPPPLAHVNGVFPGMMPMHPDVRFY
NLPHMNMAAAQHAQHAHHAHTHQQPPLQRFHQNGQPQPHPAQQQRGFNGF
HLDVQIGRHGLPNGMRNALNAQNQPHVRQFVFQIEINWALIAKLLFIVYL
LGHEGNSSRVYSLIIAALGIYLWQTGHLEWFRRLISIALPSPGRLIENLF
PQQTQQHDAQQEDDSRESPPARQNPYGYPALIFFFVYSFVYGIVCSLLPA
WNPQPLPRIDQIVQNPDRPQEEPDVGANHEHVD*

mRNA from alignment at ScGOVlb_3404:3581452..3582903+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12150.t1 ID=Gvermi12150.t1|Name=Gvermi12150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:3581452..3582903+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCTTCGGATGCCCCCATCGTTGACGTTTCGGCGAAGAACGAGCA
ACTTTCTAAAAAGGCATCATCATCATCTGGTGATGAAGCCGCCCTCGTTA
TCAAGAACCCAACCGACGGACCCGGAACACTGCCTTTTTCCCTCAGCTTG
CCGACGGGTACCACTGTCGGCGAACTCAAGCAGGAGCTGAATGCAAATTA
TCCTGGTTCGCCCCCTATTCAAGCTCAGCGCCTGATATACGCTGGAAAGC
TACTTCGAGATGGGCAGAAGCTCCGTGAATTTCTTTCACCTCATCAGCAA
GCAGGAACTCCCCACACGATTCATCTTGTCGTATCGTATCCGCAACAAAC
TCGACCGTCATCTCAGAATGCAGCGACGGCAAACCAGCCGTCCACACATA
CGGGAGCTGCTGGCGGAGCTTCCGGTACACAGCTACCTCAGCTTCCGCAG
TTCGCCTACAACGGTCAATTTCTTGGAGGCCAGGTGCCGATACCTCTTCA
AGAAGCTATGTATGCCCATCATTTGCAAGTTTTTGAAAATGTAGTTGCCC
GAACATTGCAGAACGGCAACGGCGCGCAACTGGACCCTCGCACGTTGGCT
CAAATGCATgccgcggatgttgctgcggctgcggctgccgctAACGCAAT
GGATGGCCGAACGCCGACCCACGGTGTTCCACCGCCACTCGCGCATGTGA
ATGGCGTATTTCCAGGCATGATGCCCATGCACCCTGATGTCCGTTTTTAC
AACCTCCCTCACATGAACATGGCTGCTGCCCAGCATGCTCAGCATGCCCA
CCATGCCCATACGCACCAACAACCTCCACTACAGCGCTTCCACCAAAACG
GGCAGCCTCAACCTCATCCAGCGCAACAGCAAAGGGGATTCAATGGCTTT
CATCTGGACGTGCAGATTGGTAGGCATGGGTTGCCAAACGGAATGCGTAA
CGCACTTAACGCTCAGAATCAGCCACACGTCAGGCAGTTTGTGTTTCAGA
TTGAGATTAACTGGGCTCTTATCGCAAAACTGCTTTTCATTGTTTACTTA
CTTGGCCATGAAGGAAACTCCAGTCGTGTATACTCTCTTATCATTGCGGC
ATTGGGTATCTATCTGTGGCAGACGGGCCATCTGGAATGGTTCCGTCGTC
TAATTAGCATTGCTCTTCCAAGTCCAGGACGATTGATCGAAAACTTATTT
CCTCAACAAACCCAACAACATGACGCACAGCAAGAAGATGATTCTAGAGA
ATCTCCACCAGCACGACAGAATCCCTACGGTTATCCAGCTCTAATCTTCT
TTTTCGTTTACTCCTTTGTGTACGGGATTGTTTGCTCATTGTTGCCAGCT
TGGAATCCGCAGCCGCTTCCGCGCATTGATCAGATAGTTCAGAATCCAGA
CAGGCCGCAAGAAGAGCCGGATGTTGGGGCAAACCATGAGCATGTGGATT
AG

Coding sequence (CDS) from alignment at ScGOVlb_3404:3581452..3582903+

>Gvermi12150.t1 ID=Gvermi12150.t1|Name=Gvermi12150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:3581452..3582903+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCTTCGGATGCCCCCATCGTTGACGTTTCGGCGAAGAACGAGCA
ACTTTCTAAAAAGGCATCATCATCATCTGGTGATGAAGCCGCCCTCGTTA
TCAAGAACCCAACCGACGGACCCGGAACACTGCCTTTTTCCCTCAGCTTG
CCGACGGGTACCACTGTCGGCGAACTCAAGCAGGAGCTGAATGCAAATTA
TCCTGGTTCGCCCCCTATTCAAGCTCAGCGCCTGATATACGCTGGAAAGC
TACTTCGAGATGGGCAGAAGCTCCGTGAATTTCTTTCACCTCATCAGCAA
GCAGGAACTCCCCACACGATTCATCTTGTCGTATCGTATCCGCAACAAAC
TCGACCGTCATCTCAGAATGCAGCGACGGCAAACCAGCCGTCCACACATA
CGGGAGCTGCTGGCGGAGCTTCCGGTACACAGCTACCTCAGCTTCCGCAG
TTCGCCTACAACGGTCAATTTCTTGGAGGCCAGGTGCCGATACCTCTTCA
AGAAGCTATGTATGCCCATCATTTGCAAGTTTTTGAAAATGTAGTTGCCC
GAACATTGCAGAACGGCAACGGCGCGCAACTGGACCCTCGCACGTTGGCT
CAAATGCATgccgcggatgttgctgcggctgcggctgccgctAACGCAAT
GGATGGCCGAACGCCGACCCACGGTGTTCCACCGCCACTCGCGCATGTGA
ATGGCGTATTTCCAGGCATGATGCCCATGCACCCTGATGTCCGTTTTTAC
AACCTCCCTCACATGAACATGGCTGCTGCCCAGCATGCTCAGCATGCCCA
CCATGCCCATACGCACCAACAACCTCCACTACAGCGCTTCCACCAAAACG
GGCAGCCTCAACCTCATCCAGCGCAACAGCAAAGGGGATTCAATGGCTTT
CATCTGGACGTGCAGATTGGTAGGCATGGGTTGCCAAACGGAATGCGTAA
CGCACTTAACGCTCAGAATCAGCCACACGTCAGGCAGTTTGTGTTTCAGA
TTGAGATTAACTGGGCTCTTATCGCAAAACTGCTTTTCATTGTTTACTTA
CTTGGCCATGAAGGAAACTCCAGTCGTGTATACTCTCTTATCATTGCGGC
ATTGGGTATCTATCTGTGGCAGACGGGCCATCTGGAATGGTTCCGTCGTC
TAATTAGCATTGCTCTTCCAAGTCCAGGACGATTGATCGAAAACTTATTT
CCTCAACAAACCCAACAACATGACGCACAGCAAGAAGATGATTCTAGAGA
ATCTCCACCAGCACGACAGAATCCCTACGGTTATCCAGCTCTAATCTTCT
TTTTCGTTTACTCCTTTGTGTACGGGATTGTTTGCTCATTGTTGCCAGCT
TGGAATCCGCAGCCGCTTCCGCGCATTGATCAGATAGTTCAGAATCCAGA
CAGGCCGCAAGAAGAGCCGGATGTTGGGGCAAACCATGAGCATGTGGATT
AG