Gvermi12113.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12113.t1
Unique NameGvermi12113.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3446771..3448105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000025468
PFAMsSAS-6_N
Max annot lvl121069|Pythiales
Evalue5.32e-10
EggNOG OGs2CMEI@1|root,2QQ4W@2759|Eukaryota,1MAW6@121069|Pythiales
DescriptionSpindle assembly protein. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12113Gvermi12113Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3446771..3448105 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12113.t1.start1Gvermi12113.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3446771..3446773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12113.t1.CDS1Gvermi12113.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3446771..3448105 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12113.t1.exon1Gvermi12113.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3446771..3448105 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12113.t1.stop1Gvermi12113.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3448103..3448105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12113.t1Gvermi12113.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3446771..3448105 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12113.t1 ID=Gvermi12113.t1|Name=Gvermi12113.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MAADSLLEELLPLVVYRRAPPGPPPTTSSLSVSVAWSEPDSALTLTLFDL
SADLLLLRHVQTASTYPAFRAAQSLRVDFSQFAAHLVGLFKRVVTDDAYI
AELYLGAAGEAVRDAARDPGGDAGAAERHDDEQQFHTPPERLPEHAAAPT
PVLRIVEIATFKLITHIELDMQHASSHLLVSTLATLARGATTGAQRQRQL
ESDLEHVRSQLRDANLNADRLQHLLTEAEQKMRMGERDSHKCRELEQVVQ
TNDQRVKELELSTERYQTVAAECDHLKTQVEALVESNANKDAEISALKQR
EQTLLSQRQQATDEIEKGNKIIDTLQNELRTSRARSRVKSKLIAKQEQIL
SEREARVAELQREVVRMRDRAALLQVQKEGVDDRLRDALGKLEENRAVLQ
SDQQVIAYLNRELNERLIGQIGADTVQDVLGATQDVVDGAGVAT*
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spliced messenger RNA

>Gvermi12113.t1 ID=Gvermi12113.t1|Name=Gvermi12113.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3446771..3448105+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCGACTCATTGCTGGAGGAGCTGCTGCCGCTGGTGGTGTAccg
ccgcgctccgcctggcccgccgcccaccaccTCGTCCCTCAGCGTCAGCG
TCGCCTGGAGCGAACCCGACTCGGCGCTCACGCTCACCTTATTCGATCTG
TCCGCCGACCTCTTGCTGCTGCGACACGTGCAGACCGCCTCCACATACCC
CGCGTTCCGCGCCGCGCAGTCGCTGCGCGTCGACTTCTCGCAGTTTGCCG
CCCACTTGGTCGGTTTGTTCAAGCGCGTTGTCACCGACGACGCCTACATT
GCCGAGCTCTATCTGGGCGCTGCCGGGGAGGCTGTGAGAGATGCTGCCAG
GGACCCTGGCGGAGATGCCGGCGCCGCGGAACGACACGACGATGAGCAGC
AGTTTCATACACCCCCTGAGCGTCTGCCGGAGCACGCTGCGGCGCCCACG
CCCGTGTTGCGCATCGTCGAGATTGCTACTTTCAAGCTCATCACGCACAT
TGAGCTTGACATGCAGCATGCGTCCAGCCATTTATTGGTCTCGACGCTGG
CCACGTTGGCTAGAGGCGCTACCACTGGCGCTCAACGCCAAAGGCAGTTG
GAGTCCGACCTAGAGCATGTGCGCTCTCAGTTGCGCGACGCCAATCTTAA
CGCCGATCGATTGCAGCACCTGCTGACGGAAGCGGAGCAGAAAATGCGCA
TGGGCGAGCGCGACTCGCACAAGTGTCGTGAGCTTGAGCAAGTGGTGCAG
ACCAACGATCAGCGTGTTAAGGAGCTTGAGCTTTCTACCGAGAGATACCA
GACAGTGGCCGCGGAGTGCGATCACCTTAAAACGCAAGTCGAAGCTCTGG
TGGAAAGTAATGCGAACAAGGATGCTGAGATTAGCGCATTGAAACAACGC
GAGCAGACGCTGCTTTCACAAAGACAACAGGCTACCGATGAAATTGAGAA
GGGCAACAAAATTATAGACACTCTGCAGAACGAGTTGCGCACAAGTCGCG
CCAGAAGTAGGGTGAAGAGCAAGCTGATTGCGAAGCAGGAGCAAATTTTG
AGCGAGAGGGAGGCCAGGGTGGCCGAGTTGCAGCGAGAAGTGGTTCGAAT
GCGCGATCGTGCGGCTCTGTTGCAGGTGCAGAAGGAGGGGGTGGATGACC
GACTGCGCGATGCGCTCGGCAAGTTGGAGGAAAATCGAGCTGTGTTACAG
AGCGATCAGCAGGTTATTGCTTATCTTAATCGCGAGTTGAACGAAAGACT
TATCGGGCAGATTGGCGCGGACACTGTGCAGGACGTGCTAGGCGCCACCC
AAGACGTTGTGGACGGCGCTGGTGTTGCCACCTGA
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protein sequence of Gvermi12113.t1

>Gvermi12113.t1 ID=Gvermi12113.t1|Name=Gvermi12113.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MAADSLLEELLPLVVYRRAPPGPPPTTSSLSVSVAWSEPDSALTLTLFDL
SADLLLLRHVQTASTYPAFRAAQSLRVDFSQFAAHLVGLFKRVVTDDAYI
AELYLGAAGEAVRDAARDPGGDAGAAERHDDEQQFHTPPERLPEHAAAPT
PVLRIVEIATFKLITHIELDMQHASSHLLVSTLATLARGATTGAQRQRQL
ESDLEHVRSQLRDANLNADRLQHLLTEAEQKMRMGERDSHKCRELEQVVQ
TNDQRVKELELSTERYQTVAAECDHLKTQVEALVESNANKDAEISALKQR
EQTLLSQRQQATDEIEKGNKIIDTLQNELRTSRARSRVKSKLIAKQEQIL
SEREARVAELQREVVRMRDRAALLQVQKEGVDDRLRDALGKLEENRAVLQ
SDQQVIAYLNRELNERLIGQIGADTVQDVLGATQDVVDGAGVAT*
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mRNA from alignment at ScGOVlb_3404:3446771..3448105+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12113.t1 ID=Gvermi12113.t1|Name=Gvermi12113.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3446771..3448105+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCGACTCATTGCTGGAGGAGCTGCTGCCGCTGGTGGTGTAccg
ccgcgctccgcctggcccgccgcccaccaccTCGTCCCTCAGCGTCAGCG
TCGCCTGGAGCGAACCCGACTCGGCGCTCACGCTCACCTTATTCGATCTG
TCCGCCGACCTCTTGCTGCTGCGACACGTGCAGACCGCCTCCACATACCC
CGCGTTCCGCGCCGCGCAGTCGCTGCGCGTCGACTTCTCGCAGTTTGCCG
CCCACTTGGTCGGTTTGTTCAAGCGCGTTGTCACCGACGACGCCTACATT
GCCGAGCTCTATCTGGGCGCTGCCGGGGAGGCTGTGAGAGATGCTGCCAG
GGACCCTGGCGGAGATGCCGGCGCCGCGGAACGACACGACGATGAGCAGC
AGTTTCATACACCCCCTGAGCGTCTGCCGGAGCACGCTGCGGCGCCCACG
CCCGTGTTGCGCATCGTCGAGATTGCTACTTTCAAGCTCATCACGCACAT
TGAGCTTGACATGCAGCATGCGTCCAGCCATTTATTGGTCTCGACGCTGG
CCACGTTGGCTAGAGGCGCTACCACTGGCGCTCAACGCCAAAGGCAGTTG
GAGTCCGACCTAGAGCATGTGCGCTCTCAGTTGCGCGACGCCAATCTTAA
CGCCGATCGATTGCAGCACCTGCTGACGGAAGCGGAGCAGAAAATGCGCA
TGGGCGAGCGCGACTCGCACAAGTGTCGTGAGCTTGAGCAAGTGGTGCAG
ACCAACGATCAGCGTGTTAAGGAGCTTGAGCTTTCTACCGAGAGATACCA
GACAGTGGCCGCGGAGTGCGATCACCTTAAAACGCAAGTCGAAGCTCTGG
TGGAAAGTAATGCGAACAAGGATGCTGAGATTAGCGCATTGAAACAACGC
GAGCAGACGCTGCTTTCACAAAGACAACAGGCTACCGATGAAATTGAGAA
GGGCAACAAAATTATAGACACTCTGCAGAACGAGTTGCGCACAAGTCGCG
CCAGAAGTAGGGTGAAGAGCAAGCTGATTGCGAAGCAGGAGCAAATTTTG
AGCGAGAGGGAGGCCAGGGTGGCCGAGTTGCAGCGAGAAGTGGTTCGAAT
GCGCGATCGTGCGGCTCTGTTGCAGGTGCAGAAGGAGGGGGTGGATGACC
GACTGCGCGATGCGCTCGGCAAGTTGGAGGAAAATCGAGCTGTGTTACAG
AGCGATCAGCAGGTTATTGCTTATCTTAATCGCGAGTTGAACGAAAGACT
TATCGGGCAGATTGGCGCGGACACTGTGCAGGACGTGCTAGGCGCCACCC
AAGACGTTGTGGACGGCGCTGGTGTTGCCACCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3446771..3448105+

>Gvermi12113.t1 ID=Gvermi12113.t1|Name=Gvermi12113.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3446771..3448105+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCGACTCATTGCTGGAGGAGCTGCTGCCGCTGGTGGTGTAccg
ccgcgctccgcctggcccgccgcccaccaccTCGTCCCTCAGCGTCAGCG
TCGCCTGGAGCGAACCCGACTCGGCGCTCACGCTCACCTTATTCGATCTG
TCCGCCGACCTCTTGCTGCTGCGACACGTGCAGACCGCCTCCACATACCC
CGCGTTCCGCGCCGCGCAGTCGCTGCGCGTCGACTTCTCGCAGTTTGCCG
CCCACTTGGTCGGTTTGTTCAAGCGCGTTGTCACCGACGACGCCTACATT
GCCGAGCTCTATCTGGGCGCTGCCGGGGAGGCTGTGAGAGATGCTGCCAG
GGACCCTGGCGGAGATGCCGGCGCCGCGGAACGACACGACGATGAGCAGC
AGTTTCATACACCCCCTGAGCGTCTGCCGGAGCACGCTGCGGCGCCCACG
CCCGTGTTGCGCATCGTCGAGATTGCTACTTTCAAGCTCATCACGCACAT
TGAGCTTGACATGCAGCATGCGTCCAGCCATTTATTGGTCTCGACGCTGG
CCACGTTGGCTAGAGGCGCTACCACTGGCGCTCAACGCCAAAGGCAGTTG
GAGTCCGACCTAGAGCATGTGCGCTCTCAGTTGCGCGACGCCAATCTTAA
CGCCGATCGATTGCAGCACCTGCTGACGGAAGCGGAGCAGAAAATGCGCA
TGGGCGAGCGCGACTCGCACAAGTGTCGTGAGCTTGAGCAAGTGGTGCAG
ACCAACGATCAGCGTGTTAAGGAGCTTGAGCTTTCTACCGAGAGATACCA
GACAGTGGCCGCGGAGTGCGATCACCTTAAAACGCAAGTCGAAGCTCTGG
TGGAAAGTAATGCGAACAAGGATGCTGAGATTAGCGCATTGAAACAACGC
GAGCAGACGCTGCTTTCACAAAGACAACAGGCTACCGATGAAATTGAGAA
GGGCAACAAAATTATAGACACTCTGCAGAACGAGTTGCGCACAAGTCGCG
CCAGAAGTAGGGTGAAGAGCAAGCTGATTGCGAAGCAGGAGCAAATTTTG
AGCGAGAGGGAGGCCAGGGTGGCCGAGTTGCAGCGAGAAGTGGTTCGAAT
GCGCGATCGTGCGGCTCTGTTGCAGGTGCAGAAGGAGGGGGTGGATGACC
GACTGCGCGATGCGCTCGGCAAGTTGGAGGAAAATCGAGCTGTGTTACAG
AGCGATCAGCAGGTTATTGCTTATCTTAATCGCGAGTTGAACGAAAGACT
TATCGGGCAGATTGGCGCGGACACTGTGCAGGACGTGCTAGGCGCCACCC
AAGACGTTGTGGACGGCGCTGGTGTTGCCACCTGA
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