Gvermi12116.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12116.t1
Unique NameGvermi12116.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3452777..3453076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH039CT
PFAMsCyclin
Max annot lvl2759|Eukaryota
KEGG koko:K06657
KEGG Pathwayko04111,map04111
Evalue6.37e-09
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota
DescriptionCyclin-dependent protein kinase
COG categoryS
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12116Gvermi12116Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3452777..3453076 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12116.t1.stop1Gvermi12116.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3452777..3452779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12116.t1.CDS1Gvermi12116.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3452777..3453076 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12116.t1.exon1Gvermi12116.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3452777..3453076 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12116.t1.start1Gvermi12116.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3453074..3453076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12116.t1Gvermi12116.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3452777..3453076 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12116.t1 ID=Gvermi12116.t1|Name=Gvermi12116.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=100bp
MVDDVLYDNAHFAKVGGLDIKELNALELHMLHALRFDLCVSAEQFESFER
SVLADVLASDDAAFCTLRERLRNMGYAAREALPPCSPVSSLDELPASHA*
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spliced messenger RNA

>Gvermi12116.t1 ID=Gvermi12116.t1|Name=Gvermi12116.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=300bp|location=Sequence derived from alignment at ScGOVlb_3404:3452777..3453076- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACGACGTGCTGTACGACAACGCGCACTTCGCCAAGGTGGGCGG
GCTGGACATCAAGGAGCTCAACGCGCTGGAGCTGCACATGCTGCACGCGC
TGCGCTTCGACCTGTGCGTCAGCGCCGAGCAGTTTGAGAGCTTCGAGCGC
AGCGTGCTGGCCGACGTGCTGGCGAGCGACGACGCCGCGTTCTGCACGCT
GCGCGAGCGGCTGCGCAACATGGGCTACGCCGCGCGCGAGGCGCTGCCGC
CGTGCTCGCCCGTGTCGTCGCTGGACGAGCTGCCCGCGTCGCACGCGTGA
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protein sequence of Gvermi12116.t1

>Gvermi12116.t1 ID=Gvermi12116.t1|Name=Gvermi12116.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=100bp
MVDDVLYDNAHFAKVGGLDIKELNALELHMLHALRFDLCVSAEQFESFER
SVLADVLASDDAAFCTLRERLRNMGYAAREALPPCSPVSSLDELPASHA*
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mRNA from alignment at ScGOVlb_3404:3452777..3453076-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12116.t1 ID=Gvermi12116.t1|Name=Gvermi12116.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=300bp|location=Sequence derived from alignment at ScGOVlb_3404:3452777..3453076- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGACGACGTGCTGTACGACAACGCGCACTTCGCCAAGGTGGGCGG
GCTGGACATCAAGGAGCTCAACGCGCTGGAGCTGCACATGCTGCACGCGC
TGCGCTTCGACCTGTGCGTCAGCGCCGAGCAGTTTGAGAGCTTCGAGCGC
AGCGTGCTGGCCGACGTGCTGGCGAGCGACGACGCCGCGTTCTGCACGCT
GCGCGAGCGGCTGCGCAACATGGGCTACGCCGCGCGCGAGGCGCTGCCGC
CGTGCTCGCCCGTGTCGTCGCTGGACGAGCTGCCCGCGTCGCACGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3452777..3453076-

>Gvermi12116.t1 ID=Gvermi12116.t1|Name=Gvermi12116.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=300bp|location=Sequence derived from alignment at ScGOVlb_3404:3452777..3453076- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGACGACGTGCTGTACGACAACGCGCACTTCGCCAAGGTGGGCGG
GCTGGACATCAAGGAGCTCAACGCGCTGGAGCTGCACATGCTGCACGCGC
TGCGCTTCGACCTGTGCGTCAGCGCCGAGCAGTTTGAGAGCTTCGAGCGC
AGCGTGCTGGCCGACGTGCTGGCGAGCGACGACGCCGCGTTCTGCACGCT
GCGCGAGCGGCTGCGCAACATGGGCTACGCCGCGCGCGAGGCGCTGCCGC
CGTGCTCGCCCGTGTCGTCGCTGGACGAGCTGCCCGCGTCGCACGCGTGA
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