Gvermi12144.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12144.t1
Unique NameGvermi12144.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3559866..3560396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX45072
PFAMsPTPS
Max annot lvl2759|Eukaryota
Evalue5.16e-49
EggNOG OGs2CYMG@1|root,2S557@2759|Eukaryota
Description6-pyruvoyl tetrahydropterin synthase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12144Gvermi12144Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3559866..3560396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12144.t1Gvermi12144.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3559866..3560396 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12144.t1.start1Gvermi12144.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3559866..3559868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12144.t1.CDS1Gvermi12144.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3559866..3559946 +
Gvermi12144.t1.CDS2Gvermi12144.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3560091..3560396 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12144.t1.exon1Gvermi12144.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3559866..3559946 +
Gvermi12144.t1.exon2Gvermi12144.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3560091..3560396 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12144.t1.intron1Gvermi12144.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3559947..3560090 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12144.t1.stop1Gvermi12144.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3560394..3560396 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12144.t1 ID=Gvermi12144.t1|Name=Gvermi12144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=129bp
MGYSLNVRDSMMIAHSFAGKEFGPAEKMHGATYVVDCEFITDKLESHVNW
VVDIGEASTVLKEVLSEFNYKNLDELEQFKGQNTTTEFMCRQVFNRVADR
FRGKFVGAIKIKMKESHIAWASYTGVVE*
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spliced messenger RNA

>Gvermi12144.t1 ID=Gvermi12144.t1|Name=Gvermi12144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=387bp|location=Sequence derived from alignment at ScGOVlb_3404:3559866..3560396+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTACTCTTTGAACGTTAGGGACTCGATGATGATAGCTCATTCGTT
CGCAGGCAAGGAGTTTGGCCCAGCTGAGAAGATGCATGGTGCCACCTACG
TCGTGGACTGCGAGTTTATAACTGACAAGCTTGAAAGCCATGTGAACTGG
GTGGTAGACATCGGCGAGGCAAGCACTGTGTTGAAAGAAGTTTTGTCCGA
GTTCAACTACAAGAACTTGGACGAATTGGAACAGTTCAAGGGGCAAAACA
CAACGACCGAATTCATGTGTAGACAAGTATTCAATCGCGTTGCAGACCGC
TTCAGGGGCAAATTTGTGGGCGCCATAAAGATCAAAATGAAGGAGTCGCA
TATAGCATGGGCAAGTTACACCGGTGTGGTAGAATGA
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protein sequence of Gvermi12144.t1

>Gvermi12144.t1 ID=Gvermi12144.t1|Name=Gvermi12144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=129bp
MGYSLNVRDSMMIAHSFAGKEFGPAEKMHGATYVVDCEFITDKLESHVNW
VVDIGEASTVLKEVLSEFNYKNLDELEQFKGQNTTTEFMCRQVFNRVADR
FRGKFVGAIKIKMKESHIAWASYTGVVE*
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mRNA from alignment at ScGOVlb_3404:3559866..3560396+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12144.t1 ID=Gvermi12144.t1|Name=Gvermi12144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=531bp|location=Sequence derived from alignment at ScGOVlb_3404:3559866..3560396+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTACTCTTTGAACGTTAGGGACTCGATGATGATAGCTCATTCGTT
CGCAGGCAAGGAGTTTGGCCCAGCTGAGAAGGTAAGCCAGCACACCTGCT
CGTACCATCGCAACCACGCTCAGAGCAGCCAGCCAGAAATGATTTGAACG
AAGCTAGAGCTAACCTCGGGACCATTTCCACGGCATTCGAAACATTGTGT
AACCTTGGGTTTGCTTGAACAATAGATGCATGGTGCCACCTACGTCGTGG
ACTGCGAGTTTATAACTGACAAGCTTGAAAGCCATGTGAACTGGGTGGTA
GACATCGGCGAGGCAAGCACTGTGTTGAAAGAAGTTTTGTCCGAGTTCAA
CTACAAGAACTTGGACGAATTGGAACAGTTCAAGGGGCAAAACACAACGA
CCGAATTCATGTGTAGACAAGTATTCAATCGCGTTGCAGACCGCTTCAGG
GGCAAATTTGTGGGCGCCATAAAGATCAAAATGAAGGAGTCGCATATAGC
ATGGGCAAGTTACACCGGTGTGGTAGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3559866..3560396+

>Gvermi12144.t1 ID=Gvermi12144.t1|Name=Gvermi12144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=387bp|location=Sequence derived from alignment at ScGOVlb_3404:3559866..3560396+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTACTCTTTGAACGTTAGGGACTCGATGATGATAGCTCATTCGTT
CGCAGGCAAGGAGTTTGGCCCAGCTGAGAAGATGCATGGTGCCACCTACG
TCGTGGACTGCGAGTTTATAACTGACAAGCTTGAAAGCCATGTGAACTGG
GTGGTAGACATCGGCGAGGCAAGCACTGTGTTGAAAGAAGTTTTGTCCGA
GTTCAACTACAAGAACTTGGACGAATTGGAACAGTTCAAGGGGCAAAACA
CAACGACCGAATTCATGTGTAGACAAGTATTCAATCGCGTTGCAGACCGC
TTCAGGGGCAAATTTGTGGGCGCCATAAAGATCAAAATGAAGGAGTCGCA
TATAGCATGGGCAAGTTACACCGGTGTGGTAGAATGA
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