Gvermi12115.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12115.t1
Unique NameGvermi12115.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length512
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3449749..3451673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4555.Si013391m
PFAMsPro_isomerase,WD40
Max annot lvl35493|Streptophyta
KEGG koko:K12736
GOsGO:0000003,GO:0000413,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006464,GO:0006807,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0009653,GO:0009791,GO:0009888,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0016018,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0036211,GO:0040008,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901564,GO:1902275,GO:1902494,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000241,GO:2000280
Evalue7.53e-82
EggNOG OGsKOG0882@1|root,KOG0882@2759|Eukaryota,37I32@33090|Viridiplantae,3GCZX@35493|Streptophyta,3KQS6@4447|Liliopsida,3IBRS@38820|Poales
EC5.2.1.8
DescriptionCyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12115Gvermi12115Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3449749..3451673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12115.t1Gvermi12115.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3449749..3451673 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12115.t1.stop1Gvermi12115.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3449749..3449751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12115.t1.CDS1Gvermi12115.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3449749..3449864 -
Gvermi12115.t1.CDS2Gvermi12115.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3450144..3450201 -
Gvermi12115.t1.CDS3Gvermi12115.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3450312..3451673 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12115.t1.exon1Gvermi12115.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3449749..3449864 -
Gvermi12115.t1.exon2Gvermi12115.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3450144..3450201 -
Gvermi12115.t1.exon3Gvermi12115.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3450312..3451673 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12115.t1.intron1Gvermi12115.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3449865..3450143 -
Gvermi12115.t1.intron2Gvermi12115.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3450202..3450311 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12115.t1.start1Gvermi12115.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3451671..3451673 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12115.t1 ID=Gvermi12115.t1|Name=Gvermi12115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=512bp
LLAAAQSPRADVLLTCSAADATLKLFAPPTFELLHACALPFEPGGALLYV
ERPAPPLALVSHARSPAVACFSLPDLRHCADLAPPHACPLALMAYNRPHA
AVVSIDAAHVIDYWRVRRAAGTLAACARLPHLRFASKLRTDLFLFARRHL
RPAALAVAPRGATFAVADHRACVHVFRFVTGRRLAVVDLSPRALRACVAA
GAYDALRCDRRRAEQRLAAECAPADQHALPPHNNVAFDETGRYLLFATAL
GVHLVCVAAAATVLIYGLNEHQHRFVNVAVCDADAVARDDGVAAPLPPLV
VASALHSQRIFLFGAARPPAAGRDVMNEPLCADARRAAAPTAAAPAAAPS
RAAPPARRATLHTSAGDIVLQLFAQHAPKAVLNFATHARSGYYDRVVFHR
VVRGFVVQSGDPLGDGRGGESIWGAAFEDEIDGALTHEAGTLSMANAGPN
TNGSQFFITCQAAPHLDGKHTVFGKVMKGMTVVRQIENVKTDRHDKPLQD
VRIESISVHSE*
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spliced messenger RNA

>Gvermi12115.t1 ID=Gvermi12115.t1|Name=Gvermi12115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at ScGOVlb_3404:3449749..3451673- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGGCCGCCGCCCAGTCGCCGCGCGCCGACGTGCTGCTCACGTGCAG
CGCCGCCGACGCCACGCTCAAGCTCTTCGCCCCGCCCACCTTCGAGCTGC
TGCACGCGTGCGCCCTGCCCTTCGAGCCGGGCGGCGCCCTGCTGTACGTC
GAGCGCCCGGCGCCGCCGCTGGCGCTCGTGTCGCACGCCCGCTCGCCCGC
CGTCGCCTGCTTCTCGCTGCCGGACCTGCGCCACTGCGCCGACCTGGCGC
CGCCGCACGCGTGCCCGCTCGCGCTCATGGCGTACAACCGCCCGCACGCC
GCCGTCGTGTCCATCGACGCCGCCCACGTCATCGACTACTGGCGCGTGCG
CCGCGCCGCCGGCACCCTCGCCGCGTGCGCCCGCCTGCCGCACCTGCGCT
TTGCCTCAAAGCTGCGCACTGACCTCTTCCTGTTTGCGCGCCGCCACCTG
CGCCCCGCCGCCCTGGCCGTTGCCCCGCGCGGCGCCACCTTCGCCGTCGC
CGACCATCGCGCCTGCGTCCACGTCTTCCGCTTCGTCACGGGCCGCCGCC
TCGCCGTCGTCGACCTCTCGCCGCGCGCCCTGCGCGCCTGCGTCGCCGCC
GGCGCGTACGACGCCCTGCGCTGCGACCGCCGCCGCGCGGAGCAGCGCCT
CGCCGCCGAGTGCGCGCCCGCCGACCAACACGCGCTGCCCCCCCACAACA
ACGTCGCCTTCGACGAGACGGGCCGCTACCTGCTGTTCGCCACCGCCCTG
GGCGTCCACCTCGTGTGCGTCGCCGCCGCCGCCACCGTCCTCATCTACGG
ATTAAACGAACATCAGCACCGCTTTGTCAACGTCGCCGTGTGCGACGCCG
ACGCCGTCGCGCGCGACGACGGCGTCGCCGCCCCGCTGCCGCCGCTCGTC
GTCGCCTCTGCGCTCCACAGCCAGCGCATCTTTCTGTTCGGCGCCGCGCG
CCCGCCCGCCGCGGGCCGCGACGTCATGAACGAGCCGCTGTGCGCCGACG
CGCGCCGCGCCGCCGCGCCCACGGCGGCGGCGCCGGCGGCGGCGCCGTCG
CGCGCCGCGCCGCCGGCGAGGCGCGCCACGCTGCACACCAGCGCCGGCGA
CATCGTGCTGCAGCTGTTCGCGCAGCACGCGCCCAAGGCGGTGCTCAACT
TCGCCACGCACGCGCGCAGCGGCTACTACGACCGCGTCGTGTTCCACCGC
GTGGTGCGCGGCTTCGTCGTGCAGAGCGGCGACCCGCTCGGCGACGGGCG
CGGGGGGGAGTCCATCTGGGGCGCCGCCTTCGAGGACGAGATCGACGGCG
CGCTCACGCACGAGGCGGGCACGCTGTCCATGGCCAACGCGGGGCCCAAC
ACGAATGGGTCGCAATTCTTTATTACGTGCCAAGCGGCGCCGCACTTGGA
CGGCAAGCACACTGTTTTCGGCAAAGTCATGAAGGGAATGACAGTGGTGA
GACAGATCGAAAACGTAAAAACAGACAGGCACGATAAGCCTCTGCAAGAC
GTTCGAATTGAAAGCATATCAGTACACTCGGAATGA
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protein sequence of Gvermi12115.t1

>Gvermi12115.t1 ID=Gvermi12115.t1|Name=Gvermi12115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=512bp
LLAAAQSPRADVLLTCSAADATLKLFAPPTFELLHACALPFEPGGALLYV
ERPAPPLALVSHARSPAVACFSLPDLRHCADLAPPHACPLALMAYNRPHA
AVVSIDAAHVIDYWRVRRAAGTLAACARLPHLRFASKLRTDLFLFARRHL
RPAALAVAPRGATFAVADHRACVHVFRFVTGRRLAVVDLSPRALRACVAA
GAYDALRCDRRRAEQRLAAECAPADQHALPPHNNVAFDETGRYLLFATAL
GVHLVCVAAAATVLIYGLNEHQHRFVNVAVCDADAVARDDGVAAPLPPLV
VASALHSQRIFLFGAARPPAAGRDVMNEPLCADARRAAAPTAAAPAAAPS
RAAPPARRATLHTSAGDIVLQLFAQHAPKAVLNFATHARSGYYDRVVFHR
VVRGFVVQSGDPLGDGRGGESIWGAAFEDEIDGALTHEAGTLSMANAGPN
TNGSQFFITCQAAPHLDGKHTVFGKVMKGMTVVRQIENVKTDRHDKPLQD
VRIESISVHSE*
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mRNA from alignment at ScGOVlb_3404:3449749..3451673-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12115.t1 ID=Gvermi12115.t1|Name=Gvermi12115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1925bp|location=Sequence derived from alignment at ScGOVlb_3404:3449749..3451673- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGGCCGCCGCCCAGTCGCCGCGCGCCGACGTGCTGCTCACGTGCAG
CGCCGCCGACGCCACGCTCAAGCTCTTCGCCCCGCCCACCTTCGAGCTGC
TGCACGCGTGCGCCCTGCCCTTCGAGCCGGGCGGCGCCCTGCTGTACGTC
GAGCGCCCGGCGCCGCCGCTGGCGCTCGTGTCGCACGCCCGCTCGCCCGC
CGTCGCCTGCTTCTCGCTGCCGGACCTGCGCCACTGCGCCGACCTGGCGC
CGCCGCACGCGTGCCCGCTCGCGCTCATGGCGTACAACCGCCCGCACGCC
GCCGTCGTGTCCATCGACGCCGCCCACGTCATCGACTACTGGCGCGTGCG
CCGCGCCGCCGGCACCCTCGCCGCGTGCGCCCGCCTGCCGCACCTGCGCT
TTGCCTCAAAGCTGCGCACTGACCTCTTCCTGTTTGCGCGCCGCCACCTG
CGCCCCGCCGCCCTGGCCGTTGCCCCGCGCGGCGCCACCTTCGCCGTCGC
CGACCATCGCGCCTGCGTCCACGTCTTCCGCTTCGTCACGGGCCGCCGCC
TCGCCGTCGTCGACCTCTCGCCGCGCGCCCTGCGCGCCTGCGTCGCCGCC
GGCGCGTACGACGCCCTGCGCTGCGACCGCCGCCGCGCGGAGCAGCGCCT
CGCCGCCGAGTGCGCGCCCGCCGACCAACACGCGCTGCCCCCCCACAACA
ACGTCGCCTTCGACGAGACGGGCCGCTACCTGCTGTTCGCCACCGCCCTG
GGCGTCCACCTCGTGTGCGTCGCCGCCGCCGCCACCGTCCTCATCTACGG
ATTAAACGAACATCAGCACCGCTTTGTCAACGTCGCCGTGTGCGACGCCG
ACGCCGTCGCGCGCGACGACGGCGTCGCCGCCCCGCTGCCGCCGCTCGTC
GTCGCCTCTGCGCTCCACAGCCAGCGCATCTTTCTGTTCGGCGCCGCGCG
CCCGCCCGCCGCGGGCCGCGACGTCATGAACGAGCCGCTGTGCGCCGACG
CGCGCCGCGCCGCCGCGCCCACGGCGGCGGCGCCGGCGGCGGCGCCGTCG
CGCGCCGCGCCGCCGGCGAGGCGCGCCACGCTGCACACCAGCGCCGGCGA
CATCGTGCTGCAGCTGTTCGCGCAGCACGCGCCCAAGGCGGTGCTCAACT
TCGCCACGCACGCGCGCAGCGGCTACTACGACCGCGTCGTGTTCCACCGC
GTGGTGCGCGGCTTCGTCGTGCAGAGCGGCGACCCGCTCGGCGACGGGCG
CGGGGGGGAGTCCATCTGGGGCGCCGCCTTCGAGGACGAGATCGACGGCG
CGCTCACGCACGAGGCGGGCACGCTGTCCATGGCCAACGCGGGGCCCAAC
ACGAATGGGTCGGTGAGTTTTGCCGCTTGCGCGCGCGCGCTGCGCGGTGC
GCCGCGCCCGCTGACCACTCGTTGCTGACCCGTGTGTTTTGTGTGTCGTG
CGCGCGTGCCATCGTCGGTCAGCAATTCTTTATTACGTGCCAAGCGGCGC
CGCACTTGGACGGCAAGCACACTGTTTTCGGTAAGTCGAGCGCACCTACG
GGTCGCCTCAGCTGCACAAAACACGCAAGCGTGGACGCGTTTCTTTCACA
CACGCCGCACCATGACTGCCCCTGAGCACCAGCGCGACAGCAAATCACAT
CGACAAGCATCGTCAACAAACTAACCATTTCTTCGCGATTGCACTGCCTT
GTGCCGCTTGCTCCGCACTTCCATCCGTCGCAAATGGTCTCCAACACACA
TTACACCAACATCGTACACGCTCACACCGCTATTGATATTCATCCTCGCC
GCTTTCCAGGCAAAGTCATGAAGGGAATGACAGTGGTGAGACAGATCGAA
AACGTAAAAACAGACAGGCACGATAAGCCTCTGCAAGACGTTCGAATTGA
AAGCATATCAGTACACTCGGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3449749..3451673-

>Gvermi12115.t1 ID=Gvermi12115.t1|Name=Gvermi12115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1536bp|location=Sequence derived from alignment at ScGOVlb_3404:3449749..3451673- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGGCCGCCGCCCAGTCGCCGCGCGCCGACGTGCTGCTCACGTGCAG
CGCCGCCGACGCCACGCTCAAGCTCTTCGCCCCGCCCACCTTCGAGCTGC
TGCACGCGTGCGCCCTGCCCTTCGAGCCGGGCGGCGCCCTGCTGTACGTC
GAGCGCCCGGCGCCGCCGCTGGCGCTCGTGTCGCACGCCCGCTCGCCCGC
CGTCGCCTGCTTCTCGCTGCCGGACCTGCGCCACTGCGCCGACCTGGCGC
CGCCGCACGCGTGCCCGCTCGCGCTCATGGCGTACAACCGCCCGCACGCC
GCCGTCGTGTCCATCGACGCCGCCCACGTCATCGACTACTGGCGCGTGCG
CCGCGCCGCCGGCACCCTCGCCGCGTGCGCCCGCCTGCCGCACCTGCGCT
TTGCCTCAAAGCTGCGCACTGACCTCTTCCTGTTTGCGCGCCGCCACCTG
CGCCCCGCCGCCCTGGCCGTTGCCCCGCGCGGCGCCACCTTCGCCGTCGC
CGACCATCGCGCCTGCGTCCACGTCTTCCGCTTCGTCACGGGCCGCCGCC
TCGCCGTCGTCGACCTCTCGCCGCGCGCCCTGCGCGCCTGCGTCGCCGCC
GGCGCGTACGACGCCCTGCGCTGCGACCGCCGCCGCGCGGAGCAGCGCCT
CGCCGCCGAGTGCGCGCCCGCCGACCAACACGCGCTGCCCCCCCACAACA
ACGTCGCCTTCGACGAGACGGGCCGCTACCTGCTGTTCGCCACCGCCCTG
GGCGTCCACCTCGTGTGCGTCGCCGCCGCCGCCACCGTCCTCATCTACGG
ATTAAACGAACATCAGCACCGCTTTGTCAACGTCGCCGTGTGCGACGCCG
ACGCCGTCGCGCGCGACGACGGCGTCGCCGCCCCGCTGCCGCCGCTCGTC
GTCGCCTCTGCGCTCCACAGCCAGCGCATCTTTCTGTTCGGCGCCGCGCG
CCCGCCCGCCGCGGGCCGCGACGTCATGAACGAGCCGCTGTGCGCCGACG
CGCGCCGCGCCGCCGCGCCCACGGCGGCGGCGCCGGCGGCGGCGCCGTCG
CGCGCCGCGCCGCCGGCGAGGCGCGCCACGCTGCACACCAGCGCCGGCGA
CATCGTGCTGCAGCTGTTCGCGCAGCACGCGCCCAAGGCGGTGCTCAACT
TCGCCACGCACGCGCGCAGCGGCTACTACGACCGCGTCGTGTTCCACCGC
GTGGTGCGCGGCTTCGTCGTGCAGAGCGGCGACCCGCTCGGCGACGGGCG
CGGGGGGGAGTCCATCTGGGGCGCCGCCTTCGAGGACGAGATCGACGGCG
CGCTCACGCACGAGGCGGGCACGCTGTCCATGGCCAACGCGGGGCCCAAC
ACGAATGGGTCGCAATTCTTTATTACGTGCCAAGCGGCGCCGCACTTGGA
CGGCAAGCACACTGTTTTCGGCAAAGTCATGAAGGGAATGACAGTGGTGA
GACAGATCGAAAACGTAAAAACAGACAGGCACGATAAGCCTCTGCAAGAC
GTTCGAATTGAAAGCATATCAGTACACTCGGAATGA
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