Gvermi12119.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12119.t1
Unique NameGvermi12119.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3461646..3462950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3656.XP_008461591.1
Max annot lvl35493|Streptophyta
Evalue6.39e-11
EggNOG OGs28P4R@1|root,2QVRI@2759|Eukaryota,37MWF@33090|Viridiplantae,3G8WT@35493|Streptophyta,4JG9U@91835|fabids
Descriptionzinc transporter
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12119Gvermi12119Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3461646..3462950 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12119.t1.stop1Gvermi12119.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3461646..3461648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12119.t1.CDS1Gvermi12119.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3461646..3462950 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12119.t1.exon1Gvermi12119.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3461646..3462950 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12119.t1.start1Gvermi12119.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3462948..3462950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12119.t1Gvermi12119.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3461646..3462950 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12119.t1 ID=Gvermi12119.t1|Name=Gvermi12119.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp
MPNNLVLPGAASSKSKSSSRTSSKSGSRVRAPTLPYFPALALFTVGKACR
VFAAFVSFAFLQSGVSLFFYLTCVTFGASVCLLALQRPWNGKRIGAKRAR
RTLLAGLTSAITLTMWSAGLRAAGPLRALLVDGAELPLVYVFALVRRREL
PERRKTRGAILMLIAYMLLMWDASGHVPNVQQLEQSALGQRAELTLDRFA
HLTHLKEDATVADQNVDADGMASGARRRLQRLVQRFDVDQGAAKATDWRR
SPTTWRCELGVMLVLAASVMMQSSRAFTRRLATELGGAKRYFALGTSAAS
AWLALATLLVSAVWNDGGRGAENIAESMRWTGVGVLWLVVPYYVRAIVST
AISTRVVLQGGVVLPFVMAVCGCAFVGATKCAGGASWLLVAAFLLNACGV
SLMMAGGARRAISELPLDGGAGGGSSSGAESGAR*
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spliced messenger RNA

>Gvermi12119.t1 ID=Gvermi12119.t1|Name=Gvermi12119.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:3461646..3462950- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAACAACTTGGTTCTGCCAGGCGCCGCGTCCTCAAAGTCCAAATC
CTCCTCTCGCACCTCTTCAAAATCCGGTTCCCGCGTGAGAGCGCCCACCC
TGCCGTACTTTCCAGCCTTGGCTCTTTTCACAGTTGGAAAAGCGTGTCGG
GTGTTTGCAGCGTTCGTGTCGTTCGCGTTTTTGCAGAGCGGCGTTTCGCT
GTTTTTCTACTTGACGTGTGTGACGTTTGGCGCCAGTGTCTGCTTGCTAG
CGCTACAGAGACCGTGGAATGGCAAGCGAATCGGCGCCAAACGAGCGAGA
AGAACACTTTTGGCGGGGTTGACTTCGGCCATTACGCTTACTATGTGGTC
GGCGGGACTCAGAGCAGCAGGCCCGTTAAGAGCGCTGTTGGTAGACGGTG
CCGAACTACCGCTCGTGTACGTGTTTGCGCTGGTGAGACGACGCGAATTA
CCTGAGAGACGGAAGACAAGAGGGGCCATACTAATGCTAATAGCGTACAT
GCTGCTCATGTGGGATGCATCAGGGCATGTACCCAATGTACAACAACTGG
AACAATCGGCTCTTGGGCAGCGCGCAGAACTCACCTTGGACCGCTTCGCA
CATCTTACACATTTGAAAGAGGACGCCACGGTAGCGGATCAAAACGTAGA
CGCCGACGGAATGGCAAGCGGTGCGCGACGGCGATTGCAACGGCTCGTGC
AGCGATTTGATGTGGATCAGGGCGCGGCGAAAGCAACAGACTGGAGACGT
TCGCCAACCACATGGCGATGTGAACTGGGAGTGATGCTCGTACTGGCTGC
CTCGGTTATGATGCAATCGTCGCGCGCTTTTACCCGAAGGTTAGCGACTG
AACTTGGTGGCGCCAAGAGATACTTTGCGCTCGGAACAAGTGCGGCAAGC
GCTTGGCTGGCACTTGCGACGCTGTTGGTCTCTGCAGTATGGAACGACGG
AGGCAGGGGGGCAGAGAACATTGCGGAATCGATGCGGTGGACCGGCGTGG
GGGTGCTGTGGTTAGTTGTGCCGTACTACGTACGCGCGATTGTGAGTACG
GCGATCTCCACGCGCGTGGTGTTGCAGGGCGGGGTGGTGTTACCGTTCGT
GATGGCGGTATGTGGATGCGCGTTTGTTGGAGCTACAAAGTGCGCTGGAG
GGGCGAGCTGGCTGCTGGTAGCAGCATTCCTGTTGAACGCTTGCGGAGTA
TCCCTTATGATGGCCGGCGGAGCGCGACGCGCGATTTCAGAGCTACCCCT
GGACGGAGGGGCGGGTGGAGGCAGTTCGAGTGGCGCTGAGAGTGGGGCGC
GCTAG
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protein sequence of Gvermi12119.t1

>Gvermi12119.t1 ID=Gvermi12119.t1|Name=Gvermi12119.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=435bp
MPNNLVLPGAASSKSKSSSRTSSKSGSRVRAPTLPYFPALALFTVGKACR
VFAAFVSFAFLQSGVSLFFYLTCVTFGASVCLLALQRPWNGKRIGAKRAR
RTLLAGLTSAITLTMWSAGLRAAGPLRALLVDGAELPLVYVFALVRRREL
PERRKTRGAILMLIAYMLLMWDASGHVPNVQQLEQSALGQRAELTLDRFA
HLTHLKEDATVADQNVDADGMASGARRRLQRLVQRFDVDQGAAKATDWRR
SPTTWRCELGVMLVLAASVMMQSSRAFTRRLATELGGAKRYFALGTSAAS
AWLALATLLVSAVWNDGGRGAENIAESMRWTGVGVLWLVVPYYVRAIVST
AISTRVVLQGGVVLPFVMAVCGCAFVGATKCAGGASWLLVAAFLLNACGV
SLMMAGGARRAISELPLDGGAGGGSSSGAESGAR*
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mRNA from alignment at ScGOVlb_3404:3461646..3462950-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12119.t1 ID=Gvermi12119.t1|Name=Gvermi12119.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:3461646..3462950- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCAAACAACTTGGTTCTGCCAGGCGCCGCGTCCTCAAAGTCCAAATC
CTCCTCTCGCACCTCTTCAAAATCCGGTTCCCGCGTGAGAGCGCCCACCC
TGCCGTACTTTCCAGCCTTGGCTCTTTTCACAGTTGGAAAAGCGTGTCGG
GTGTTTGCAGCGTTCGTGTCGTTCGCGTTTTTGCAGAGCGGCGTTTCGCT
GTTTTTCTACTTGACGTGTGTGACGTTTGGCGCCAGTGTCTGCTTGCTAG
CGCTACAGAGACCGTGGAATGGCAAGCGAATCGGCGCCAAACGAGCGAGA
AGAACACTTTTGGCGGGGTTGACTTCGGCCATTACGCTTACTATGTGGTC
GGCGGGACTCAGAGCAGCAGGCCCGTTAAGAGCGCTGTTGGTAGACGGTG
CCGAACTACCGCTCGTGTACGTGTTTGCGCTGGTGAGACGACGCGAATTA
CCTGAGAGACGGAAGACAAGAGGGGCCATACTAATGCTAATAGCGTACAT
GCTGCTCATGTGGGATGCATCAGGGCATGTACCCAATGTACAACAACTGG
AACAATCGGCTCTTGGGCAGCGCGCAGAACTCACCTTGGACCGCTTCGCA
CATCTTACACATTTGAAAGAGGACGCCACGGTAGCGGATCAAAACGTAGA
CGCCGACGGAATGGCAAGCGGTGCGCGACGGCGATTGCAACGGCTCGTGC
AGCGATTTGATGTGGATCAGGGCGCGGCGAAAGCAACAGACTGGAGACGT
TCGCCAACCACATGGCGATGTGAACTGGGAGTGATGCTCGTACTGGCTGC
CTCGGTTATGATGCAATCGTCGCGCGCTTTTACCCGAAGGTTAGCGACTG
AACTTGGTGGCGCCAAGAGATACTTTGCGCTCGGAACAAGTGCGGCAAGC
GCTTGGCTGGCACTTGCGACGCTGTTGGTCTCTGCAGTATGGAACGACGG
AGGCAGGGGGGCAGAGAACATTGCGGAATCGATGCGGTGGACCGGCGTGG
GGGTGCTGTGGTTAGTTGTGCCGTACTACGTACGCGCGATTGTGAGTACG
GCGATCTCCACGCGCGTGGTGTTGCAGGGCGGGGTGGTGTTACCGTTCGT
GATGGCGGTATGTGGATGCGCGTTTGTTGGAGCTACAAAGTGCGCTGGAG
GGGCGAGCTGGCTGCTGGTAGCAGCATTCCTGTTGAACGCTTGCGGAGTA
TCCCTTATGATGGCCGGCGGAGCGCGACGCGCGATTTCAGAGCTACCCCT
GGACGGAGGGGCGGGTGGAGGCAGTTCGAGTGGCGCTGAGAGTGGGGCGC
GCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3461646..3462950-

>Gvermi12119.t1 ID=Gvermi12119.t1|Name=Gvermi12119.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:3461646..3462950- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCAAACAACTTGGTTCTGCCAGGCGCCGCGTCCTCAAAGTCCAAATC
CTCCTCTCGCACCTCTTCAAAATCCGGTTCCCGCGTGAGAGCGCCCACCC
TGCCGTACTTTCCAGCCTTGGCTCTTTTCACAGTTGGAAAAGCGTGTCGG
GTGTTTGCAGCGTTCGTGTCGTTCGCGTTTTTGCAGAGCGGCGTTTCGCT
GTTTTTCTACTTGACGTGTGTGACGTTTGGCGCCAGTGTCTGCTTGCTAG
CGCTACAGAGACCGTGGAATGGCAAGCGAATCGGCGCCAAACGAGCGAGA
AGAACACTTTTGGCGGGGTTGACTTCGGCCATTACGCTTACTATGTGGTC
GGCGGGACTCAGAGCAGCAGGCCCGTTAAGAGCGCTGTTGGTAGACGGTG
CCGAACTACCGCTCGTGTACGTGTTTGCGCTGGTGAGACGACGCGAATTA
CCTGAGAGACGGAAGACAAGAGGGGCCATACTAATGCTAATAGCGTACAT
GCTGCTCATGTGGGATGCATCAGGGCATGTACCCAATGTACAACAACTGG
AACAATCGGCTCTTGGGCAGCGCGCAGAACTCACCTTGGACCGCTTCGCA
CATCTTACACATTTGAAAGAGGACGCCACGGTAGCGGATCAAAACGTAGA
CGCCGACGGAATGGCAAGCGGTGCGCGACGGCGATTGCAACGGCTCGTGC
AGCGATTTGATGTGGATCAGGGCGCGGCGAAAGCAACAGACTGGAGACGT
TCGCCAACCACATGGCGATGTGAACTGGGAGTGATGCTCGTACTGGCTGC
CTCGGTTATGATGCAATCGTCGCGCGCTTTTACCCGAAGGTTAGCGACTG
AACTTGGTGGCGCCAAGAGATACTTTGCGCTCGGAACAAGTGCGGCAAGC
GCTTGGCTGGCACTTGCGACGCTGTTGGTCTCTGCAGTATGGAACGACGG
AGGCAGGGGGGCAGAGAACATTGCGGAATCGATGCGGTGGACCGGCGTGG
GGGTGCTGTGGTTAGTTGTGCCGTACTACGTACGCGCGATTGTGAGTACG
GCGATCTCCACGCGCGTGGTGTTGCAGGGCGGGGTGGTGTTACCGTTCGT
GATGGCGGTATGTGGATGCGCGTTTGTTGGAGCTACAAAGTGCGCTGGAG
GGGCGAGCTGGCTGCTGGTAGCAGCATTCCTGTTGAACGCTTGCGGAGTA
TCCCTTATGATGGCCGGCGGAGCGCGACGCGCGATTTCAGAGCTACCCCT
GGACGGAGGGGCGGGTGGAGGCAGTTCGAGTGGCGCTGAGAGTGGGGCGC
GCTAG
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